WO 2018/110672 Al 21 June 2018 (21.06.2018) W !P O PCT

Total Page:16

File Type:pdf, Size:1020Kb

WO 2018/110672 Al 21 June 2018 (21.06.2018) W !P O PCT (12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property Organization International Bureau (10) International Publication Number (43) International Publication Date WO 2018/110672 Al 21 June 2018 (21.06.2018) W !P O PCT (51) International Patent Classification: G01N 33/50 (2006.01) G01N 33/566 (2006.01) (21) International Application Number: PCT/JP20 17/044979 (22) International Filing Date: 14 December 2017 (14.12.2017) (25) Filing Language: English (26) Publication Language: English (30) Priority Data: 16306680.6 14 December 2016 (14.12.2016) EP (71) Applicant: TAKASAGO INTERNATIONAL CORPO¬ RATION [JP/JP]; 37-1, Kamata 5-chome, Ota-ku, Tokyo, 1448721 (JP). (72) Inventors: WARR Jonathan; 167 boulevard Malesherbes, Paris, 75017 (FR). WINNIG Marcel; c/o Axxam SpA, OpenZone-via Meucci 3, Bresso-Milan, 20091 (IT). (74) Agent: EIKOH PATENT FIRM, P.C.; Toranomon East Bldg. 10F, 7-13, Nishi-Shimbashi 1-chome, Minato-ku, Tokyo, 1050003 (JP). (81) Designated States (unless otherwise indicated, for every kind of national protection available): AE, AG, AL, AM, AO, AT, AU, AZ, BA, BB, BG, BH, BN, BR, BW, BY, BZ, CA, CH, CL, CN, CO, CR, CU, CZ, DE, DJ, DK, DM, DO, DZ, EC, EE, EG, ES, FI, GB, GD, GE, GH, GM, GT, HN, HR, HU, ID, IL, IN, IR, IS, JO, JP, KE, KG, KH, KN, KP, KR, KW, KZ, LA, LC, LK, LR, LS, LU, LY, MA, MD, ME, MG, MK, MN, MW, MX, MY, MZ, NA, NG, NI, NO, NZ, OM, PA, PE, PG, PH, PL, PT, QA, RO, RS, RU, RW, SA, SC, SD, SE, SG, SK, SL, SM, ST, SV, SY, TH, TJ, TM, TN, TR, TT, TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, ZW. (84) Designated States (unless otherwise indicated, for every kind of regional protection available): ARIPO (BW, GH, GM, KE, LR, LS, MW, MZ, NA, RW, SD, SL, ST, SZ, TZ, UG, ZM, ZW), Eurasian (AM, AZ, BY, KG, KZ, RU, TJ, TM), European (AL, AT, BE, BG, CH, CY, CZ, DE, DK, EE, ES, FI, FR, GB, GR, HR, HU, IE, IS, IT, LT, LU, LV, MC, MK, MT, NL, NO, PL, PT, RO, RS, SE, SI, SK, SM, TR), OAPI (BF, BJ, CF, CG, CI, CM, GA, GN, GQ, GW, KM, ML, MR, NE, SN, TD, TG). Published: — with international search report (Art. 21(3)) — with sequence listing part of description (Rule 5.2(a)) l o - 54 tle METHOD FOR IDENTIFYING MALODOUR COUNTERACTANTS 00 (57) Abstract: The invention relates to a method for determining whether a test compound can counteract malodour from a sulphur © odorant. The method includes contacting the test compound and the sulphur odorant with an olfactory receptor OR4E2, and comparing the binding of the OR4E2 to the sulphur odorant, or the activity of the OR4E2, in the presence and in the absence of the test compound. Description Title of Invention: METHOD FOR IDENTIFYING MALODOUR COUNTERACTANTS Technical Field [0001] The invention relates to a method for identifying compounds that can counteract malodours, notably malodours from sulphur odorants. Background Art [0002] Humans perceive an immense variety of chemicals as having distinct odours. Odour perception initiates in the nose, where odorants are detected by a large family of olfactory receptors (ORs). [0003] The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCRs) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. [0004] Volatile compounds of natural or artificial origin can be detected by a specific set of G-protein coupled receptors located in the respiratory epithelium. It has been proposed that one odorant is capable of activating multiple olfactory receptors (ORs) and that one OR is capable of detecting different odorants (NPL 1). The human genome contains -400 intact olfactory receptor genes belonging to two main classes. Class I, "fish-like receptors" ORs