Deterrent Activities in the Crude Lipophilic Fractions
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
The Green Fluorescent Protein
P1: rpk/plb P2: rpk April 30, 1998 11:6 Annual Reviews AR057-17 Annu. Rev. Biochem. 1998. 67:509–44 Copyright c 1998 by Annual Reviews. All rights reserved THE GREEN FLUORESCENT PROTEIN Roger Y. Tsien Howard Hughes Medical Institute; University of California, San Diego; La Jolla, CA 92093-0647 KEY WORDS: Aequorea, mutants, chromophore, bioluminescence, GFP ABSTRACT In just three years, the green fluorescent protein (GFP) from the jellyfish Aequorea victoria has vaulted from obscurity to become one of the most widely studied and exploited proteins in biochemistry and cell biology. Its amazing ability to generate a highly visible, efficiently emitting internal fluorophore is both intrin- sically fascinating and tremendously valuable. High-resolution crystal structures of GFP offer unprecedented opportunities to understand and manipulate the rela- tion between protein structure and spectroscopic function. GFP has become well established as a marker of gene expression and protein targeting in intact cells and organisms. Mutagenesis and engineering of GFP into chimeric proteins are opening new vistas in physiological indicators, biosensors, and photochemical memories. CONTENTS NATURAL AND SCIENTIFIC HISTORY OF GFP .................................510 Discovery and Major Milestones .............................................510 Occurrence, Relation to Bioluminescence, and Comparison with Other Fluorescent Proteins .....................................511 PRIMARY, SECONDARY, TERTIARY, AND QUATERNARY STRUCTURE ...........512 Primary Sequence from -
Information Review for Protected Deep-Sea Coral Species in the New Zealand Region
INFORMATION REVIEW FOR PROTECTED DEEP-SEA CORAL SPECIES IN THE NEW ZEALAND REGION NIWA Client Report: WLG2006-85 November 2006 NIWA Project: DOC06307 INFORMATION REVIEW FOR PROTECTED DEEP-SEA CORAL SPECIES IN THE NEW ZEALAND REGION Authors Mireille Consalvey Kevin MacKay Di Tracey Prepared for Department of Conservation NIWA Client Report: WLG2006-85 November 2006 NIWA Project: DOC06307 National Institute of Water & Atmospheric Research Ltd 301 Evans Bay Parade, Greta Point, Wellington Private Bag 14901, Kilbirnie, Wellington, New Zealand Phone +64-4-386 0300, Fax +64-4-386 0574 www.niwa.co.nz © All rights reserved. This publication may not be reproduced or copied in any form without the permission of the client. Such permission is to be given only in accordance with the terms of the client's contract with NIWA. This copyright extends to all forms of copying and any storage of material in any kind of information retrieval system. Contents Executive Summary iv 1. Introduction 1 2. Corals 1 3. Habitat 3 4. Corals as a habitat 3 5. Major taxonomic groups of deep-sea corals in New Zealand 5 6. Distribution of deep-sea corals in the New Zealand region 9 7. Systematics of deep-sea corals in New Zealand 18 8. Reproduction and recruitment of deep-sea corals 20 9. Growth rates and deep-sea coral ageing 22 10. Fishing effects on deep-sea corals 24 11. Other threats to deep-sea corals 29 12. Ongoing research into deep-sea corals in New Zealand 29 13. Future science and challenges to deep-sea coral research in New Zealand 30 14. -
Predator and Scavenger Aggregation to Discarded By-Catch from Dredge Fisheries: Importance of Damage Level
Journal of Sea Research 51 (2004) 69–76 www.elsevier.com/locate/seares Short Communication Predator and scavenger aggregation to discarded by-catch from dredge fisheries: importance of damage level S.R. Jenkinsa,b,*, C. Mullena, A.R. Branda a Port Erin Marine Laboratory (University of Liverpool), Port Erin, Isle of Man, British Isles, IM9 6JA, UK b Marine Biological Association, Citadel Hill, Plymouth, PL1 2PB, UK Received 23 October 2002; accepted 22 May 2003 Abstract Predator and scavenger aggregation to simulated discards from a scallop dredge fishery was investigated in the north Irish Sea using an in situ underwater video to determine differences in the response to varying levels of discard damage. The rate and magnitude of scavenger and predator aggregation was assessed using three different types of