A Freshwater Sponge Misunderstood for a Marine New Genus and Species
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Taxonomy and Diversity of the Sponge Fauna from Walters Shoal, a Shallow Seamount in the Western Indian Ocean Region
Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region By Robyn Pauline Payne A thesis submitted in partial fulfilment of the requirements for the degree of Magister Scientiae in the Department of Biodiversity and Conservation Biology, University of the Western Cape. Supervisors: Dr Toufiek Samaai Prof. Mark J. Gibbons Dr Wayne K. Florence The financial assistance of the National Research Foundation (NRF) towards this research is hereby acknowledged. Opinions expressed and conclusions arrived at, are those of the author and are not necessarily to be attributed to the NRF. December 2015 Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region Robyn Pauline Payne Keywords Indian Ocean Seamount Walters Shoal Sponges Taxonomy Systematics Diversity Biogeography ii Abstract Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region R. P. Payne MSc Thesis, Department of Biodiversity and Conservation Biology, University of the Western Cape. Seamounts are poorly understood ubiquitous undersea features, with less than 4% sampled for scientific purposes globally. Consequently, the fauna associated with seamounts in the Indian Ocean remains largely unknown, with less than 300 species recorded. One such feature within this region is Walters Shoal, a shallow seamount located on the South Madagascar Ridge, which is situated approximately 400 nautical miles south of Madagascar and 600 nautical miles east of South Africa. Even though it penetrates the euphotic zone (summit is 15 m below the sea surface) and is protected by the Southern Indian Ocean Deep- Sea Fishers Association, there is a paucity of biodiversity and oceanographic data. -
Proposal for a Revised Classification of the Demospongiae (Porifera) Christine Morrow1 and Paco Cárdenas2,3*
Morrow and Cárdenas Frontiers in Zoology (2015) 12:7 DOI 10.1186/s12983-015-0099-8 DEBATE Open Access Proposal for a revised classification of the Demospongiae (Porifera) Christine Morrow1 and Paco Cárdenas2,3* Abstract Background: Demospongiae is the largest sponge class including 81% of all living sponges with nearly 7,000 species worldwide. Systema Porifera (2002) was the result of a large international collaboration to update the Demospongiae higher taxa classification, essentially based on morphological data. Since then, an increasing number of molecular phylogenetic studies have considerably shaken this taxonomic framework, with numerous polyphyletic groups revealed or confirmed and new clades discovered. And yet, despite a few taxonomical changes, the overall framework of the Systema Porifera classification still stands and is used as it is by the scientific community. This has led to a widening phylogeny/classification gap which creates biases and inconsistencies for the many end-users of this classification and ultimately impedes our understanding of today’s marine ecosystems and evolutionary processes. In an attempt to bridge this phylogeny/classification gap, we propose to officially revise the higher taxa Demospongiae classification. Discussion: We propose a revision of the Demospongiae higher taxa classification, essentially based on molecular data of the last ten years. We recommend the use of three subclasses: Verongimorpha, Keratosa and Heteroscleromorpha. We retain seven (Agelasida, Chondrosiida, Dendroceratida, Dictyoceratida, Haplosclerida, Poecilosclerida, Verongiida) of the 13 orders from Systema Porifera. We recommend the abandonment of five order names (Hadromerida, Halichondrida, Halisarcida, lithistids, Verticillitida) and resurrect or upgrade six order names (Axinellida, Merliida, Spongillida, Sphaerocladina, Suberitida, Tetractinellida). Finally, we create seven new orders (Bubarida, Desmacellida, Polymastiida, Scopalinida, Clionaida, Tethyida, Trachycladida). -
Importância Da Análise De Resíduos De Praguicidas Para Ações De Saúde Pública: Estudo Da Cultura Do Tomate Do Estado De Pernambuco
