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May 29, 1990, NIH Record, Vol. XLII, No. 11
May 29, 1990 Vol. XLII No. l l "The Second U.S. Department of Health Best Thing and Human Services About Payday" National Institutes o f Health e Recori Free Time and Services Given Nill Docs Answer Call to Help The Needy of Washington By Anne Barber A cry for help was mailed recently to hundreds of local physicians residing in the Washingt0n area asking for aid in caring for the needy by volunteering rime and services co che Zacchaeus Medical Clinic. That letter was signed by Dr. Allen L. Dollar, a volunteer physician at the clinic and a senior staff fellow working in NHLBI's Pathology Brand1. Dollar has worked at the clinic, on and off, for the past 13 ye11rs. He began volunteering while an undergraduate student at Georgetown University and worked there for 4 years as a physician's assistant before going off tO medi cal school in Baltimore. Returning to the Washington area 4 years ago, he rejoined the clinic. Zacchaeus is a private, nonprofit clinic operated entirely on private donations. le provides free physician visits, free laborat0ry A 111()unted member of the U.S. Park Police makes his way thrOtifl.h a a-owd of about I, 000 protesters out work and free medication co the poor. side Bid_~. 31 during a demomtration May 21 by fl,ay rights activists. Police arrested 82 people both 011 "When I joined the clinic in 1977, che ca111p11s and al an NTH rental buildinfl, in Rockville. majority of the patients were prostitutes from rhe 14th St. corridor and homeless people 'S wrm the NIH' from the nearby shelters," says Dollar. -
Bonnie Berger Named ISCB 2019 ISCB Accomplishments by a Senior
F1000Research 2019, 8(ISCB Comm J):721 Last updated: 09 APR 2020 EDITORIAL Bonnie Berger named ISCB 2019 ISCB Accomplishments by a Senior Scientist Award recipient [version 1; peer review: not peer reviewed] Diane Kovats 1, Ron Shamir1,2, Christiana Fogg3 1International Society for Computational Biology, Leesburg, VA, USA 2Blavatnik School of Computer Science, Tel Aviv University, Tel Aviv, Israel 3Freelance Writer, Kensington, USA First published: 23 May 2019, 8(ISCB Comm J):721 ( Not Peer Reviewed v1 https://doi.org/10.12688/f1000research.19219.1) Latest published: 23 May 2019, 8(ISCB Comm J):721 ( This article is an Editorial and has not been subject https://doi.org/10.12688/f1000research.19219.1) to external peer review. Abstract Any comments on the article can be found at the The International Society for Computational Biology (ISCB) honors a leader in the fields of computational biology and bioinformatics each year with the end of the article. Accomplishments by a Senior Scientist Award. This award is the highest honor conferred by ISCB to a scientist who is recognized for significant research, education, and service contributions. Bonnie Berger, Simons Professor of Mathematics and Professor of Electrical Engineering and Computer Science at the Massachusetts Institute of Technology (MIT) is the 2019 recipient of the Accomplishments by a Senior Scientist Award. She is receiving her award and presenting a keynote address at the 2019 Joint International Conference on Intelligent Systems for Molecular Biology/European Conference on Computational Biology in Basel, Switzerland on July 21-25, 2019. Keywords ISCB, Bonnie Berger, Award This article is included in the International Society for Computational Biology Community Journal gateway. -
ISMB 2008 Toronto
ISMB 2008 Toronto The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Linial, Michal, Jill P. Mesirov, B. J. Morrison McKay, and Burkhard Rost. 2008. ISMB 2008 Toronto. PLoS Computational Biology 4(6): e1000094. Published Version doi:10.1371/journal.pcbi.1000094 Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:11213310 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA Message from ISCB ISMB 2008 Toronto Michal Linial1,2, Jill P. Mesirov1,3, BJ Morrison McKay1*, Burkhard Rost1,4 1 International Society for Computational Biology (ISCB), University of California San Diego, La Jolla, California, United States of America, 2 Sudarsky Center, The Hebrew University of Jerusalem, Jerusalem, Israel, 3 Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America, 4 Department of Biochemistry and Molecular Biophysics, Columbia University, New York, New York, United States of America the integration of students, and for the of ISMB. One meeting in South Asia support of young leaders in the field. (InCoB; http://incob.binfo.org.tw/) has ISMB has also become a forum for already been sponsored by ISCB, and reviewing the state of the art in the many another one in North Asia is going to fields of this growing discipline, for follow. ISMB itself has also been held in introducing new directions, and for an- Australia (2003) and Brazil (2006). -
