Reassignment of Species of Paraphyletic Junellia S. L. to The
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Lamiales – Synoptical Classification Vers
Lamiales – Synoptical classification vers. 2.6.2 (in prog.) Updated: 12 April, 2016 A Synoptical Classification of the Lamiales Version 2.6.2 (This is a working document) Compiled by Richard Olmstead With the help of: D. Albach, P. Beardsley, D. Bedigian, B. Bremer, P. Cantino, J. Chau, J. L. Clark, B. Drew, P. Garnock- Jones, S. Grose (Heydler), R. Harley, H.-D. Ihlenfeldt, B. Li, L. Lohmann, S. Mathews, L. McDade, K. Müller, E. Norman, N. O’Leary, B. Oxelman, J. Reveal, R. Scotland, J. Smith, D. Tank, E. Tripp, S. Wagstaff, E. Wallander, A. Weber, A. Wolfe, A. Wortley, N. Young, M. Zjhra, and many others [estimated 25 families, 1041 genera, and ca. 21,878 species in Lamiales] The goal of this project is to produce a working infraordinal classification of the Lamiales to genus with information on distribution and species richness. All recognized taxa will be clades; adherence to Linnaean ranks is optional. Synonymy is very incomplete (comprehensive synonymy is not a goal of the project, but could be incorporated). Although I anticipate producing a publishable version of this classification at a future date, my near- term goal is to produce a web-accessible version, which will be available to the public and which will be updated regularly through input from systematists familiar with taxa within the Lamiales. For further information on the project and to provide information for future versions, please contact R. Olmstead via email at [email protected], or by regular mail at: Department of Biology, Box 355325, University of Washington, Seattle WA 98195, USA. -
Evidence for Holobaraminic Status of the Verbenaceae (Verbena Family)
OPEN ACCESS JCTS Report SERIES B Evidence for Holobaraminic Status of the Verbenaceae (Verbena Family) R.W. Sanders Core Academy of Science, Dayton, TN 37321 Abstract The baraminic status of the Verbenaceae s. str. was investigated using baraminic distance correlations, bootstrap analysis, and multidimensional scaling coordinates. Data were obtained from personal observations and the literature for 80 characters in 25 genera of the Verbenaceae and 19 genera representing 8 near and far outgroup families. Results showed continuity among members of the Verbenaceae and discontinuity of the Verbenaceae from all remaining families, supporting the holobaraminic status of the family. The hypothesis that baramins approximate taxonomic families is corroborated, as is the distinction of the Verbenaceae s. str. from the Lamiaceae, including the subfamilies that have been transferred from the Verbenaceae s. l. to the Lamiaceae by recent cladistic and molecular analyses. Editor: J.W. Francis Received January 26, 2012; Accepted September 13, 2016; Published September 26, 2016 Introduction although a molecular classification at the tribal level has been published recently (Marx et al. 2010; Yuan et al. 2010; O’Leary To date, statistical baraminology has been applied to the study et al. 2012; Lu-Irving & Olmstead 2013). Generally, the family of only 28 families of plants (Wood 2008b, pp. 149-222, 237-239). is characterized by opposite, simple leaves; flowers in elongate or In all cases, these studies were based on publicly available data condensed (head-like) spikes; a weak development of bilateral sets in the conventional literature or online databases. However, floral symmetry; arching corolla tubes; an abruptly flattened and this work needs to be expanded to include plant families for which flaring “trumpet bell” of the corolla; and a fruit with two or four there are no published morphological data sets that are adequate “stones” or nutlets that are sometimes fused (Figure 1). -
A Revised Worldwide Catalogue of Cushion Plants 100 Years After Hauri and Schröter