bait, undamaged, lightly damaged and highly damaged individuals of the great scallop Pecten maximus. In each treatment scallops were agitated for 40 minutes in seawater to simulate the dredging process, then subjected to the appropriate damage level before being tethered loosely in front of the video camera. The density of predators and scavengers at undamaged scallops was low and equivalent to recorded periods with no bait. Aggregation of a range of predators and scavengers occurred at damaged bait. During the 24 hour period following baiting there was a trend of increasing magnitude of predator abundance with increasing damage level. However, badly damaged scallops were eaten quickly and lightly damaged scallops attracted a higher overall magnitude of predator abundance over a longer 4 day period. Large scale temporal variability in predator aggregation to simulated discarded biota was examined by comparison of results with those of a previous study, at the same site, 4 years previously. -
Polymetallic Nodules Are Essential for Food-Web Integrity of a Prospective Deep-Seabed Mining Area in Pacific Abyssal Plains
www.nature.com/scientificreports OPEN Polymetallic nodules are essential for food‑web integrity of a prospective deep‑seabed mining area in Pacifc abyssal plains Tanja Stratmann1,2,3*, Karline Soetaert1, Daniel Kersken4,5 & Dick van Oevelen1 Polymetallic nodule felds provide hard substrate for sessile organisms on the abyssal seafoor between 3000 and 6000 m water depth. Deep‑seabed mining targets these mineral‑rich nodules and will likely modify the consumer‑resource (trophic) and substrate‑providing (non‑trophic) interactions within the abyssal food web. However, the importance of nodules and their associated sessile fauna in supporting food‑web integrity remains unclear. Here, we use seafoor imagery and published literature to develop highly‑resolved trophic and non‑trophic interaction webs for the Clarion‑Clipperton Fracture Zone (CCZ, central Pacifc Ocean) and the Peru Basin (PB, South‑East Pacifc Ocean) and to assess how nodule removal may modify these networks. The CCZ interaction web included 1028 compartments connected with 59,793 links and the PB interaction web consisted of 342 compartments and 8044 links. We show that knock‑down efects of nodule removal resulted in a 17.9% (CCZ) to 20.8% (PB) loss of all taxa and 22.8% (PB) to 30.6% (CCZ) loss of network links. Subsequent analysis identifed stalked glass sponges living attached to the nodules as key structural species that supported a high diversity of associated fauna. We conclude that polymetallic nodules are critical for food‑web integrity and that their absence will likely result in reduced local benthic biodiversity. Abyssal plains, the deep seafoor between 3000 and 6000 m water depth, have been relatively untouched by anthropogenic impacts due to their extreme depths and distance from continents 1. -
Guided Inquiry 2
CB 12 Trophic Scavenger Hunt Where does food energy come from? What happens to energy as it is utilized by organisms? In a simple food chain, corn, a photosynthetic plant, would be called a producer because it receives its energy from the sun. A mouse would occupy a second level, as a primary consumer or herbivore. What could you call the level of a snake, which eats the mouse? Or an owl which feeds on the snake? The snake and owl are called secondary consumers or carnivores. How much of the solar energy captured by a plant is actually available to a herbivore? If the herbivore is eaten by a snake, how much of the original energy is available for use by the snake? Food levels represent the amount of energy available for the ecosystem. These are usually referred to as trophic levels. You can estimate the total energy in a given trophic level by the number of organisms that occupy that level. In this activity, you will participate in a scavenger hunt to find the producers and consumers in your ecosystem. You will observe how the producers and consumers interact, and then document everything you observe. What do you expect will happen to the energy available at each level in a food chain? Materials • watch with a second hand • 10 m2 sample area outside classroom; an area that is as natural as possible • field guides to identify names of organisms • colored construction paper and graph paper • scissors and tape • Casio fx2 Graphing Calculator • Casio QV2800 Digital Camera Procedure 1. -
