ICMB-II Abstract Book
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Analysis of Synonymous Codon Usage Patterns in Sixty-Four Different Bivalve Species
Analysis of synonymous codon usage patterns in sixty-four diVerent bivalve species Marco Gerdol1, Gianluca De Moro1, Paola Venier2 and Alberto Pallavicini1 1 Department of Life Sciences, University of Trieste, Trieste, Italy 2 Department of Biology, University of Padova, Padova, Italy ABSTRACT Synonymous codon usage bias (CUB) is a defined as the non-random usage of codons encoding the same amino acid across diVerent genomes. This phenomenon is common to all organisms and the real weight of the many factors involved in its shaping still remains to be fully determined. So far, relatively little attention has been put in the analysis of CUB in bivalve mollusks due to the limited genomic data available. Taking advantage of the massive sequence data generated from next generation sequencing projects, we explored codon preferences in 64 diVerent species pertaining to the six major evolutionary lineages in Bivalvia. We detected remarkable diVerences across species, which are only partially dependent on phylogeny. While the intensity of CUB is mild in most organisms, a heterogeneous group of species (including Arcida and Mytilida, among the others) display higher bias and a strong preference for AT-ending codons. We show that the relative strength and direction of mutational bias, selection for translational eYciency and for translational accuracy contribute to the establishment of synonymous codon usage in bivalves. Although many aspects underlying bivalve CUB still remain obscure, we provide for the first time an overview of this phenomenon -
Geometric Morphometric Analysis Reveals That the Shells of Male and Female Siphon Whelks Penion Chathamensis Are the Same Size and Shape Felix Vaux A, James S
MOLLUSCAN RESEARCH, 2017 http://dx.doi.org/10.1080/13235818.2017.1279474 Geometric morphometric analysis reveals that the shells of male and female siphon whelks Penion chathamensis are the same size and shape Felix Vaux a, James S. Cramptonb,c, Bruce A. Marshalld, Steven A. Trewicka and Mary Morgan-Richardsa aEcology Group, Institute of Agriculture and Environment, Massey University, Palmerston North, New Zealand; bGNS Science, Lower Hutt, New Zealand; cSchool of Geography, Environment & Earth Sciences, Victoria University, Wellington, New Zealand; dMuseum of New Zealand Te Papa Tongarewa, Wellington, New Zealand ABSTRACT ARTICLE HISTORY Secondary sexual dimorphism can make the discrimination of intra and interspecific variation Received 11 July 2016 difficult, causing the identification of evolutionary lineages and classification of species to be Final version received challenging, particularly in palaeontology. Yet sexual dimorphism is an understudied research 14 December 2016 topic in dioecious marine snails. We use landmark-based geometric morphometric analysis to KEYWORDS investigate whether there is sexual dimorphism in the shell morphology of the siphon whelk Buccinulidae; conchology; Penion chathamensis. In contrast to studies of other snails, results strongly indicate that there fossil; geometric is no difference in the shape or size of shells between the sexes. A comparison of morphometrics; mating; P. chathamensis and a related species demonstrates that this result is unlikely to reflect a paleontology; reproduction; limitation of the method. The possibility that sexual dimorphism is not exhibited by at least secondary sexual some species of Penion is advantageous from a palaeontological perspective as there is a dimorphism; snail; true whelk rich fossil record for the genus across the Southern Hemisphere. -
W7192e19.Pdf