1914–2014: A revised worldwide catalogue of cushion plants 100 years after Hauri and Schröter Serge Aubert, Florian Boucher, Sébastien Lavergne, Julien Renaud & Philippe Choler Alpine Botany ISSN 1664-2201 Alp Botany DOI 10.1007/s00035-014-0127-x 1 23 Your article is protected by copyright and all rights are held exclusively by Swiss Botanical Society. This e-offprint is for personal use only and shall not be self- archived in electronic repositories. If you wish to self-archive your article, please use the accepted manuscript version for posting on your own website. You may further deposit the accepted manuscript version in any repository, provided it is only made publicly available 12 months after official publication or later and provided acknowledgement is given to the original source of publication and a link is inserted to the published article on Springer's website. The link must be accompanied by the following text: "The final publication is available at link.springer.com”. 1 23 Author's personal copy Alp Botany DOI 10.1007/s00035-014-0127-x ORIGINAL PAPER 1914–2014: A revised worldwide catalogue of cushion plants 100 years after Hauri and Schro¨ter Serge Aubert • Florian Boucher • Se´bastien Lavergne • Julien Renaud • Philippe Choler Received: 6 December 2013 / Accepted: 21 February 2014 Ó Swiss Botanical Society 2014 Abstract Cushion plants have long fascinated botanists forms. A website has been launched to display the cata- for their ability to cope with extreme environments in most logue and enable a collaborative improvement of the mountains and arctic regions of the world. -
Evolution of Morphological Traits in Verbenaceae
American Journal of Botany 99(11): 1778–1792. 2012. E VOLUTION OF MORPHOLOGICAL TRAITS IN VERBENACEAE 1 N ATALY O ’ L EARY 2,6 , C AROLINA I SABEL C ALVIÑO 3 , S USANA M ARTÍNEZ 4 , P AT L U-IRVING 5 , R ICHARD G. OLMSTEAD 5 , AND M ARIA E MA M ÚLGURA 2 2 Instituto de Botánica Darwinion, Labardén 200, CC 22, San Isidro, Buenos Aires, Argentina; 3 INIBIOMA, CONICET- Universidad Nacional del Comahue, Bariloche, Argentina; 4 Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Argentina; and 5 Department of Biology and Burke Museum, University of Washington, Seattle, Washington 98195 USA. • Premise of the study: A new infrafamilial circumscription of the Verbenaceae with eight tribes: Casselieae, Citharexyleae, Duranteae, Lantaneae, Neospartoneae, Petreeae, Priveae, and Verbeneae, has been recently proposed, on the basis of molecular phylogenetic studies. Two genera, Dipyrena and Rhaphithamnus , remain unplaced. The aim of this work is to reconstruct the evolutionary history of morphological characters traditionally employed in the classifi cation of the Verbenaceae, with special attention to tribes Verbeneae and Lantaneae. • Methods: Twenty-one characters, related to habit and vegetative morphology, infl orescence and fl oral morphology, ovary and fruit morphology, as well as chromosome number, were optimized over a molecular phylogeny of Verbenaceae. • Key Results: All tribes are supported by at least one morphological trait except tribes Duranteae and Citharexyleae. Suffrutescent habit, sessile fl owers, and four cluses are synapomorphies for tribe Verbeneae. Gynoecium with short style and entire stigma are synapomorphic traits for tribe Lantaneae. Sessile fl owers and unicarpellate ovaries are morphological synapomorphies for the new tribe Neospartoneae. -
1 Updates Required to Plant Systematics: A
Updates Required to Plant Systematics: A Phylogenetic Approach, Third Edition, as a Result of Recent Publications (Updated June 13, 2014) As necessitated by recent publications, updates to the Third Edition of our textbook will be provided in this document. It is hoped that this list will facilitate the efficient incorporation new systematic information into systematic courses in which our textbook is used. Plant systematics is a dynamic field, and new information on phylogenetic relationships is constantly being published. Thus, it is not surprising that even introductory texts require constant modification in order to stay current. The updates are organized by chapter and page number. Some require only minor changes, as indicated below, while others will require more extensive modifications of the wording in the text or figures, and in such cases we have presented here only a summary of the major points. The eventual fourth edition will, of course, contain many organizational changes not treated below. Page iv: Meriania hernandii Meriania hernandoi Chapter 1. Page 12, in Literature Cited, replace “Stuessy, T. F. 1990” with “Stuessy, T. F. 2009,” which is the second edition of this book. Stuessy, T. F. 2009. Plant taxonomy: The systematic evaluation of comparative data. 2nd ed. Columbia University Press, New York. Chapter 2. Page 37, column 1, line 5: Stuessy 1983, 1990;… Stuessy 1983, 2009; … And in Literature Cited, replace “Stuessy 1990” with: Stuessy, T. F. 2009. Plant taxonomy: The systematic evaluation of comparative data. 2nd ed. Columbia University Press, New York. Chapter 4. Page 58, column 1, line 5: and Dilcher 1974). …, Dilcher 1974, and Ellis et al. -