ADÉLIA CRISTINA PESSOA ARAÚJO IMPORTÂNCIA DA ANÁLISE DE RESÍDUOS DE PRAGUICIDAS PARA AÇÕES DE SAÚDE PÚBLICA: ESTUDO DA CULTURA DO TOMATE DO ESTADO DE PERNAMBUCO Tese apresentada à Faculdade de Saúde Públ da Universidade de São Paulo, para obtenção Grau de Doutor em Saúde Pública, com área concentração em Saúde Ambiental. Orientador: Prof. Dr. Diogo Pupo Nogueira Dr 339 São Paulo, 1998 Para Sergio, Andely, e minha querida turma miúda, Filipe, Henrique, Lívia, Bren Leonardo, Laís, Túlio, Gustavo, Érica e Natália, com o meu carinho. Ao Sergio, pelos ensinamentos e orientação ao longo da minha vida profissior apoio incondicional em todos os momentos e gratificante convivênc o meu especial agradecimento )\' AGRADECIMENTOS Às diretorias do Instituto Tecnológico do Estado de Pernambuco- ITEP, por proporcionar meios para o desenvolvimento do meu trabalho profissional e, particularmente, deste trabalho. Ao Conselho Nacional de Pesquisa e Desenvolvimento- CNPq, Fundação de Amparo à Ciência e Tecnologia de Pernambuco - FACEPE, Banco do Nordeste do Brasil- BNB e Fundação Banco do Brasil- FBB pelo apoio financeiro. Ao Professor Diogo Pupo Nogueira, pelo apoio e confiança no meu trabalho. À colega de trabalho Danuza Leal Telles, pela ajuda, amizade e companheirismo sempre presentes, e por assumir prontamente a responsabilidade por minhas atribuições funcionais nos momentos em que me afastei para realizar este trabalho. À Lia Giraldo da Silva Augusto, do CPqAM I NESC I FIOCRUZ, pelas valiosas sugestões, discussões e orientação nas questões relacionadas com a saúde do trabalhador, o que tornou possível a ampliação da proposta inicial do trabalho. À Nestlé Industrial e Comercial Ltda. I Departamento de Contaminantes e Autenticidade, nas pessoas de Oswaldo Marmo, Jalba Miniussi e Rosângela Gorni, pela carinhosa acolhida para treinamentos, orientação técnica e doações de padrões analíticos e de outros consumíveis de laboratório. -
Transcriptome Sequencing, Characterization and Overview of the Gene Expression Along Three Life Cycle Stages
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Digital.CSIC Molecular Ecology Resources (2013) doi: 10.1111/1755-0998.12085 A NGS approach to the encrusting Mediterranean sponge Crella elegans (Porifera, Demospongiae, Poecilosclerida): transcriptome sequencing, characterization and overview of the gene expression along three life cycle stages A. R. PEREZ-PORRO,*† D. NAVARRO-GOMEZ,† M. J. URIZ* and G. GIRIBET† *Center for Advanced Studies of Blanes (CEAB-CSIC), c/Acces a la Cala St. Francesc 14, Girona, Blanes 17300, Spain, †Museum of Comparative Zoology, Department of Organismic and Evolutionary Biology, Harvard University, 26 Oxford Street, Cambridge, MA 02138, USA Abstract Sponges can be dominant organisms in many marine and freshwater habitats where they play essential ecological roles. They also represent a key group to address important questions in early metazoan evolution. Recent approaches for improving knowledge on sponge biological and ecological functions as well as on animal evolution have focused on the genetic toolkits involved in ecological responses to environmental changes (biotic and abiotic), development and reproduction. These approaches are possible thanks to newly available, massive sequencing tech- nologies–such as the Illumina platform, which facilitate genome and transcriptome sequencing in a cost-effective manner. Here we present the first NGS (next-generation sequencing) approach to understanding the life cycle of an encrusting marine sponge. For this we sequenced libraries of three different life cycle stages of the Mediterranean sponge Crella elegans and generated de novo transcriptome assemblies. Three assemblies were based on sponge tissue of a particular life cycle stage, including non-reproductive tissue, tissue with sperm cysts and tissue with larvae. -
Ereskovsky Et 2018 Bulgarie.Pd