Rules and Missions Do Nothing
RULES AND MISSIONS DO NOTHING ..................................................................................... 24 MACHINE ACTIONS .......................................................................... 25 › PEACEKEEPER BOT ACTIONS .........................................................................25 CHAPTERS › FALCHION SENTRY GUN ACTIONS ................................................................25 01 › SWAPPING BOTS AND SENTRY GUNS .........................................................25 02 GAME COMPONENTS ................................................3 10 XENOS' PHASE .........................................................26 STEP 1 - ACTIVATION ...................................................................... 26 03 INVADER PROTOCOL ................................................5 › ATTACK ................................................................................................................26 › ZOMBICIDE TROUGH SPACE AND TIME .......................................................... 6 › MOVE ....................................................................................................................26 04 SETUP ..........................................................................7 › PLAYING HUNTERS ...........................................................................................28 STEP 2 - SPAWN .............................................................................. 28 05 GAME OVERVIEW .................................................... 10 › COLORED SPAWN ZONES ................................................................................28 -
© Erin Kathryn 2017 Thank You for Downloading My Product! My Goal in Creating All of My Products Is to Share What I Have Loved Using in My Own Classroom
© Erin Kathryn 2017 Thank you for downloading my product! My goal in creating all of my products is to share what I have loved using in my own classroom. I hope you love it as well! If so, please follow me on Let’s Connect! TeachersPayTeachers and/or leave feedback for future purchase credit! Feel free to contact me @ [email protected] . Erin Kathryn www.jerseygirlgonesouth.com Name: _______________________ Date: ____________ Food Chain and Food Web Internet Scavenger Hunt Directions: Click on the link below to answer the following questions. http://www.ducksters.com/science/ecosystems/food_chain_and_web.php 1. Every living plant and animal must have _____________ to survive. Plants rely on the soil, _________________, and the _________________ for energy. 2. Animals rely on plants as well as _________________ ________________ for energy. 3. In an ______________________, plants and animals all rely on each other to ____________________. Scientists sometimes describe this dependence using a _______________ ______________ or a food web. Food Chain 4. A food chain describes how different ______________________ eat each other, starting out with a ___________________ and ending with an _______________________. For example, you could write the food chain for a lion like this: _______________--Zebra--Lion The lion eats the zebra, which eats the grass. © Erin Kathryn 2017 5. Here is another example in picture form: The grasshopper eats _____________________, the frog eats the grasshopper, the snake eats the _________________, and the eagle eats the __________________. Links of the Chain 6. There are names to help describe each link of the ______________ ____________________. The names depend mostly on what the organism ___________________ and how it contributes to the energy of the _____________________. -
Bioluminescence and Fluorescence of Three Sea Pens in the North-West