(Verbenaceae) Laura A. Frost a Dissertation Submit
Phylogeny and biogeography of Neotropical flowering plant tribe Citharexyleae (Verbenaceae) Laura A. Frost A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy University of Washington 2018 Reading Committee: Richard Olmstead, Chair Caroline Strömberg John Klicka Program Authorized to Offer Degree: Biology ©Copyright 2018 Laura A. Frost University of Washington Abstract Phylogeny and biogeography of Neotropical flowering plant tribe Citharexyleae (Verbenaceae) Laura A. Frost Chair of the Supervisory Committee: Richard Olmstead Biology The New World tropics, or Neotropics, located within tropical latitudes of North and South America, are one of the most diverse ecoregion in the world. However, this diversity is poorly understood in terms of described biodiversity—species numbers are uncertain and collection records are depauperate for many groups distributed in remote locations or dense forest—and patterns of evolution contributing to high diversity—factors underlying speciation in lineages are not well understood. A molecular phylogenetic and systematic study of the Neotropical flowering plant tribe Citharexyleae in the Verbena family (Verbenaceae), which also originated and diversified primarily in the Neotropics, was undertaken in order to describe diversity and understand patterns of evolution in an understudied Neotropical lineage. Chapter 1 comprises a systematic study of tribe Citharexyleae, which describes relationships between the three genera in the tribe (Baillonia (1 species), Citharexylum (ca. 70 species), and Rehdera (2 species)) as well as relationships within Citharexylum, the largest genus. Baillonia is included in Citharexylum and Rehdera is retained distinct. A subgeneric classification including six subgenera system is proposed for Citharexylum, and morphological characters associated with each major clade described. -
The Phylogenetic Potential of Orbicules in Angiosperms
− pISSN 1225-8318 Korean J. Pl. Taxon. 48(1): 9 23 (2018) eISSN 2466-1546 https://doi.org/10.11110/kjpt.2018.48.1.9 Korean Journal of ORIGINAL ARTICLE Plant Taxonomy The phylogenetic potential of orbicules in angiosperms Hye-Kyoung MOON* Department of Biology, Kyung Hee University, Seoul 02447, Korea (Received 21 November 2017; Revised 26 January 2018; Accepted 21 March 2018) ABSTRACT: The distribution of orbicules was investigated for eleven taxa of six genera in Lamiaceae and four taxa of three genera in Verbenaceae using scanning electron microscopy. A literature survey to evaluate the phy- logenetic potential of the orbicules and their possible correlations with tapetum types was also conducted. The orbicules are consistently absent in all investigated taxa of Lamiaceae, while small orbicules of an average size of less than 1 µm are densely distributed in Verbenaceae. In fact, orbicules appear consistently in 123 of 150 angiosperm families when investigated in at least one species. Thus, the distribution patterns of orbicules could be a useful diagnostic character in angiosperms. In addition, orbicules occur in 84% taxa of the secretory tape- tum type, while they are commonly absent in the amoeboid tapetum type (ca. 80%). The presence of orbicules may be correlated with the secretory tapetum type. However, the study of orbicules is restricted in 150 families and the tapetum type within these families can be applied for 92 families out of a total of 416 angiosperm fam- ilies. Thus, further investigation of orbicules is necessary in extended taxa to address the questions pertaining to orbicules. Keywords: orbicules, scanning electron microscopy, tapetum type, angiosperms Pollen morphological traits have been considered as useful shape of orbicules has phylogenetic significance, so orbicules diagnostic characters, since they often provide important clues are drawing keen attention in that they could be the characters to identify plant species and infer their evolutionary history. -
(PPR) Genes As Plant Phylogenetic Tools: Phylogeny of Verbenaceae and the Verbena Complex