Sponge community of the western Black Sea shallow water caves: diversity and spatial distribution Alexander Ereskovsky, Oleg Kovtun, Konstantin Pronin, Apostol Apostolov, Dirk Erpenbeck, Viatcheslav Ivanenko To cite this version: Alexander Ereskovsky, Oleg Kovtun, Konstantin Pronin, Apostol Apostolov, Dirk Erpenbeck, et al.. Sponge community of the western Black Sea shallow water caves: diversity and spatial distribution. PeerJ, PeerJ, 2018, 6, pp.e4596. 10.7717/peerj.4596. hal-01789010 HAL Id: hal-01789010 https://hal.archives-ouvertes.fr/hal-01789010 Submitted on 14 May 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Sponge community of the western Black Sea shallow water caves: diversity and spatial distribution Alexander Ereskovsky1,2, Oleg A. Kovtun3, Konstantin K. Pronin4, Apostol Apostolov5, Dirk Erpenbeck6 and Viatcheslav Ivanenko7 1 Institut Méditerranéen de Biodiversité et d'Ecologie Marine et Continentale (IMBE), Aix Marseille University, CNRS, IRD, Avignon Université, Marseille, France 2 Department of Embryology, Faculty of Biology, -
The Global Invertebrate Genomics Alliance
Journal of Heredity 2014:105(1):1–18 © The American Genetic Association 2013. All rights reserved. doi:10.1093/jhered/est084 For permissions, please e-mail: [email protected] The Global Invertebrate Genomics Alliance (GIGA): Developing Community Resources to Study Downloaded from https://academic.oup.com/jhered/article-abstract/105/1/1/858593 by University of Florida, Joseph Ryan on 28 May 2019 Diverse Invertebrate Genomes GIGA COMMUNiTY OF SciENTisTs* Address correspondence to Dr. Jose V. Lopez, Oceanographic Center, Nova Southeastern University, 8000 North Ocean Drive, Dania Beach, FL 33004, or e-mail: [email protected]. *Authors are listed in the Appendix Abstract Over 95% of all metazoan (animal) species comprise the “invertebrates,” but very few genomes from these organisms have been sequenced. We have, therefore, formed a “Global Invertebrate Genomics Alliance” (GIGA). Our intent is to build a collaborative network of diverse scientists to tackle major challenges (e.g., species selection, sample collection and storage, sequence assembly, annotation, analytical tools) associated with genome/transcriptome sequencing across a large taxonomic spectrum. We aim to promote standards that will facilitate comparative approaches to invertebrate genomics and collabora- tions across the international scientific community. Candidate study taxa include species from Porifera, Ctenophora, Cnidaria, Placozoa, Mollusca, Arthropoda, Echinodermata, Annelida, Bryozoa, and Platyhelminthes, among others. GIGA will target 7000 noninsect/nonnematode species, with an emphasis on marine taxa because of the unrivaled phyletic diversity in the oceans. Priorities for selecting invertebrates for sequencing will include, but are not restricted to, their phylogenetic placement; relevance to organismal, ecological, and conservation research; and their importance to fisheries and human health. -
Recife: the Cradle of Jewish America
Pace University DigitalCommons@Pace Faculty Working Papers Lubin School of Business 6-30-2019 Recife: The Cradle of Jewish America P.V. Viswanath Follow this and additional works at: https://digitalcommons.pace.edu/lubinfaculty_workingpapers Part of the Jewish Studies Commons, and the Latin American History Commons Middle Atlantic Review of Latin American Studies, 2019 Vol. 3, No. 1, 81-91 Research Note Recife: The Cradle of Jewish America P. V. (Meylekh) Viswanath Lubin School of Business Pace University [email protected] The first New World Jewish settlement was in Recife, then a relatively small city in northeastern Brazil. Portuguese New Christians migrated there in the sixteenth century in search of a freer environment in which to continue practicing the Jewish faith. However, it was not until 1630, when the Dutch conquered the region, that Jews were able to openly observe their religion. With the Portuguese reconquest in 1654, this brief chapter ended. Ashkenazi Jews from Eastern Europe and Germany arrived at the beginning of the twentieth century and flourished for several decades. Assimilation and intermarriage, however, diminished Jewish practices and identity before a revival flourished during the last twenty-five years, which has seen both cultural and religious institutions rebuilt. Still, the long-term viability of this community, far from others in Brazil, is not guaranteed. What follows is an account of the long history of Recife Jewry. Keywords: Jews, Recife, Brazil, synagogues, Ashkenazi, Sephardim, Dutch period Introduction More than five hundred years have passed since the first Jews set foot in the New World, not in New Amsterdam, but on the northeastern coast of South America. -