presumably detect water soluble odorants, whereas class II "tetrapod specific receptors" ORs are supposed to respond to airborne volatiles (NPL 2). [0005] A mouse olfactory receptor was recently identified, which responds to (methylthio)methanethiol in heterologous cells (NPL 3). [0006] Human body odour is generated from natural materials present on the skin surface and secretions from the sweat and sebaceous glands. These materials are converted to characteristic odourous compound through oxidative degradation or metabolism by skin microbes. [0007] Human apocrine sweat gland secretions are known to produce a highly individual scent upon the action of skin flora that are present in high concentrations in the armpit. Volatile steroids, aliphatic, branched and linear fatty acids have been reported as major contributors to human axillary malodour. 3-hydroxy-3-methyl-2-hexanoic acid was in particular found to originate from a glutamine conjugate present in axillary secretions (NPL 4). [0008] Sulphur-containing compounds have also been found to be contributors of human axillary malodour (NPL 4; NPL 5). Sulphur-containing compounds have also been identified on worn laundry from the catabolism of L-methionine (NPL 6), and from urine (NPL 7). [0009] Sulphur containing materials are also sometimes deliberately added to consumer or industrial products as active ingredients, for example thioglycolic acid or salts and cysteine for hair treatment products, and give the product an undesirable base odour that needs to be overcome. Citation List Non Patent Literature [0010] NPL 1: Malnic B, Hirono J, Sato T, Buck LB. "Combinatorial receptor codes for odors." Cell 1999 96(5):713-23 NPL 2: Glusman G, Bahar A, Sharon D, Pilpel Y, White J, Lancet D. "The olfactory receptor gene superfamily: data mining, classification, and nomenclature. Mamm." Genome 2000 11(1 1): 1016-23 NPL 3: Duan X, Block E, Li Z, Connelly T, Zhang J, Huang Z, Su X, Pan Y, Wu L, Chi Q, Thomas S, Zhang S, Ma M, Matsunami H, Chen GQ, Zhuang H. "Crucial role of copper in detection of metal-coordinating odorants." Proc. Natl. Acad. Sci. USA 2012 109(9):3492-7 NPL 4: Troccaz. "The biosynthetic pathway of sulphur-containing molecules in Human Axillary Malodor: from precursors to odorous volatiles." These de doctorat : Univ. Geneve, 2009, no. Sc. 4102 (https://archive-ouverte.unige.en/unige:4563) NPL 5: Natsch A, Schmid J, Flachsmann F. "Identification of odiferous sulfany- lalkanols in human axilla secretions and their formation through cleavage of cysteine precursors by a C-S lyase isolated from axilla bacteria." Chemistry & Biodiversity 2004 1(7): 1058- 1072 NPL 6: Denawaka C, Fowlis, I, Dean J. "Source, impact and removal of malodour from soiled clothing." Journal of Chromatography A 2016 (1438): 216-225 NPL 7: Troccaz M, Niclass Y, Anziani P, Starkenmann C. "The influence of thermal reaction and microbial transformation on the odour of human urine." Flavour & Fragrance Journal 2013 (28) : 200-211. NPL 8: Li S, Ahmed L, Zhang R, Pan Y, Matsunami H, Burger JL, Block E, Batista VS, Zhuang H. "Smelling sulfur: copper and silver regulate the response of human odorant receptor OR2T1 1 to low-molecular- weight thiols." Journal of the American Chemical Society 2016 (doi:10.1021/jacs6b06983) NPL 9: Noe F, Polster J, Geithe C, Kotthoff M, Schieberle P, Krautwurst D. OR2M3: "A highly specific and narrowly tuned human odorant receptor for the sensitive detection of onion key food odorant 3-mercapto-2-methylpentan-l-ol." Chemical Sciences 2016, 00:1-16 (doi:10.1093/chemse/bjwll8) NPL 10: Saito H, Kubota M, Roberts RW, Chi Q, Matsunami H. "RTP family members induce functional expression of mammalian odorant receptors." Cell 2004 119(5):679-91 NPL 11: Von Dannecker LE, Mercadante AF, Malnic B. "Ric-8B, an olfactory putative GTP exchange factor, amplifies signal transduction through the olfactory- specific G-protein Galphaolf." J Neurosci. 