From DNA Sequence to Chromatin Dynamics: Computational Analysis of Transcriptional Regulation
From DNA Sequence to Chromatin Dynamics: Computational Analysis of Transcriptional Regulation Thesis submitted for the degree of “Doctor of Philosophy” by Tommy Kaplan Submitted to the Senate of the Hebrew University May 2008 This work was carried out under the supervision of Prof. Nir Friedman and Prof. Hanah Margalit Abstract All cells of a living organism share the same DNA. Yet, they differ in structure, activities and interactions. These differences arise through a tight regulatory system which activates different genes and pathways to fit the cell’s specialization, condition, and requirements. Deciphering the regulatory mechanisms underlying a living cell is one of the fundamental challenges in biology. Such knowledge will allow us to better understand how cells work, how they respond to external stimuli, what goes wrong in diseases like cancer (which often involves disruption of gene regulation), and how it can be fought. In my PhD, I focus on regulation of gene expression from three perspectives. First, I present an innovative algorithm for identifying the target genes of novel transcription factors, based on their protein sequence (Chapter 1). Second, I consider how several transcription factors cooperate to process external stimuli and alter the behavior of the cell (Chapter 2). Finally, I study how the genomic position of nucleosomes and their covalent modifications modulate the accessibility of DNA to transcription factors, thus adding a fascinating dimension to transcriptional regulation (Chapters 3 and 4). To understand transcriptional regulation, one should first reconstruct the architecture of the cell’s regulatory map, thus identifying which genes are regulated by which transcription factors (TFs). -
DREAM: a Dialogue on Reverse Engineering Assessment And
DREAM:DREAM: aa DialogueDialogue onon ReverseReverse EngineeringEngineering AssessmentAssessment andand MethodsMethods Andrea Califano: MAGNet: Center for the Multiscale Analysis of Genetic and Cellular Networks C2B2: Center for Computational Biology and Bioinformatics ICRC: Irving Cancer RResearchesearch Center Columbia University 1 ReverseReverse EngineeringEngineering • Inference of a predictive (generative) model from data. E.g. argmax[P(Data|Model)] • Assumptions: – Model variables (E.g., DNA, mRNA, Proteins, cellular sub- structures) – Model variable space: At equilibrium, temporal dynamics, spatio- temporal dynamics, etc. – Model variable interactions: probabilistics (linear, non-linear), explicit kinetics, etc. – Model topology: known a-priori, inferred. • Question: – Model ~= Reality? ReverseReverse EngineeringEngineering Data Biological System Expression Proteomics > NFAT ATGATGGATG CTCGCATGAT CGACGATCAG GTGTAGCCTG High-throughput GGCTGGA Structure Sequence Biology … Biochemical Model Validation Control X-Y- Control X+Y+ Y X Z X+Y- X-Y+ Control Control Specific Prediction SomeSome ReverseReverse EngineeringEngineering MethodsMethods • Optimization: High-Dimensional objective function max corresponds to best topology – Liang S, Fuhrman S, Somogyi (REVEAL) – Gat-Viks and R. Shamir (Chain Functions) – Segal E, Shapira M, Regev A, Pe’er D, Botstein D, KolKollerler D, and Friedman N (Prob. Graphical Models) – Jing Yu, V. Anne Smith, Paul P. Wang, Alexander J. Hartemink, Erich D. Jarvis (Dynamic Bayesian Networks) – … • Regression: Create a general model of biochemical interactions and fit the parameters – Gardner TS, di Bernardo D, Lorentz D, and Collins JJ (NIR) – Alberto de la Fuente, Paul Brazhnik, Pedro Mendes – Roven C and Bussemaker H (REDUCE) – … • Probabilistic and Information Theoretic: Compute probability of interaction and filter with statistical criteria – Atul Butte et al. (Relevance Networks) – Gustavo Stolovitzky et al. (Co-Expression Networks) – Andrea CaCalifanolifano et al. -