click for previous page 952 Shrimps and Prawns Sicyoniidae SICYONIIDAE Rock shrimps iagnostic characters: Body generally Drobust, with shell very hard, of “stony” grooves appearance; abdomen often with deep grooves and numerous tubercles. Rostrum well developed and extending beyond eyes, always bearing more than 3 upper teeth (in- cluding those on carapace); base of eyestalk with styliform projection on inner surface, but without tubercle on inner border. Both upper and lower antennular flagella of similar length, attached to tip of antennular peduncle. 1 Carapace lacks both postorbital and postantennal spines, cervical groove in- distinct or absent. Exopod present only on first maxilliped. All 5 pairs of legs well devel- 2 oped, fourth leg bearing a single well-devel- 3rd and 4th pleopods 4 single-branched oped arthrobranch (hidden beneath 3 carapace). In males, endopod of second pair 5 of pleopods (abdominal appendages) with appendix masculina only. Third and fourth pleopods single-branched. Telson generally armed with a pair of fixed lateral spines. Colour: body colour varies from dark brown to reddish; often with distinct spots or colour markings on carapace and/or abdomen - such colour markings are specific and very useful in distinguishing the species. Habitat, biology, and fisheries: All members of this family are marine and can be found from shallow to deep waters (to depths of more than 400 m). They are all benthic and occur on both soft and hard bottoms. Their sizes are generally small, about 2 to 8 cm, but some species can reach a body length over 15 cm. The sexes are easily distinguished by the presence of a large copulatory organ (petasma) on the first pair of pleopods of males, while the females have the posterior thoracic sternites modified into a large sperm receptacle process (thelycum) which holds the spermatophores or sperm sacs (usually whitish or yellowish in colour) after mating. -
History of Quagga Mussels
History of Quagga Mussels By Christine Moskell WS ‘08 Zebra mussels (Dreissena polymorpha) have long been the poster child of invasive species in Seneca Lake. Most people don’t even realize there are other varieties of mussels inhabiting the lake. Today, the tide is changing for zebra mussels in Seneca Lake, as another invasive mussel species has displaced the zebra mussels. Meet the quagga mussel. A close relative to zebra mussels, Quagga mussels (Dreissena bugensis) invaded the Finger Lakes in the same way as zebra mussels. Native to Ukraine, quagga mussels were first transported to the United States when foreign ships unknowingly carrying microscopic quagga larvae discharged their ballast water into the Great Lakes. Quagga mussels were first observed in the United States in the Great Lakes in September 1989, but were not at first considered a different species from zebra mussels.1 In 1991 during a zebra mussel survey near Palmyra, New York, researchers Dr. Bernie May of Cornell University and Dr. Ellen Marsden of the Illinois Natural Survey discovered a mussel with a different genotype than the zebra mussels.2 Genetic tests confirmed that this unique mussel was indeed a different species of Dreissena. The mussel was named “quagga” after an extinct African relative of the zebra. 3 Like zebra mussels, quagga mussels spread to the Finger Lakes via the waterways connected to the Great Lakes. The quagga mussel first arrived in Seneca Lake in 2000.4 Since their arrival to the United States, quagga mussels have expanded their populations throughout the country. Quagga mussels have been established in four of the five Great Lakes; Lake Michigan, Lake Huron, Lake Erie and Lake Ontario. -
CROSS-SHELF TRANSPORT of PLANKTONIC LARVAE of INNER SHELF BENTHIC INVERTEBRATES LAURA ANN BRINK a THESIS Presented to the Depart
CROSS-SHELF TRANSPORT OF PLANKTONIC LARVAE OF INNER SHELF BENTHIC INVERTEBRATES by LAURA ANN BRINK I, A THESIS Presented to the Department ofBiology and the Graduate School of the University of Oregon in partial fulfillment of the requirements for the degree of Master ofScience March 1997 11 "Cross-Shelf Transport of Planktonic Larvae of Inner Shelf Benthic Invertebrates," a thesis prepared by Laura Ann Brink in partial fulfillment of the requirements for the Master of Science degree in the Department of Biology. This thesis has been approved and accepted by: the Examining Committee Date Committee in charge: Dr. Alan Shanks, Chair Dr. Steve Rumrill Dr. Lynda Shapiro Accepted by: Vice Provost and Dean of the Graduate School 111 An Abstract of the Thesis of Laura Ann Brink for the degree of Master of Science in the Department of Biology to be taken March 1997 Title: CROSS-SHELF TRANSPORT OF PLANKTONIC LARVAE OF INNER SHELF Approved: -l~P:::::::::~~~~'.1------- Ian Shanks There are two schools of thought on the affect of the physical environment in larval transport and dispersal. One is that larvae act as passive particles, being transported solely by physical means. The other idea is that through behavioral changes, larvae can alter their transport so as to improve their chances of successfully settling. Both cross-shelf and 23 hour vertical sampling of meroplanktonic larvae was conducted to investigate the hypothesis that larvae act as passive particles, being dispersed by the currents. The lengths ofbivalve larvae were also measured to determine if there were ontogenetic differences in the vertical distributions of these larvae. -