2005 Apr 13;25(15):3793-800 NPL 12: Von Dannecker LE, Mercadante AF, Malnic B. "Ric-8B promotes functional expression of odorant receptors." Proc. Natl. Acad. Sci. USA 2006 103(24):9310-4 NPL 13: Bufe B, Hofmann T, Krautwurst D, Raguse JD, Meyerhof W. "The human TAS2R16 receptor mediates bitter taste in response to beta-glucopyranosides." Nat. Genet. 2002 32(3):397-401 Summary of Invention Technical Problem [001 1] It has now been found that a human olfactory receptor, OR4E2, responds to sulphur odorants. Accordingly the use of this polypeptide is contemplated for identifying compounds which can counteract the perception of malodour from sulphur odorants. Solution to Problem [0012] In one aspect, the invention relates to a method for determining whether a test compound can counteract the perceived (smelt) malodour from a sulphur odorant, the method comprising the steps of: a) contacting the OR4E2 polypeptide with a sulphur odorant, in the presence and in the absence of the test compound under conditions permitting the binding of said sulphur odorant to OR4E2 or permitting the activation of OR4E2 by said sulphur odorant; and b) comparing the binding of OR4E2 to said sulphur odorant, or the activity of OR4E2, in the presence and in the absence of the test compound, wherein an inhibition of the binding or a decrease in activity in the presence of the test compound, relative to the binding or activity in the absence of the test compound, identifies the test compound as a compound that can counteract the perceived malodour from the sulphur odorant. [0013] In another aspect, the invention relates to an anti-malodour composition comprising a compound identified by the above-mentioned method. [0014] In another aspect, the invention relates to household, laundry, personal care, animal care or industrial products comprising a compound identified by the above-mentioned method, or an anti-malodour composition as defined above.
Recommended publications
  • Human Artificial Chromosome (Hac) Vector
    Europäisches Patentamt *EP001559782A1* (19) European Patent Office Office européen des brevets (11) EP 1 559 782 A1 (12) EUROPEAN PATENT APPLICATION published in accordance with Art. 158(3) EPC (43) Date of publication: (51) Int Cl.7: C12N 15/09, C12N 1/15, 03.08.2005 Bulletin 2005/31 C12N 1/19, C12N 1/21, C12N 5/10, C12P 21/02 (21) Application number: 03751334.8 (86) International application number: (22) Date of filing: 03.10.2003 PCT/JP2003/012734 (87) International publication number: WO 2004/031385 (15.04.2004 Gazette 2004/16) (84) Designated Contracting States: • KATOH, Motonobu, Tottori University AT BE BG CH CY CZ DE DK EE ES FI FR GB GR Yonago-shi, Tottori 683-8503 (JP) HU IE IT LI LU MC NL PT RO SE SI SK TR • TOMIZUKA, Kazuma, Designated Extension States: Kirin Beer Kabushiki Kaisha AL LT LV MK Takashi-shi, Gunma 370-1295 (JP) • KUROIWA, Yoshimi, (30) Priority: 04.10.2002 JP 2002292853 Kirin Beer Kabushiki Kaisha Takasaki-shi, Gunma 370-1295 (JP) (71) Applicant: KIRIN BEER KABUSHIKI KAISHA • KAKEDA, Minoru, Kirin Beer Kabushiki Kaisha Tokyo 104-8288 (JP) Takasaki-shi, Gunma 370-1295 (JP) (72) Inventors: (74) Representative: HOFFMANN - EITLE • OSHIMURA, Mitsuo, Tottori University Patent- und Rechtsanwälte Yonago-shi, Tottori 683-8503 (JP) Arabellastrasse 4 81925 München (DE) (54) HUMAN ARTIFICIAL CHROMOSOME (HAC) VECTOR (57) The present invention relates to a human arti- ing a cell which expresses foreign DNA. Furthermore, ficial chromosome (HAC) vector and a method for pro- the present invention relates to a method for producing ducing the same.