EMBO Encounters Issue43.Pdf
WINTER 2019/2020 ISSUE 43 Nine group leaders selected Meet the first EMBO Global Investigators PAGE 6 Accelerating scientific publishing EMBO publishing costs Review Commons Making our journals’ platform announced finances public PAGE 3 PAGES 10 – 11 Welcome, Young Investigators! Contract replaces stipend Marking ten years 27 group leaders join the programme EMBO Postdoctoral Fellowships EMBO Molecular Medicine receive an update celebrates anniversary PAGES 4 – 5 PAGE 7 PAGE 13 www.embo.org TABLE OF CONTENTS EMBO NEWS EMBO news Review Commons: accelerating publishing Page 3 EMBO Molecular Medicine turns ten © Marietta Schupp, EMBL Photolab Marietta Schupp, © Page 13 Editorial MBO was founded by scientists for Introducing 27 new Young Investigators scientists. This philosophy remains at Pages 4-5 Ethe heart of our organization until today. EMBO Members are vital in the running of our Meet the first EMBO Global programmes and activities: they screen appli- Accelerating scientific publishing 17 journals on board Investigators cations, interview candidates, decide on fund- Review Commons will manage the transfer of ing, and provide strategic direction. On pages EMBO and ASAPbio announced pre-journal portable review platform the manuscript, reviews, and responses to affili- Page 6 8-9 four members describe why they chose to ate journals. A consortium of seventeen journals New members meet in Heidelberg dedicate their time to an EMBO Committee across six publishers (see box) have joined the Fellowships: from stipends to contracts Pages 14 – 15 and what they took away from the experience. n December 2019, EMBO, in partnership with decide to submit their work to a journal, it will project by committing to use the Review Commons Page 7 When EMBO was created, the focus lay ASAPbio, launched Review Commons, a multi- allow editors to make efficient editorial decisions referee reports for their independent editorial deci- specifically on fostering cross-border inter- Ipublisher partnership which aims to stream- based on existing referee comments. -
Smes in Health Research
SMEs in Health Research Synopses of projects funded through the SME call for “Life sciences, genomics and biotechnology for health” project synopses project Interested in European research? Research*eu is our monthly magazine keeping you in touch with main developments (results, programmes, events, etc.). It is available in English, French, German and Spanish. A free sample copy or free subscription can be obtained from: European Commission Directorate-General for Research Communication Unit B-1049 Brussels Fax (32-2) 29-58220 E-mail: [email protected] Internet: http://ec.europa.eu/research/research-eu European Commisssion Directorate-General for Research Directorate F — Health Unit F1 — Horizontal Aspects and Coordination Contact: Ludovica Serafi ni European Commission Offi ce CDMA 2/179 B-1049 Brussels Tel. (32-2) 29-56759 Fax (32-2) 29-95888 E-mail: ludovica.serafi [email protected] EUROPEAN COMMISSION SMEs in Health Research Synopses of projects funded through the SME call for “Life sciences, genomics and biotechnology for health” (FP6-2005-LIFESCIHEALTH-7) 2008 Directorate-General for Research EUR 23457 EN Health Acknowledgements This catalogue has been produced thanks to the essential input from all project coordinators. Special thanks go to Séverine Romain for her highly professional and dynamic assistance, pivotal for the catalogue completion. I am very grateful to Rachida Ghalouchi, Christel Jaubert, Charles Kelly, Kristina Kyriakopoulou, and to all the officers in Health Directorate responsible for the projects included in this synopses, for their efficient co-operation. Finally, my warmest thanks to Stéphane Hogan, Head of Unit F1, Horizontal aspects and coordination in the Health Directorate, for the commitment and lead provided. -
2011 Gairdner Foundation Annual Report