FAU Institutional Repository
FAU Institutional Repository http://purl.fcla.edu/fau/fauir This paper was submitted by the faculty of FAU’s Harbor Branch Oceanographic Institute. Notice: ©1991 Elsevier B.V. The final published version of this manuscript is available at http://www.sciencedirect.com/science/journal/00448486 and may be cited as: Gustafson, R. G., Creswell, R. L., Jacobsen, T. R., & Vaughan, D. E. (1991). Larval biology and mariculture of the angelwing clam, Cyrtopleura costata. Aquaculture, 95(3-4), 257-279. doi:10.1016/0044-8486(91)90092-L Aquaculture, 95 (1991) 257-279 257 Elsevier Science Publishers B.V .. Amsterdam Larval biology and mariculture ofthe angelwing clam, Cyrtopleura costata KG. Gustafson"·l, R.L. Creswell", T.R. Jacobsen" and D.E. Vaughan" "Division olCoastal. Environmental and .iquacultural SCiCIICCS, Harbor Branch Oceanographic Institution, 5600 Old DixlC Highway, Fort Pierce, FL 34946, U,)',I "Department otMarinc and Coastal SCiCIICCS, Rutgers Shellfish Research l.aboratorv. New Jcrscv .tgnrultural Evperimcnt Station, Rutgers University, Port Norris, NJ 08349, USI (Accepted 7 November 1990) ABSTRACT Gustafson. R.G .. Creswell, R.L. Jacobsen. T.R. and Vaughan. D.E .. 1991. Larval biology and mari culture of the angclwing clam. Cvrtoplcura costata. Aquaculture, 95: 25 7~2 79. The deep-burrowing angclwing clam. Cvrtoplcura costata (Family Pholadidac ). occurs in shallow water from Massachusetts. USA. to Brazil and has been a commercially harvested food product in Cuba and Puerto Rico. This study examines its potential for commercial aquaculture development. The combined effects of salinity and temperature on survival and shell growth to metamorphosis of angclwing larvae were studied using a 5 X 5 factorial design: salinities ranged from 15 to 35%0 S. -
Lake Powell Food Web Structure: Predicting Effects of Quagga Mussel Joshua A
Brigham Young University BYU ScholarsArchive All Theses and Dissertations 2017-04-01 Lake Powell Food Web Structure: Predicting Effects of Quagga Mussel Joshua A. Verde Brigham Young University Follow this and additional works at: https://scholarsarchive.byu.edu/etd Part of the Biology Commons BYU ScholarsArchive Citation Verde, Joshua A., "Lake Powell Food Web Structure: Predicting Effects of Quagga Mussel" (2017). All Theses and Dissertations. 6702. https://scholarsarchive.byu.edu/etd/6702 This Thesis is brought to you for free and open access by BYU ScholarsArchive. It has been accepted for inclusion in All Theses and Dissertations by an authorized administrator of BYU ScholarsArchive. For more information, please contact [email protected], [email protected]. Lake Powell Food Web Structure: Predicting Effects of Quagga Mussel Joshua A. Verde A thesis submitted to the faculty of Brigham Young University in partial fulfillment of the requirements for the degree of Master of Science Mark C. Belk, Chair Dennis K. Shiozawa Steven L. Peck Department of Biology Brigham Young University Copyright © 2017 Joshua A. Verde All Rights Reserved ABSTRACT Lake Powell Food Web Structure: Predicting Effects of Quagga Mussel Joshua A. Verde Department of Biology, BYU Master of Science Food webs in aquatic ecosystems can be dramatically altered by invasive species. Quagga mussels are prevalent invaders that compete with existing species and disrupt nutrient cycling. In 2012, the Quagga Mussel (Dreissena rostriformus bugensis) was introduced into Lake Powell and is expected to move throughout the reservoir in the near future. Stable isotope analysis is a powerful tool for characterizing food webs and trophic interactions. -
Molluscs 2018 Program and Abstract Handbook