    [Show full text]
  • LETTER Doi:10.1038/Nature09515
    LETTER doi:10.1038/nature09515 Distant metastasis occurs late during the genetic evolution of pancreatic cancer Shinichi Yachida1*, Siaˆn Jones2*, Ivana Bozic3, Tibor Antal3,4, Rebecca Leary2, Baojin Fu1, Mihoko Kamiyama1, Ralph H. Hruban1,5, James R. Eshleman1, Martin A. Nowak3, Victor E. Velculescu2, Kenneth W. Kinzler2, Bert Vogelstein2 & Christine A. Iacobuzio-Donahue1,5,6 Metastasis, the dissemination and growth of neoplastic cells in an were present in the primary pancreatic tumours from which the meta- organ distinct from that in which they originated1,2, is the most stases arose. A small number of these samples of interest were cell lines common cause of death in cancer patients. This is particularly true or xenografts, similar to the index lesions, whereas the majority were for pancreatic cancers, where most patients are diagnosed with fresh-frozen tissues that contained admixed neoplastic, stromal, metastatic disease and few show a sustained response to chemo- inflammatory, endothelial and normal epithelial cells (Fig. 1a). Each therapy or radiation therapy3. Whether the dismal prognosis of tissue sample was therefore microdissected to minimize contaminat- patients with pancreatic cancer compared to patients with other ing non-neoplastic elements before purifying DNA. types of cancer is a result of late diagnosis or early dissemination of Two categories of mutations were identified (Fig. 1b). The first and disease to distant organs is not known. Here we rely on data gen- largest category corresponded to those mutations present in all samples erated by sequencing the genomes of seven pancreatic cancer meta- from a given patient (‘founder’ mutations, mean of 64%, range 48–83% stases to evaluate the clonal relationships among primary and of all mutations per patient; Fig.
    [Show full text]
  • Whole Exome Sequencing in Families at High Risk for Hodgkin Lymphoma: Identification of a Predisposing Mutation in the KDR Gene
    Hodgkin Lymphoma SUPPLEMENTARY APPENDIX Whole exome sequencing in families at high risk for Hodgkin lymphoma: identification of a predisposing mutation in the KDR gene Melissa Rotunno, 1 Mary L. McMaster, 1 Joseph Boland, 2 Sara Bass, 2 Xijun Zhang, 2 Laurie Burdett, 2 Belynda Hicks, 2 Sarangan Ravichandran, 3 Brian T. Luke, 3 Meredith Yeager, 2 Laura Fontaine, 4 Paula L. Hyland, 1 Alisa M. Goldstein, 1 NCI DCEG Cancer Sequencing Working Group, NCI DCEG Cancer Genomics Research Laboratory, Stephen J. Chanock, 5 Neil E. Caporaso, 1 Margaret A. Tucker, 6 and Lynn R. Goldin 1 1Genetic Epidemiology Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, NIH, Bethesda, MD; 2Cancer Genomics Research Laboratory, Division of Cancer Epidemiology and Genetics, National Cancer Institute, NIH, Bethesda, MD; 3Ad - vanced Biomedical Computing Center, Leidos Biomedical Research Inc.; Frederick National Laboratory for Cancer Research, Frederick, MD; 4Westat, Inc., Rockville MD; 5Division of Cancer Epidemiology and Genetics, National Cancer Institute, NIH, Bethesda, MD; and 6Human Genetics Program, Division of Cancer Epidemiology and Genetics, National Cancer Institute, NIH, Bethesda, MD, USA ©2016 Ferrata Storti Foundation. This is an open-access paper. doi:10.3324/haematol.2015.135475 Received: August 19, 2015. Accepted: January 7, 2016. Pre-published: June 13, 2016. Correspondence: [email protected] Supplemental Author Information: NCI DCEG Cancer Sequencing Working Group: Mark H. Greene, Allan Hildesheim, Nan Hu, Maria Theresa Landi, Jennifer Loud, Phuong Mai, Lisa Mirabello, Lindsay Morton, Dilys Parry, Anand Pathak, Douglas R. Stewart, Philip R. Taylor, Geoffrey S. Tobias, Xiaohong R. Yang, Guoqin Yu NCI DCEG Cancer Genomics Research Laboratory: Salma Chowdhury, Michael Cullen, Casey Dagnall, Herbert Higson, Amy A.