2011 GAIRDNER FOUNDATION ANNUAL REPORT May 30, 2012 TABLE OF CONTENTS TABLE OF CONTENTS ...................................................................................................................................... 2 HISTORY OF THE GAIRDNER FOUNDATION .............................................................................................. 3 MISSION,VISION ................................................................................................................................................ 4 GOALS .................................................................................................................................................................. 5 MESSAGE FROM THE CHAIR .......................................................................................................................... 6 MESSAGE FROM THE PRESIDENT/SCIENTIFIC DIRECTOR ..................................................................... 7 2011 YEAR IN REVIEW ..................................................................................................................................... 8 REPORT ON 2011 OBJECTIVES ..................................................................................................................... 12 THE YEAR AHEAD: OBJECTIVES FOR 2012 ............................................................................................... 13 2011 SPONSORS ................................................................................................................................................ 14 GOVERNANCE -
A Hidden Markov Model Framewrok for Studying Regulation from Chromatin Through RNA
Submitted in part fulfilment of the requirements for the degree of Master of Science in Computer Science and Computational Biology A Hidden Markov Model Framewrok For Studying Regulation From Chromatin Through RNA Eran Rosenthal Supervisor: Dr. Tommy Kaplan October 2017 Hebrew University of Jerusalem Faculty of Science - Computer Science and Engineering Acknowledgments I would like to deeply thank Tommy, for being a great supervisor, giving very useful advices and scientific tutoring. Tommy has great ability to express complex concepts in simple, illustrative stories, and he introduced me to different kinds of experimental data and computational approaches. I would like also to thank for the members of the lab, for the interesting ideas and discussions. I would like to thank for all the people I had worked in collaboration in my master: • Moshe Oren and Gilad Fuchs for the providing me their experimental data of nascent RNA with RNF20 knockdown for studying the role of monoubiquity- lation of H2B. • Michael Berger and Yuval Malka for the exciting project of studying post- transcriptional 3’UTR cleavage of mRNA transcripts, and for Hanah Margalit and Avital Shimony who helped us in the analysis of miRNA regulation in this project. i Abstract Information flows from DNA to RNA, through transcription, followed by trans- lation of the RNA transcript to protein. A viable cell must have proper regulation on genes expression. There are varieties of regulation mechanisms along the way, which include regulation on the DNA and expression level of genes, post-transcriptional regulation, and post-translation regulation. Most of the cells in our body share the same DNA, but they have different func- tions. -
EYAL AKIVA, Phd
Eyal Akiva CV, Nov. 2017 EYAL AKIVA, PhD Department of Bioengineering and Therapeutic Sciences Phone +1-650-504-9008 University of California at San Francisco Email [email protected] 1700 4th street, San Francisco, Web www.babbittlab.ucsf.edu/eakiva CA, USA EDUCATION 2012-2017 Post-doctoral fellowship at UCSF, Dept. Of Bioengineering and Therapeutic Sciences. Host: Prof. Patricia Babbitt. 2010-2012 Post-doctoral fellowship at UCSF, Dept. Of Bioengineering and Therapeutic Sciences. Host: Prof. Tanja Kortemme. 2004-2010 PhD at The Hebrew University of Jerusalem (Israel), bioinformatics. Host: Prof. Hanah Margalit. “Various Aspects of Modularity in Protein-Protein Interaction". 2001-2004 MSc at The Hebrew University of Jerusalem (Israel), bioinformatics and human genetics. Host: Prof. Muli Ben-Sasson. “Exploiting the Exploiters: Identification of Virus-Host Pep- tide Mimicry as a Source for Modules of Functional Significance”. MAGNA CUM LAUDE. 