Effects of Implementing Multiple Trip Generating Developments
Journal of Transport Literature, 10(2), 25-29, Apr. 2016. ISSN 2238-1031 Measuring accessibility: effects of implementing multiple trip generating developments Jessica Helena de Lima+; Maurício Oliveira de Andrade; Maria Leonor Alves Maia Universidade Federal de Pernambuco, UFPE, Recife, Brazil Article Info Abstract Keywords: The urban environment can be strongly affected by the increased number of displacements that emerge trip generating development from a trip generating development hub, and so a measuring tool is needed for these variations, indicating accessibility where they occurred with a greater intensity. This can guide the government when investing in local indicator transport. This paper proposes location quality indicators and uses them to measure the impact of the Suape's Industrial and Port new Industrial Port Complex of Suape in Pernambuco, which is considered to be trip generator territory. Complex Data from the 1997 OD survey, prior to the existence of the complex, has been used in comparison with number of displacements the 2010 Census, once the industries were in place. Clearly the complex installation brought great changes, not only to its immediate location, but also for the entire metropolis. Displacements towards this area have greatly intensified in number and average travel time. The accessibility index for the locals has Submitted 13 Apr 2015; received in revised form 7 Aug 2015; greatly improved, and their per capita income shows its greatest variation between the years 2000 and accepted 31 Aug 2015. 2010, suggesting that local workers have been absorbed by the industry, comprising an important step towards sustainable development and social inclusion. Licensed under Creative Commons CC-BY 3.0 BR. -
The World Bank
Document of The World Bank FOR OFFICIAL USE ONLY Public Disclosure Authorized Report No. 10832 PROJECT PERFORMANCE AUDIT REPORT BRAZIL THIRD URBAN TRANSPORT PROJECT Public Disclosure Authorized (LOAN 1965-BR) RECIFE METROPOLITAN REGION DEVELOPMENT PROJECT (LOAN 2170-BR) PARANA MARKET TOWNS IMPROVEMENT PROJECT (LOAN 2343-BR) NORTHEAST URBAN FLOOD RECONSTRUCTION PROJECT (LOAN 25n-BR) Public Disclosure Authorized JUNE 26, 1992 0.331 , Type - ODD13 Report 1fl 110 / 7:073 / Public Disclosure Authorized Operations Evaluation Department This document has a restricted distribution and may be used by recipients only in the performance of their official duties. Its contents may not otherwise be disclosed without World Bank authorization. ABBREVIATIONS AND ACRONYMS AGLURB Urban Agglomerations Program BANESTADO Banco do Estado do Parana BNH National Housing Bank CEF Caixa Economica Federal CNDU National Urban Development Council CNPU National Ccmmission on Urban Policy and Metropolitan Regions CORABs State Housing Ccmpanies CUC Curado Urban Center DEAIN Department of International Affairs EBTU Brazilian Urban Transport Enterprise FAMEPAR Parana State Secretariat of Planning, Parana Municipal Assistance Foundation FIDEM Recife Metropolitan Region Development Foundation IBAM Brazilian Institute of Municipal Administration ICM Goods Circulation Tax MDU Ministry of Urban Development and Environment MEFP Ministry of Economy, Finance and Planning MINTER Ministry of the Interior PLANASA National Sanitation Plan PCR Project Completion Report PRAM The Parana -
Sponge Biodiversity of the United Kingdom