bioRxiv preprint doi: https://doi.org/10.1101/2020.12.08.416396; this version posted December 9, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Bioluminescence and fluorescence of three sea pens in the north-west Mediterranean sea Warren R Francis* 1, Ana¨ısSire de Vilar 1 1: Dept of Biology, University of Southern Denmark, Odense, Denmark Corresponding author: [email protected] Abstract Bioluminescence of Mediterranean sea pens has been known for a long time, but basic parameters such as the emission spectra are unknown. Here we examined bioluminescence in three species of Pennatulacea, Pennatula rubra, Pteroeides griseum, and Veretillum cynomorium. Following dark adaptation, all three species could easily be stimulated to produce green light. All species were also fluorescent, with bioluminescence being produced at the same sites as the fluorescence. The shape of the fluorescence spectra indicates the presence of a GFP closely associated with light production, as seen in Renilla. Our videos show that light proceeds as waves along the colony from the point of stimulation for all three species, as observed in many other octocorals. Features of their bioluminescence are strongly suggestive of a \burglar alarm" function. Introduction Bioluminescence is the production of light by living organisms, and is extremely common in the marine environment [Haddock et al., 2010, Martini et al., 2019]. Within the phylum Cnidaria, biolumiescence is widely observed among the Medusazoa (true jellyfish and kin), but also among the Octocorallia, and especially the Pennatulacea (sea pens). -
Marine Ecology Progress Series 371:297
Vol. 371: 297–300, 2008 MARINE ECOLOGY PROGRESS SERIES Published November 19 doi: 10.3354/meps07710 Mar Ecol Prog Ser NOTE Intraspecific agonistic arm-fencing behavior in the Antarctic keystone sea star Odontaster validus influences prey acquisition James B. McClintock1,*, Robert A. Angus1, Christina P. Ho1, Charles D. Amsler1, Bill J. Baker2 1Department of Biology, University of Alabama at Birmingham, Birmingham, Alabama 35294, USA 2Department of Chemistry, University of South Florida, Tampa, Florida 33620, USA ABSTRACT: The importance of intraspecific social behaviors in mediating foraging behaviors of marine invertebrate keystone predators has received little attention. In laboratory investigations employing time-lapse video, we observed that the keystone Antarctic sea star Odontaster validus dis- plays frequent agonistic arm-fencing bouts with conspecifics when near prey (injured sea urchin). Arm-fencing bouts consisted of 2 individuals elevating the distal portion of an arm until positioned arm tip to arm tip. This was followed by intermittent or continuous arm to arm contact, carried out in attempts to place an arm onto the aboral (upper) surface of the opponent. Fifteen (79%) of the 19 bouts observed occurred near prey (mean ± 1 SE, 13 ± 1.6 cm distance to prey; n = 13). These bouts lasted 21.05 ± 2.53 min (n = 15). In all 5 bouts that involved a large individual (radius, R: distance from the tip of an arm to the center of the oral disk; 45 to 53 mm) competing with either a medium (R = 35 to 42 mm) or small (R = 25 to 32 mm) individual, the large sea star prevailed. The only exception occurred in 2 instances where a medium-sized sea star had settled onto prey and was subsequently challenged by a larger individual. -
The Diet and Predator-Prey Relationships of the Sea Star Pycnopodia Helianthoides (Brandt) from a Central California Kelp Forest
THE DIET AND PREDATOR-PREY RELATIONSHIPS OF THE SEA STAR PYCNOPODIA HELIANTHOIDES (BRANDT) FROM A CENTRAL CALIFORNIA KELP FOREST A Thesis Presented to The Faculty of Moss Landing Marine Laboratories San Jose State University In Partial Fulfillment of the Requirements for the Degree Master of Arts by Timothy John Herrlinger December 1983 TABLE OF CONTENTS Acknowledgments iv Abstract vi List of Tables viii List of Figures ix INTRODUCTION 1 MATERIALS AND METHODS Site Description 4 Diet 5 Prey Densities and Defensive Responses 8 Prey-Size Selection 9 Prey Handling Times 9 Prey Adhesion 9 Tethering of Calliostoma ligatum 10 Microhabitat Distribution of Prey 12 OBSERVATIONS AND RESULTS Diet 14 Prey Densities 16 Prey Defensive Responses 17 Prey-Size Selection 18 Prey Handling Times 18 Prey Adhesion 19 Tethering of Calliostoma ligatum 19 Microhabitat Distribution of Prey 20 DISCUSSION Diet 21 Prey Densities 24 Prey Defensive Responses 25 Prey-Size Selection 27 Prey Handling Times 27 Prey Adhesion 28 Tethering of Calliostoma ligatum and Prey Refugia 29 Microhabitat