    [Show full text]
  • European Patent Office of Opposition to That Patent, in Accordance with the Implementing Regulations
    (19) TZZ Z_T (11) EP 2 884 280 B1 (12) EUROPEAN PATENT SPECIFICATION (45) Date of publication and mention (51) Int Cl.: of the grant of the patent: G01N 33/566 (2006.01) 09.05.2018 Bulletin 2018/19 (21) Application number: 13197310.9 (22) Date of filing: 15.12.2013 (54) Method for evaluating the scent performance of perfumes and perfume mixtures Verfahren zur Bewertung des Duftverhaltens von Duftstoffen und Duftstoffmischungen Procédé d’evaluation de senteur performance du parfums et mixtures de parfums (84) Designated Contracting States: (56) References cited: AL AT BE BG CH CY CZ DE DK EE ES FI FR GB WO-A2-03/091388 GR HR HU IE IS IT LI LT LU LV MC MK MT NL NO PL PT RO RS SE SI SK SM TR • BAGHAEI KAVEH A: "Deorphanization of human olfactory receptors by luciferase and Ca-imaging (43) Date of publication of application: methods.",METHODS IN MOLECULAR BIOLOGY 17.06.2015 Bulletin 2015/25 (CLIFTON, N.J.) 2013, vol. 1003, 19 June 2013 (2013-06-19), pages229-238, XP008168583, ISSN: (73) Proprietor: Symrise AG 1940-6029 37603 Holzminden (DE) • KAVEH BAGHAEI ET AL: "Olfactory receptors coded by segregating pseudo genes and (72) Inventors: odorants with known specific anosmia.", 33RD • Hatt, Hanns ANNUAL MEETING OF THE ASSOCIATION FOR 44789 Bochum (DE) CHEMORECEPTION, 1 April 2011 (2011-04-01), • Gisselmann, Günter XP055111507, 58456 Witten (DE) • TOUHARA ET AL: "Deorphanizing vertebrate • Ashtibaghaei, Kaveh olfactory receptors: Recent advances in 44801 Bochum (DE) odorant-response assays", NEUROCHEMISTRY • Panten, Johannes INTERNATIONAL, PERGAMON PRESS, 37671 Höxter (DE) OXFORD, GB, vol.
    [Show full text]
  • A Multispecific Investigation of the Metal Effect in Mammalian Odorant
    Chemical Senses, 2018, Vol 00, 1–10 doi:10.1093/chemse/bjy022 Original Article Advance Access Publication Date: 06 April 2018 Original Article A Multispecific Investigation of the Metal Effect in Mammalian Odorant Receptors for Sulfur- Containing Compounds Ruina Zhang1,*, Yi Pan1,*, Lucky Ahmed2, Eric Block3, Yuetian Zhang1, Victor S. Batista2 and Hanyi Zhuang1,4 1Department of Pathophysiology, Key Laboratory of Cell Differentiation and Apoptosis of the Chinese Ministry of Education, Shanghai Jiaotong University School of Medicine, 227 South Chongqing Road, Huangpu District, Shanghai 200025, P. R. China, 2Department of Chemistry, Yale University, 225 Prospect Street, New Haven, CT 06520, USA, 3Department of Chemistry, University at Albany, State University of New York, 1400 Washington Avenue Albany, NY 12222, USA and 4Institute of Health Sciences, Shanghai Jiaotong University School of Medicine/Shanghai Institutes for Biological Sciences of Chinese Academy of Sciences, 320 Yueyang Road, Xuhui District, Shanghai 200031, P. R. China *These authors contributed equally to the work. Correspondence to be sent to: Hanyi Zhuang, Department of Pathophysiology, Key Laboratory of Cell Differentiation and Apoptosis of the Chinese Ministry of Education, Shanghai Jiaotong University School of Medicine, Shanghai 200025, P. R. China. e-mail: [email protected] and Victor S. Batista, Department of Chemistry, Yale University, New Haven, CT 06520, USA. e-mail: [email protected] Editorial Decision 15 March 2018. Abstract Metal-coordinating compounds are generally known to have strong smells, a phenomenon that can be attributed to the fact that odorant receptors for intense-smelling compounds, such as those containing sulfur, may be metalloproteins. We previously identified a mouse odorant receptor (OR), Olfr1509, that requires copper ions for sensitive detection of a series of metal-coordinating odorants, including (methylthio)methanethiol (MTMT), a strong-smelling component of male mouse urine that attracts female mice.