Sponge Biodiversity of the United Kingdom A report from the Sponge Biodiversity of the United Kingdom project May 2008-May 2011 Claire Goodwin & Bernard Picton National Museums Northern Ireland Sponge Biodiversity of the United Kingdom Contents Page 1. Introduction 2 1.1 Project background 2 1.2 Project aims 2 1.3 Project outputs 2 2. Methods 3 2.1 Survey methodology 3 2.2 Survey locations 4 2.2.1 Firth of Lorn and Sound of Mull , Scotland 6 2.2.2 Pembrokeshire , Wales 6 2.2.3 Firth of Clyde , Scotland 6 2.2.4 Isles of Scilly , England 8 2.2.5 Sark, Channel Isles 8 2.2.6 Plymouth , England 8 2.3 Laboratory methodology 10 2.3.1 The identifi cation process 10 2.4 Data handling 11 3. Results 13 3.1 Notes on UK sponge communities 13 3.1.1 Scotland 13 3.1.2 Wales 13 3.1.3 Isles of Scilly 13 3.1.4 Sark 13 3.1.5 Sponge biogeography 15 3.2 Species of particular interest 15 4. Publications 34 4.1 Manuscripts in preparation 34 4.2 Published/accepted manuscripts 37 5. Publicity 37 5.1 Academic conference presentations 37 5.2 Public talks/events 38 5.3 Press coverage 38 6. Training Courses 39 7. Collaborations with other Organisations 42 8. Conclusions 44 8.1 Ulster Museum, National Museums Northern Ireland – a centre of excellence for sponge 44 taxonomy 8.2 Future work 44 8.2.1. Species requiring further work 45 9. Acknowledgements 46 10. -
Downloaded and Used As
bioRxiv preprint doi: https://doi.org/10.1101/2020.12.09.417808; this version posted May 18, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Families matter: Comparative genomics provides insight into the 2 function of phylogenetically diverse sponge associated bacterial 3 symbionts 4 Samantha C. Waterwortha,b, Jarmo-Charles J. Kalinski b, Luthando S. Madonselab, 5 Shirley Parker-Nanceb,c, Jason C. Kwana, Rosemary A. Dorrington* b.d 6 aDivision of Pharmaceutical Sciences, University of Wisconsin, 777 Highland Ave., Madison, 7 Wisconsin 53705, USA 8 bDepartment of Biochemistry and Microbiology, Rhodes University, Makhanda, South Africa 9 cSouth African Environmental Observation Network, Elwandle Coastal Node, Port Elizabeth, 10 South Africa 11 dSouth African Institute for Aquatic Biodiversity, Makhanda, South Africa 12 *Correspondence: 13 Rosemary A. Dorrington 14 [email protected] 15 16 Running title: Genomics of sponge-associated bacterial symbionts 17 18 Competing Interests 19 The authors declare no competing interests, financial or otherwise, in relation to the work 20 described here. 21 22 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.12.09.417808; this version posted May 18, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 23 Abstract 24 Background. Marine sponges play an important role in maintaining marine ecosystem health. 25 As the oldest extant metazoans, sponges have been forming symbiotic relationships with 26 microbes that may date back as far as 700 million years. -
Transcriptome Sequencing, Characterization and Overview of the Gene Expression Along Three Life Cycle Stages
Molecular Ecology Resources (2013) doi: 10.1111/1755-0998.12085 A NGS approach to the encrusting Mediterranean sponge Crella elegans (Porifera, Demospongiae, Poecilosclerida): transcriptome sequencing, characterization and overview of the gene expression along three life cycle stages A. R. PEREZ-PORRO,*† D. NAVARRO-GOMEZ,† M. J. URIZ* and G. GIRIBET† *Center for Advanced Studies of Blanes (CEAB-CSIC), c/Acces a la Cala St. Francesc 14, Girona, Blanes 17300, Spain, †Museum of Comparative Zoology, Department of Organismic and Evolutionary Biology, Harvard University, 26 Oxford Street, Cambridge, MA 02138, USA Abstract Sponges can be dominant organisms in many marine and freshwater habitats where they play essential ecological roles. They also represent a key group to address important questions in early metazoan evolution. Recent approaches for improving knowledge on sponge biological and ecological functions as well as on animal evolution have focused on the genetic toolkits involved in ecological responses to environmental changes (biotic and abiotic), development and reproduction. These approaches are possible thanks to newly available, massive sequencing tech- nologies–such as the Illumina platform, which facilitate genome and transcriptome sequencing in a cost-effective manner. Here we present the first NGS (next-generation sequencing) approach to understanding the life cycle of an encrusting marine sponge. For this we sequenced libraries of three different life cycle stages of the Mediterranean sponge Crella elegans and generated de novo transcriptome assemblies. Three assemblies were based on sponge tissue of a particular life cycle stage, including non-reproductive tissue, tissue with sperm cysts and tissue with larvae. The fourth assembly pooled the data from all three stages.