Molecular Phylogenetics and Evolution 54 (2010) 23–35 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev An empirical demonstration of using pentatricopeptide repeat (PPR) genes as plant phylogenetic tools: Phylogeny of Verbenaceae and the Verbena complex Yao-Wu Yuan *, Chang Liu, Hannah E. Marx, Richard G. Olmstead Department of Biology, University of Washington, Seattle, WA 98195, USA article info abstract Article history: The pentatricopeptide repeat (PPR) gene family, with hundreds of members in land plant genomes, has Received 20 January 2009 been recognized as a tremendous resource for plant phylogenetic studies based on publicly available Revised 28 August 2009 genomic data from model organisms. However, whether this appealing nuclear gene marker system Accepted 28 August 2009 can be readily applied to non-model organisms remains questionable, particularly given the potential Available online 3 September 2009 uncertainties in designing specific primers to only amplify the locus of interest from the sea of PPR genes. Here we demonstrate empirically the use of PPR genes in the family Verbenaceae and the Verbena com- Keywords: plex. We also lay out a general scheme to design locus-specific primers to amplify and sequence PPR PPR genes genes in non-model organisms. Intergeneric relationships within the family Verbenaceae were fully Nuclear gene marker Phylogeny resolved with strong support. Relationships among the closely related genera within the Verbena complex Non-model organisms and among some species groups within each genus were also well resolved, but resolution among very Verbenaceae closely related species was limited. Our results suggest that PPR genes can be readily employed in Verbena complex non-model organisms. -
1914–2014: a Revised Worldwide Catalogue of Cushion Plants 100 Years After Hauri and Schro¨Ter
Alp Botany (2014) 124:59–70 DOI 10.1007/s00035-014-0127-x ORIGINAL PAPER 1914–2014: A revised worldwide catalogue of cushion plants 100 years after Hauri and Schro¨ter Serge Aubert • Florian Boucher • Se´bastien Lavergne • Julien Renaud • Philippe Choler Received: 6 December 2013 / Accepted: 21 February 2014 / Published online: 22 March 2014 Ó Swiss Botanical Society 2014 Abstract Cushion plants have long fascinated botanists forms. A website has been launched to display the cata- for their ability to cope with extreme environments in most logue and enable a collaborative improvement of the mountains and arctic regions of the world. One century database (http://www.cushionplants.eu/). The distribution ago, a first worldwide catalogue of species forming cush- of the species is presented on the basis of the world geo- ions was published by Hauri and Schro¨ter (Bot Jahrb Syst graphical scheme for recording plant distributions and Pflanzengesch Pflanzengeogr 50:618–656, 1914). Here, we global biodiversity information facility data. This cata- defined a simplified typology of cushion plants and updated logue will serve as a reference database for further analyses the worldwide catalogue of cushion species, along with on the biogeography and evolutionary history of cushion information on their geographic distribution. This compi- plants and arctico-alpine biotas. lation was based on available information in floras and catalogues but also in efloras and virtual encyclopedias, Keywords Cushion plants Á Alpine plants Á which were screened using automated database queries. Biogeography Á Adaptive convergence Á Plant life form Á We established a list of 1,309 cushion-forming species Biodiversity informatics distributed in 272 genera and 63 families of angiosperms. -
A Targeted Subgenomic Approach for Phylogenomics Based on Microfluidic PCR and High
bioRxiv preprint doi: https://doi.org/10.1101/021246; this version posted June 19, 2015. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. A targeted subgenomic approach for phylogenomics based on microfluidic PCR and high throughput sequencing Simon Uribe-Convers1,2,3,¶,*, Matthew L. Settles1,2,¶, David C. Tank1,2,3 1Department of Biological Sciences, University of Idaho, Moscow, Idaho, USA 2Institute for Bioinformatics and Evolutionary Studies, University of Idaho, Moscow, Idaho, USA 3Stillinger Herbarium, University of Idaho, Moscow, Idaho, USA *Corresponding author: [email protected] (SUC) ¶These authors contributed equally to this work. bioRxiv preprint doi: https://doi.org/10.1101/021246; this version posted June 19, 2015. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Advances in high-throughput sequencing (HTS) have allowed researchers to obtain large amounts of biological sequence information at speeds and costs unimaginable only a decade ago. Phylogenetics, and the study of evolution in general, is quickly migrating towards using HTS to generate larger and more complex molecular datasets. In this paper, we present a method that utilizes microfluidic PCR and HTS to generate large amounts of sequence data suitable for phylogenetic analyses. The approach uses a Fluidigm microfluidic PCR array and two sets of PCR primers to simultaneously amplify 48 target regions across 48 samples, incorporating sample-specific barcodes and HTS adapters (2,304 unique amplicons per microfluidic array). -