    [Show full text]
  • Misexpression of Cancer/Testis (Ct) Genes in Tumor Cells and the Potential Role of Dream Complex and the Retinoblastoma Protein Rb in Soma-To-Germline Transformation
    Michigan Technological University Digital Commons @ Michigan Tech Dissertations, Master's Theses and Master's Reports 2019 MISEXPRESSION OF CANCER/TESTIS (CT) GENES IN TUMOR CELLS AND THE POTENTIAL ROLE OF DREAM COMPLEX AND THE RETINOBLASTOMA PROTEIN RB IN SOMA-TO-GERMLINE TRANSFORMATION SABHA M. ALHEWAT Michigan Technological University, [email protected] Copyright 2019 SABHA M. ALHEWAT Recommended Citation ALHEWAT, SABHA M., "MISEXPRESSION OF CANCER/TESTIS (CT) GENES IN TUMOR CELLS AND THE POTENTIAL ROLE OF DREAM COMPLEX AND THE RETINOBLASTOMA PROTEIN RB IN SOMA-TO- GERMLINE TRANSFORMATION", Open Access Master's Thesis, Michigan Technological University, 2019. https://doi.org/10.37099/mtu.dc.etdr/933 Follow this and additional works at: https://digitalcommons.mtu.edu/etdr Part of the Cancer Biology Commons, and the Cell Biology Commons MISEXPRESSION OF CANCER/TESTIS (CT) GENES IN TUMOR CELLS AND THE POTENTIAL ROLE OF DREAM COMPLEX AND THE RETINOBLASTOMA PROTEIN RB IN SOMA-TO-GERMLINE TRANSFORMATION By Sabha Salem Alhewati A THESIS Submitted in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE In Biological Sciences MICHIGAN TECHNOLOGICAL UNIVERSITY 2019 © 2019 Sabha Alhewati This thesis has been approved in partial fulfillment of the requirements for the Degree of MASTER OF SCIENCE in Biological Sciences. Department of Biological Sciences Thesis Advisor: Paul Goetsch. Committee Member: Ebenezer Tumban. Committee Member: Zhiying Shan. Department Chair: Chandrashekhar Joshi. Table of Contents List of figures .......................................................................................................................v
    [Show full text]
  • Olfactory Receptors in Non-Chemosensory Tissues
    BMB Reports Invited Mini Review Olfactory receptors in non-chemosensory tissues NaNa Kang & JaeHyung Koo* Department of Brain Science, Daegu Gyeongbuk Institute of Science and Technology (DGIST), Daegu 711-873, Korea Olfactory receptors (ORs) detect volatile chemicals that lead to freezing behavior (3-5). the initial perception of smell in the brain. The olfactory re- ORs are localized in the cilia of olfactory sensory neurons ceptor (OR) is the first protein that recognizes odorants in the (OSNs) in the olfactory epithelium (OE) and are activated by olfactory signal pathway and it is present in over 1,000 genes chemical cues, typically odorants at the molecular level, in mice. It is also the largest member of the G protein-coupled which lead to the perception of smell in the brain (6). receptors (GPCRs). Most ORs are extensively expressed in the Tremendous research was conducted since Buck and Axel iso- nasal olfactory epithelium where they perform the appropriate lated ORs as an OE-specific expression in 1991 (7). OR genes, physiological functions that fit their location. However, recent the largest family among the G protein-coupled receptors whole-genome sequencing shows that ORs have been found (GPCRs) (8), constitute more than 1,000 genes on the mouse outside of the olfactory system, suggesting that ORs may play chromosome (9, 10) and more than 450 genes in the human an important role in the ectopic expression of non-chemo- genome (11, 12). sensory tissues. The ectopic expressions of ORs and their phys- Odorant activation shows a distinct signal transduction iological functions have attracted more attention recently since pathway for odorant perception.
    [Show full text]
  • Molecular Correlates of Metastasis by Systematic Pan-Cancer Analysis Across the Cancer Genome Atlas
    Author Manuscript Published OnlineFirst on November 6, 2018; DOI: 10.1158/1541-7786.MCR-18-0601 Author manuscripts have been peer reviewed and accepted for publication but have not yet been edited. Molecular correlates of metastasis by systematic pan-cancer analysis across The Cancer Genome Atlas Fengju Chen1*, Yiqun Zhang1*, Sooryanarayana Varambally2,3, Chad J. Creighton1,4,5,6 1. Dan L. Duncan Comprehensive Cancer Center Division of Biostatistics, Baylor College of Medicine, Houston, TX, USA. 2. Comprehensive Cancer Center, University of Alabama at Birmingham, Birmingham, AL 35233, USA 3. Molecular and Cellular Pathology, Department of Pathology, University of Alabama at Birmingham, Birmingham, AL 35233, USA 4. Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA 5. Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA 6. Department of Medicine, Baylor College of Medicine, Houston, TX, USA * co-first authors Running title: Pan-cancer metastasis correlates Abbreviations: TCGA, The Cancer Genome Atlas; RNA-seq, RNA sequencing; RPPA, reverse- phase protein arrays Correspondence to: Chad J. Creighton ([email protected]) One Baylor Plaza, MS305 Houston, TX 77030 Disclosure of potential conflicts of interest: The authors have no conflicts of interest. 1 Downloaded from mcr.aacrjournals.org on September 28, 2021. © 2018 American Association for Cancer Research. Author Manuscript Published OnlineFirst on November 6, 2018; DOI: 10.1158/1541-7786.MCR-18-0601 Author manuscripts have been peer reviewed and accepted for publication but have not yet been edited. Abstract Tumor metastasis is a major contributor to cancer patient mortality, but the process remains poorly understood.