© Malacological Society of Australia 2018 Abstracts may be reproduced provided that appropriate acknowledgement is given and the reference cited. Requests for this book should be made to: Malacological Society of Australia information at: http://www.malsocaus.org/contactus.htm Program and Abstracts for the 2018 meeting of the Malacological Society of Australasia (2nd to 5th December, Wellington, New Zealand) Cover Photo and Design: Kerry Walton Logo Design: Platon Vafiadis Compilation and layout: Julie Burton, Carmel McDougall and Kerry Walton Publication Date: November 2018 Recommended Retail Price: $25.00 AUD Malacological Society of Australasia, Triennial Conference Table of contents The Conference Venue ................................................................................................................... 3 Venue floorplan ............................................................................................................................. 3 General Information ....................................................................................................................... 4 Molluscs 2018 Organising Committee ............................................................................................. 6 Our Sponsors .................................................................................................................................. 6 MSA Annual General Meeting and Election of Office Bearers ......................................................... 7 President’s Welcome ..................................................................................................................... -
Population Ecology of the Gulf Ribbed Mussel Across a Salinity Gradient: Recruitment, Growth and Density 1 2 3, AARON HONIG, JOHN SUPAN, and MEGAN LA PEYRE
Population ecology of the gulf ribbed mussel across a salinity gradient: recruitment, growth and density 1 2 3, AARON HONIG, JOHN SUPAN, AND MEGAN LA PEYRE 1School of Renewable Natural Resources, Louisiana State University Agricultural Center, Baton Rouge, Louisiana 70803 USA 2Louisiana Sea Grant, Louisiana State University Agricultural Center, Baton Rouge, Louisiana 70803 USA 3U.S. Geological Survey, Louisiana Cooperative Fish and Wildlife Research Unit, School of Renewable Natural Resources, Louisiana State University Agricultural Center, Baton Rouge, Louisiana 70803 USA Citation: Honig, A., J. Supan, and M. La Peyre. 2015. Population ecology of the gulf ribbed mussel across a salinity gradient: recruitment, growth and density. Ecosphere 6(11):226. http://dx.doi.org/10.1890/ES14-00499.1 Abstract. Benthic intertidal bivalves play an essential role in estuarine ecosystems by contributing to habitat provision, water filtration, and promoting productivity. As such, changes that impact population distributions and persistence of local bivalve populations may have large ecosystem level consequences. Recruitment, growth, mortality, population size structure and density of the gulf coast ribbed mussel, Geukensia granosissima, were examined across a salinity gradient in southeastern Louisiana. Data were collected along 100-m transects at interior and edge marsh plots located at duplicate sites in upper (salinity ;4 psu), central (salinity ;8 psu) and lower (salinity ;15 psu) Barataria Bay, Louisiana, U.S.A. Growth, mortality and recruitment were measured in established plots from April through November 2012. Mussel densities were greatest within the middle bay (salinity ;8) regardless of flooding regime, but strongly associated with highest stem densities of Juncus roemerianus vegetation. Mussel recruitment, growth, size and survival were significantly higher at mid and high salinity marsh edge sites as compared to all interior marsh and low salinity sites. -
Benthic Data Sheet
DEMERSAL OTTER/BEAM TRAWL DATA SHEET RESEARCH VESSEL_____________________(1/20/13 Version*) CLASS__________________;DATE_____________;NAME:___________________________; DEVICE DETAILS_________ LOCATION (OVERBOARD): LAT_______________________; LONG______________________________ LOCATION (AT DEPTH): LAT_______________________; LONG_____________________________; DEPTH___________ LOCATION (START UP): LAT_______________________; LONG______________________________;.DEPTH__________ LOCATION (ONBOARD): LAT_______________________; LONG______________________________ TIME: IN______AT DEPTH_______START UP_______SURFACE_______.DURATION OF TRAWL________; SHIP SPEED__________; WEATHER__________________; SEA STATE__________________; AIR TEMP______________ SURFACE TEMP__________; PHYS. OCE. NOTES______________________; NOTES_______________________________ INVERTEBRATES Phylum Porifera Order Pennatulacea (sea pens) Class Calcarea __________________________________ Family Stachyptilidae Class Demospongiae (Vase sponge) _________________ Stachyptilum superbum_____________________ Class Hexactinellida (Hyalospongia- glass sponge) Suborder Subsessiliflorae Subclass Hexasterophora Family Pennatulidae Order Hexactinosida Ptilosarcus gurneyi________________________ Family Aphrocallistidae Family Virgulariidae Aphrocallistes vastus ______________________ Acanthoptilum sp. ________________________ Other__________________________________________ Stylatula elongata_________________________ Phylum Cnidaria (Coelenterata) Virgularia sp.____________________________ Other_______________________________________ -
Comparison of Geukensia Demissa Populations in Rhode Island Fringe Salt Marshes with Varying Nitrogen Loads
MARINE ECOLOGY PROGRESS SERIES Vol. 320: 101–108, 2006 Published August 29 Mar Ecol Prog Ser Comparison of Geukensia demissa populations in Rhode Island fringe salt marshes with varying nitrogen loads Marnita M. Chintala*, Cathleen Wigand, Glen Thursby United States Environmental Protection Agency, Office of Research and Development, National Health and Environmental Effects Research Laboratory, Atlantic Ecology Division, 27 Tarzwell Drive, Narragansett, Rhode Island 02882, USA ABSTRACT: Increased residential development in coastal watersheds has led to increases in anthro- pogenic nitrogen inputs into estuaries. Sessile bivalves are good candidate organisms to examine nitrogen enrichment effects on consumers because they contribute significantly to material transport from pelagic to benthic systems. We examined condition index (CI), individual dry weight, density, and total biomass in the ribbed mussel Geukensia demissa (Dillwyn), from 10 marsh sites within Narragansett Bay, Rhode Island, subject to varying watershed sub-basin nitrogen loadings. We tested hypotheses that condition and population attributes of G. demissa are driven by watershed sub-basin nitrogen load. There was no clear relationship between the mussel CI and nitrogen load. G. demissa density and total biomass did increase significantly with increases in nitrogen load. Responses in individual mussel dry weight might be an indirect effect of increased nitrogen loading due to eutrophication-induced changes in food availability. Increased nitrogen loads could be increasing -
New Records of Marine Ornamental Shrimps (Decapoda: Stenopodidea and Caridea) from the Gulf of Mannar, Tamil Nadu, India
12 6 2010 the journal of biodiversity data 7 December 2016 Check List NOTES ON GEOGRAPHIC DISTRIBUTION Check List 12(6): 2010, 7 December 2016 doi: http://dx.doi.org/10.15560/12.6.2010 ISSN 1809-127X © 2016 Check List and Authors New records of marine ornamental shrimps (Decapoda: Stenopodidea and Caridea) from the Gulf of Mannar, Tamil Nadu, India Sanjeevi Prakash1, 3, Thipramalai Thangappan Ajith Kumar2* and Thanumalaya Subramoniam1 1 Centre for Climate Change Studies, Sathyabama University, Jeppiaar Nagar, Rajiv Gandhi Salai, Chennai - 600119, Tamil Nadu, India 2 ICAR - National Bureau of Fish Genetic Resources, Canal Ring Road, Dilkusha Post, Lucknow - 226002, Uttar Pradesh, India 3 Current address: Department of Biological Sciences, Clemson University, Clemson, SC 29634, USA * Corresponding author. E-mail: [email protected] Abstract: Marine ornamental shrimps found in from coral reefs have greatly affected their diversity and tropical coral reef waters are widely recognized for the distribution (Wabnitz et al. 2003). aquarium trade. Our survey of ornamental shrimps in Among all the ornamental shrimps, Stenopus the Gulf of Mannar, Tamil Nadu (India) has found three spp. and Lysmata spp. are the most attractive and species, which we identify as Stenopus hispidus Olivier, extensively traded organisms in the marine aquarium 1811, Lysmata debelius Bruce, 1983, and L. amboinensis industry (Calado 2008). Interestingly, these shrimps are De Man, 1888, based on morphology and color pattern. associates of fishes, in particular, the groupers and giant These shrimps are recorded for the first time in Gulf of moray eels (Gymnothorax spp.). These shrimps display a Mannar, Tamil Nadu.