An Update of the Verbenaceae Genera and Species Numbers
Plant Ecology and Evolution 154 (1): 80–86, 2021 https://doi.org/10.5091/plecevo.2021.1821 RESEARCH ARTICLE An update of the Verbenaceae genera and species numbers Pedro Henrique Cardoso1, Nataly O’Leary2, Richard G. Olmstead3, Pablo Moroni2 & Verônica A. Thode4,* 1Universidade Federal do Rio de Janeiro, Museu Nacional, Departamento de Botânica, Quinta da Boa Vista, CEP 20940-040, Rio de Janeiro, RJ, Brazil 2Instituto de Botánica Darwinion (ANCEFN-CONICET), Labardén 200, CC 22, B1642HYD, San Isidro, Buenos Aires, Argentina 3Department of Biology and Burke Museum, University of Washington, Seattle, WA 98195 USA 4Universidade Federal do Rio Grande do Sul, Departamento de Botânica, Programa de Pós-Graduação em Botânica, CEP 91501-970, Porto Alegre, RS, Brazil *Corresponding author: [email protected] Background and aims – The last comprehensive study that estimated the number of Verbenaceae genera and species was published in 2004, and included 34 genera and around 1200 species. Since then, several publications based on morphology and/or molecular data have proposed important changes within the family. Due to the lack of updated literature to cite when referring to the number of Verbenaceae taxa, a review of these estimates is necessary. Key results and conclusion – We present a detailed list of genera currently accepted in Verbenaceae with the number of species contained in each and compare our numbers with the previous estimate. In addition, we indicate the geographic distribution and the most recent important taxonomic or phylogenetic works for each genus. Our compilation shows that Verbenaceae have 32 genera and 800 species currently accepted. This work provides up-to-date numbers and brings a holistic view of the family. -
Infrageneric Classification of Verbena (Verbenaceae)
Nesom, G.L. 2010. Infrageneric classification of Verbena (Verbenaceae). Phytoneuron 2010-11: 1–15. Mailed 13 May 2010. INFRAGENERIC CLASSIFICATION OF VERBENA (VERBENACEAE) GUY L. N ESOM 2925 Hartwood Drive Fort Worth, TX 76109, USA www.guynesom.com ABSTRACT The genus Verbena sensu stricto in the present account includes 70 species (6 currently in the process of description). The genus is divided into three sections: 1. Sect. VERBENA , type V. officinalis (including 10 series: ser. Verbena ; ser. Haleae Nesom, ser. nov., type V. halei ; ser. Plicatae Nesom, ser. nov., type V. plicata ; ser. Simplices Nesom, ser. nov., type V. simplex ; ser. Connaticarpae Nesom, ser. nov., type: V. carnea ; ser. Leptostachyae Schauer, lectotype (designated here) V. urticifolia ; ser. Candelabrae Nesom, ser. nov., type V. stricta ; ser. Bracteatae Nesom, ser. nov., type V. bracteata ; ser. Californicae Nesom, ser. nov., type V. californica ; and ser. Tricesimae Nesom, ser. nov., type V. canescens ); 2. Sect. AMPHEPEIROS Nesom, sect. nov., type V. glabrata (including 2 series: ser. Austrobrasilienses Nesom, ser. nov., type V. hirta ; and ser. Pacificae Nesom, ser. nov., type V. glabrata ); and 3. Sect. VERBENACA Walpers, lectotype (designated here) V. bonariensis (including 2 series: ser. Pachystachyae Schauer, type V. bonariensis ; and ser. Litorales Nesom, ser. nov., type V. litoralis ). The three sections are delimited primarily on the basis of inflorescence structure. KEY WORDS : Verbena , Verbenaceae, infrageneric classification, sections, series The only inclusive, critical study of North American Verbena L. sensu stricto has been provided by Perry (1933). Moldenke’s contributions “toward a monograph of the genus” (1961– 1964) covered all of the taxa, but they were oriented toward nomenclature and literature and did not provide evaluation of patterns of variation; nor did Moldenke provide a key to species, except in a few regional floristic accounts.