Distribution of Prey 32 Chemoreception vs. a Chemotactile Response 36 Foraging Strategy 38 LITERATURE CITED 41 TABLES 48 FIGURES 56 iii ACKNOWLEDGMENTS My span at Moss Landing Marine Laboratories has been a wonderful experience. So many people have contributed in one way or another to the outcome. My diving buddies perse- vered through a lot and I cherish our camaraderie: Todd Anderson, Joel Thompson, Allan Fukuyama, Val Breda, John Heine, Mike Denega, Bruce Welden, Becky Herrlinger, Al Solonsky, Ellen Faurot, Gilbert Van Dykhuizen, Ralph Larson, Guy Hoelzer, Mickey Singer, and Jerry Kashiwada. Kevin Lohman and Richard Reaves spent many hours repairing com puter programs for me. -
Marine Ecology Progress Series 385:77
Vol. 385: 77–85, 2009 MARINE ECOLOGY PROGRESS SERIES Published June 18 doi: 10.3354/meps08026 Mar Ecol Prog Ser OPENPEN ACCESSCCESS Palatability and chemical defenses of sponges from the western Antarctic Peninsula Kevin J. Peters1,*, Charles D. Amsler1, James B. McClintock1, Rob W. M. van Soest2, Bill J. Baker3 1Department of Biology, University of Alabama at Birmingham, 1300 University Blvd., Birmingham, Alabama 35294-1170, USA 2Zoological Museum of the University of Amsterdam, PO Box 94766, 1090 GT Amsterdam, The Netherlands 3Department of Chemistry, University of South Florida, 4202 East Fowler Ave., Tampa, Florida 33620-5240, USA ABSTRACT: The present study surveyed the palatability of all sponge species that could be collected in sufficient quantities in a shallow-water area along the western Antarctic Peninsula. Of 27 species assayed, 78% had outermost tissues that were significantly unpalatable to the sympatric, omnivorous sea star Odontaster validus. Of those species with unpalatable outer tissues, 62% had inner tissues that were also unpalatable to the sea stars. Sea stars have often been considered as the primary predators of sponges in other regions of Antarctica, and their extra-oral mode of feeding threatens only the outermost sponge tissues. The observation that many of the sponges allocate defenses to inner tissues suggests the possibility that biting predators such as mesograzers, which could access inner sponge layers, may also be important in communities along the Antarctic Peninsula. In feeding bioassays with extracts from 12 of the unpalatable species in artificial foods, either lipophilic or hydrophilic extracts were deterrent in each species. These data indicate an overall level of chemical defenses in these Antarctic sponges that is comparable to, and slightly greater than, that found in a previous survey of tropical species. -
The Sandy Beach Environment
THE SANDY BEACH ENVIRONMENT The sandy beach is a region of shifting sands and crashing waves. Each time a wave pummels the shore, sediment is suspended and scattered in every direction. Together the wind and waves constantly rework and reshape the face of the beach. Throughout the year, the beach slope is continually changing. During the spring and summer, gentle constructive waves deposit sediment on the beach platform, building up the slope. The large destructive waves of fall and winter strip the sand from the beach, often leaving only cobblestones and the rocky beach platform. This unstable environment makes it difficult for plants and animals to settle. In addition to waves, the organisms must contend with the problems imposed by tidal fluctuations. The daily ebb and flow of the sea exposes the shore to all the elements. The animals living within the range of the high and low tides (intertidal) are subjected to extreme temperature changes, drying out, and other problems resulting from exposure to the air. Very few animals can survive these rigorous conditions, and no large plants can anchor in the shifting sands. To the casual observer, the sandy beach appears desolate and barren. However, within the sand grains live large numbers of diverse animals. To survive in this environment, these animals have evolved some interesting adaptations. Successful species either ride the waves, live just above the tideline, or burrow beneath the sand to protect themselves from the hammering waves. The upper beach -is full of small scavengers and beachhoppers. These animals live just above the breaking waves.