1997-2000 BSc at Bar-Ilan University (Israel), biology (major) and computer science (minor). Final project advisor: Prof. Ramit Mehr “Modeling the Evolution of the Immune System: a Sim- ulation of the Evolution of Genes that Encode the Variable Regions of Immunoglobulins”. MAGNA CUM LAUDE. 1996-1997 First year of "Industrial Engineering and Management" studies, Tel-Aviv University, Israel. OTHER WORK EXPERIENCE 2000-01 ‘Do-coop technologies’: Team leader and chemistry/microbiology researcher; development of biological applications and manufacture of proprietary nanoparticles (Or Yehuda, Israel and Tel-Aviv University (Prof. Eshel Ben-Jacob’s lab at the school of physics)). FUNDING, HONORS AND AWARDS 2017 Grant: Co-PI, “Utilizing metagenomic sequences for enzyme function prediction”, Joint Genome Institute (US Department of Energy) (http://jgi.doe.gov/doe-user-facilities-ficus- join-forces-to-tackle-biology-big-data/). -
Israeli Settler-Colonialism and Apartheid Over Palestine
Metula Majdal Shams Abil al-Qamh ! Neve Ativ Misgav Am Yuval Nimrod ! Al-Sanbariyya Kfar Gil'adi ZZ Ma'ayan Baruch ! MM Ein Qiniyye ! Dan Sanir Israeli Settler-Colonialism and Apartheid over Palestine Al-Sanbariyya DD Al-Manshiyya ! Dafna ! Mas'ada ! Al-Khisas Khan Al-Duwayr ¥ Huneen Al-Zuq Al-tahtani ! ! ! HaGoshrim Al Mansoura Margaliot Kiryat !Shmona al-Madahel G GLazGzaGza!G G G ! Al Khalsa Buq'ata Ethnic Cleansing and Population Transfer (1948 – present) G GBeGit GHil!GlelG Gal-'A!bisiyya Menara G G G G G G G Odem Qaytiyya Kfar Szold In order to establish exclusive Jewish-Israeli control, Israel has carried out a policy of population transfer. By fostering Jewish G G G!G SG dGe NG ehemia G AGl-NGa'iGmaG G G immigration and settlements, and forcibly displacing indigenous Palestinians, Israel has changed the demographic composition of the ¥ G G G G G G G !Al-Dawwara El-Rom G G G G G GAmG ir country. Today, 70% of Palestinians are refugees and internally displaced persons and approximately one half of the people are in exile G G GKfGar GB!lGumG G G G G G G SGalihiya abroad. None of them are allowed to return. L e b a n o n Shamir U N D ii s e n g a g e m e n tt O b s e rr v a tt ii o n F o rr c e s Al Buwayziyya! NeoG t MG oGrdGecGhaGi G ! G G G!G G G G Al-Hamra G GAl-GZawG iyGa G G ! Khiyam Al Walid Forcible transfer of Palestinians continues until today, mainly in the Southern District (Beersheba Region), the historical, coastal G G G G GAl-GMuGftskhara ! G G G G G G G Lehavot HaBashan Palestinian towns ("mixed towns") and in the occupied West Bank, in particular in the Israeli-prolaimed “greater Jerusalem”, the Jordan G G G G G G G Merom Golan Yiftah G G G G G G G Valley and the southern Hebron District. -
March 22 – 25, 2017 2 0 17 Program Program
Program y t Göttingen Meeting h t 2 of the German Neuroscience Socie 1 7 12th Göttingen Meeting of the 1 0 2 German Neuroscience Society March 22 – 25, 20 17 Program Blueprint for Exceptional Customer Service 7-11 July 2018 | Berlin, Germany Organised by the Federation of European Neuroscience Societies (FENS) Hosted by The German Neuroscience Society Since the inception of Fine Science Tools in 1974, it has been our goal to provide the highest quality surgical and microsurgical instruments to meet your research needs. To be sure we meet your high standards, every product we sell comes with our 100% satisfaction guarantee. If, for any reason, you are not completely satisfied with your purchase, you may return it for a full refund. th The 20 Anniversary of FENS Where European neuroscience meets the world SAVE THE DATE Five good reasons • State-of-the-art neuroscience to attend the • Europe’s foremost neuroscience event Forum in Berlin: • Exchange ideas and network with neuroscientists worldwide • A diverse scientific programme with world-renowned speakers • Visit Berlin - Germany’s capital and cultural centre www.fens.org/2018 FINE SURGICAL INSTRUMENTS FOR RESEARCHTM Visit us at finescience.de or call +49 6221 90 50 50 Program 12th GÖTTINGEN MEETING OF THE GERMAN NEUROSCIENCE SOCIETY 36th GÖTTINGEN NEUROBIOLOGY CONFERENCE March 22 - 25, 2017 1 FiberOptoMeter Anzeige: npi 1 Optogenetic Stimulation & Fluorescence Measurement via the Same Fiber Ca2+ fluorescence signals (OGB-1) Data kindly provided by Dr. A. Stroh and M. Schwalm npi electronic