    [Show full text]
  • Prognostic Classifier Based on Genome-Wide DNA Methylation Profiling in Well-Differentiated Thyroid Tumors
    CLINICAL RESEARCH ARTICLE Downloaded from https://academic.oup.com/jcem/article-abstract/102/11/4089/4082866 by Universidade Estadual Paulista J�lio de Mesquita Filho user on 06 May 2019 Prognostic Classifier Based on Genome-Wide DNA Methylation Profiling in Well-Differentiated Thyroid Tumors Mariana Bisarro dos Reis,1,2* Mateus Camargo Barros-Filho,1* F´abio Albuquerque Marchi,1 Caroline Moraes Beltrami,1 Hellen Kuasne,1 Clovis ´ Antonioˆ Lopes Pinto,3 Srikant Ambatipudi,4,5 Zdenko Herceg,4 Luiz Paulo Kowalski,6 and Silvia Regina Rogatto2,7 1International Research Center, CIPE, A.C. Camargo Cancer Center and National Institute of Science and Technology in Oncogenomics, S~ao Paulo 01509-010, SP, Brazil; 2Department of Urology, Faculty of Medicine, UNESP, S~ao Paulo State University, Botucatu 18618-970, SP, Brazil; 3Department of Pathology, A.C. Camargo Cancer Center, S~ao Paulo 01509-010, SP, Brazil; 4Epigenetics Group; International Agency for Research on Cancer (IARC), Lyon 69372, France; 5MRC Integrative Epidemiology Unit, University of Bristol, Bristol BS8 1TH, United Kingdom; 6Department of Head and Neck Surgery and Otorhinolaryngology, A.C. Camargo Cancer Center, S~ao Paulo 01509-010, SP, Brazil; and 7Department of Clinical Genetics, Vejle Hospital and Institute of Regional Health Research, University of Southern Denmark, Vejle, 7100, Denmark Context: Even though the majority of well-differentiated thyroid carcinoma (WDTC) is indolent, a number of cases display an aggressive behavior. Cumulative evidence suggests that the deregulation of DNA methylation has the potential to point out molecular markers associated with worse prognosis. Objective: To identify a prognostic epigenetic signature in thyroid cancer.
    [Show full text]
  • 9-Marie-Francoise Ritz MS
    Send Orders for Reprints to [email protected] 478 Current Neurovascular Research, 2019, 16, 478-490 RESEARCH ARTICLE Combined Transcriptomic and Proteomic Analyses of Cerebral Frontal Lobe Tissue Identified RNA Metabolism Dysregulation as One Potential Pathogenic Mechanism in Cerebral Autosomal Dominant Arteriopathy with Subcortical Infarcts and Leukoencephalopathy (CADASIL) Marie-Françoise Ritz1,*, Paul Jenoe2, Leo Bonati3, Stefan Engelter3,4, Philippe Lyrer3 and Nils Peters3,4 1Department of Biomedicine, Brain Tumor Biology Laboratory, University of Basel, and University Hospital of Basel, Hebelstrasse 20, 4031 Basel, Switzerland; 2Proteomics Core Facility, Biocenter, University of Basel, Klingelbergstrasse 50/70, 4056 Basel, Switzerland; 3Department of Neurology and Stroke Center, University Hospital Basel and University of Basel, Petersgraben 4, 4031 Basel, Switzerland; 4Neurorehabilitation Unit, University of Basel and University Center for Medicine of Aging, Felix Platter Hospital, Burgfelderstrasse 101, 4055 Basel, Switzerland Abstract: Background: Cerebral small vessel disease (SVD) is an important cause of stroke and vascular cognitive impairment (VCI), leading to subcortical ischemic vascular dementia. As a he- reditary form of SVD with early onset, cerebral autosomal dominant arteriopathy with subcortical infarcts and leukoencephalopathy (CADASIL) represents a pure form of SVD and may thus serve as a model disease for SVD. To date, underlying molecular mechanisms linking vascular pathol- ogy and subsequent neuronal damage in SVD are incompletely understood. A R T I C L E H I S T O R Y Objective: We performed comparative transcriptional profiling microarray and proteomic analyses Received: October 01, 2019 on post-mortem frontal lobe specimen from 2 CADASIL patients and 5 non neurologically dis- Revised: October 11, 2019 Accepted: October 15, 2019 eased controls in order to identify dysregulated pathways potentially involved in the development DOI: of tissue damage in CADASIL.
    [Show full text]
  • Chr CNV Start CNV Stop Gene Gene Feature 1 37261312 37269719
    chr CNV start CNV stop Gene Gene feature 1 37261312 37269719 Tmem131 closest upstream gene 1 37261312 37269719 Cnga3 closest downstream gene 1 41160869 41180390 Tmem182 closest upstream gene 1 41160869 41180390 2610017I09Rik closest downstream gene 1 66835123 66839616 1110028C15Rik in region 2 88714200 88719211 Olfr1206 closest upstream gene 2 88714200 88719211 Olfr1208 closest downstream gene 2 154840037 154846228 a in region 3 30065831 30417157 Mecom closest upstream gene 3 30065831 30417157 Arpm1 closest downstream gene 3 35476875 35495913 Sox2ot closest upstream gene 3 35476875 35495913 Atp11b closest downstream gene 3 39563408 39598697 Fat4 closest upstream gene 3 39563408 39598697 Intu closest downstream gene 3 94246481 94410611 Celf3 in region 3 94246481 94410611 Mrpl9 in region 3 94246481 94410611 Riiad1 in region 3 94246481 94410611 Snx27 in region 3 104311901 104319916 Lrig2 in region 3 144613709 144619149 Clca6 in region 3 144613709 144619149 Clca6 in region 4 108673 137301 Vmn1r2 closest downstream gene 4 3353037 5882883 6330407A03Rik in region 4 3353037 5882883 Chchd7 in region 4 3353037 5882883 Fam110b in region 4 3353037 5882883 Impad1 in region 4 3353037 5882883 Lyn in region 4 3353037 5882883 Mos in region 4 3353037 5882883 Penk in region 4 3353037 5882883 Plag1 in region 4 3353037 5882883 Rps20 in region 4 3353037 5882883 Sdr16c5 in region 4 3353037 5882883 Sdr16c6 in region 4 3353037 5882883 Tgs1 in region 4 3353037 5882883 Tmem68 in region 4 5919294 6304249 Cyp7a1 in region 4 5919294 6304249 Sdcbp in region 4 5919294
    [Show full text]
  • 1 Copper-Mediated Thiol Potentiation and Mutagenesis-Guided Modeling Suggest a Highly Conserved Copper Binding Motif in Human OR
    Copper-mediated thiol potentiation and mutagenesis-guided modeling suggest a highly conserved copper binding motif in human OR2M3 Franziska Haag1, Lucky Ahmed2, Krystle Reiss2, Eric Block3, Victor S. Batista2 and Dietmar Krautwurst1 1Leibniz-Institute for Food Systems Biology at the Technical University of Munich, Lise-Meitner-Str. 34, D-85354 Freising, Germany 2Department of Chemistry, Yale University, New Haven, CT 06520, United States 3Department of Chemistry, University at Albany, State University of New York, Albany, NY 12222, United States Contents: Table S1: Oligonucleotides for molecular cloning of odorant receptors investigated. ........................... 2 Table S2: Oligonucleotides for Homo sapiens OR2M3 site-directed mutagenesis. ................................ 2 Table S3: Oligonucleotides for Homo sapiens OR2W1 site-directed mutagenesis. ................................ 4 Table S4: Vector internal oligonucleotides for pi2-dk (39aa rho-tag). .................................................... 4 Table S5: NCBI reference sequences of olfactory receptor genes investigated. ..................................... 5 Table S6: EC50 values and relative amplitudes for 3-mercapto-2-methylpentan-1-ol on OR2M3 wild type in the absence and presence of different heavy metals. ................................................................ 7 Table S7: EC50 values and relative amplitudes for OR2M3 wild type in the absence and presence of different concentrations of Cu2+. ...........................................................................................................
    [Show full text]