Metabolic Hallmarks of Hepatic Stellate Cells in Liver Fibrosis

Total Page:16

File Type:pdf, Size:1020Kb

Metabolic Hallmarks of Hepatic Stellate Cells in Liver Fibrosis cells Review Metabolic Hallmarks of Hepatic Stellate Cells in Liver Fibrosis Olga Khomich 1,2, Alexander V. Ivanov 2,* and Birke Bartosch 1,* 1 INSERM, U1052, Cancer Research Center of Lyon (CRCL), Université de Lyon (UCBL1), CNRS UMR_5286, Centre Léon Bérard, CEDEX 03, 69424 Lyon, France; [email protected] 2 Center for Precision Genome Editing and Genetic Technologies for Biomedicine, Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, 119991 Moscow, Russia * Correspondence: [email protected] (A.V.I.); [email protected] (B.B.); Tel.: +74-991-356-065 (A.V.I.); +33-472-681-975 (B.B.) Received: 28 October 2019; Accepted: 18 December 2019; Published: 20 December 2019 Abstract: Liver fibrosis is a regenerative process that occurs after injury. It is characterized by the deposition of connective tissue by specialized fibroblasts and concomitant proliferative responses. Chronic damage that stimulates fibrogenic processes in the long-term may result in the deposition of excess matrix tissue and impairment of liver functions. End-stage fibrosis is referred to as cirrhosis and predisposes strongly to the loss of liver functions (decompensation) and hepatocellular carcinoma. Liver fibrosis is a pathology common to a number of different chronic liver diseases, including alcoholic liver disease, non-alcoholic fatty liver disease, and viral hepatitis. The predominant cell type responsible for fibrogenesis is hepatic stellate cells (HSCs). In response to inflammatory stimuli or hepatocyte death, HSCs undergo trans-differentiation to myofibroblast-like cells. Recent evidence shows that metabolic alterations in HSCs are important for the trans-differentiation process and thus offer new possibilities for therapeutic interventions. The aim of this review is to summarize current knowledge of the metabolic changes that occur during HSC activation with a particular focus on the retinol and lipid metabolism, the central carbon metabolism, and associated redox or stress-related signaling pathways. Keywords: liver fibrosis; hepatic stellate cell; trans-differentiation; metabolism 1. Introduction to Liver Fibrosis Decompensation and hepatocellular carcinoma (HCC) due to liver cirrhosis are causing two million deaths every year, and account for more than 3.5% of all deaths worldwide [1]. HCC is the most common liver cancer and the second leading cause of all deaths related to cancer [2]. While the number of patients with liver disease has been steadily increasing over the last few years, treatment options for early, as well as late-stage liver fibrosis, remain limited. The most prevalent forms of fibrotic liver disease are alcoholic liver disease (ALD), non-alcoholic fatty liver disease, which frequently develops into non-alcoholic steatohepatitis (NASH) [3], and viral hepatitis. In all these cases, it is the chronic nature of the liver injury that drives fibrosis development. Fibrosis is a regenerative process that alters the homeostasis of the extracellular matrix (ECM) and leads on the long-term to excessive accumulation of connective tissue in the liver. Fibrosis is accompanied by immune infiltrations and altered angiogenesis. Together, these processes alter the architecture of the liver, reduce liver elasticity, and ultimately deteriorate organ structure and function [4]. Late-stage fibrosis, also termed cirrhosis, is characterized by the formation of nodules, where healthy liver tissue is ‘encapsulated’ by connective tissue. This results in liver stiffness and perturbation of blood flow with portal hypertension, and an increased risk of overall mortality and mortality due to liver decompensation or HCC. Cells 2020, 9, 24; doi:10.3390/cells9010024 www.mdpi.com/journal/cells Cells 2019, 8, x 2 of 22 with portal hypertension, and an increased risk of overall mortality and mortality due to liver decompensation or HCC. Most of the progress that has been made in the identification of the molecular mechanisms underlying fibrosis is based on the use of in vitro model systems using tissue culture‐adapted HSC Cellslines,2020 primary, 9, 24 HSC preparations, and a number of in vivo models such as animals being fed 2high of 22‐ fat/cholesterol or choline‐deficient diets, animals that undergo bile duct ligation, treatment with ethanol,Most CCl of4 the or other progress chemical that hasagents, been or made transgenic in the animals identification [5]. of the molecular mechanisms underlying fibrosis is based on the use of in vitro model systems using tissue culture-adapted 2. Hepatic Stellate Cells HSC lines, primary HSC preparations, and a number of in vivo models such as animals being fed high-fatThe/cholesterol cell type orthat choline-deficient is predominantly diets, responsible animals that for undergo fibrotic bileprocesses duct ligation, is hepatic treatment stellate with cells ethanol,(HSCs), CCla mesenchymal4 or other chemical cell population agents, or that transgenic constitutes animals 5%–10% [5]. of the total number of cells in the liver (Figure 1). HSCs are located in the perisinusoidal space (space of Disse) and are surrounded by 2.hepatocytes Hepatic Stellate and sinusoidal Cells endothelial cells [6,7]. Their main functions are the secretion of laminin, proteoglycans,The cell type and that type is predominantly IV collagen to responsible form basement for fibrotic membrane processes‐like is structures. hepatic stellate Quiescent cells (HSCs), HSCs astart mesenchymal to proliferate cell populationand undergo that trans constitutes‐differentiation 5–10% of into the totalcontractile number myofibroblasts of cells in the liver in response (Figure1 ).to HSCsparacrine are located stimulation in the perisinusoidalby neighboring space cell (spacetypes, of including Disse) and Kupffer are surrounded cells, hepatocytes, by hepatocytes platelets, and sinusoidalleukocytes, endothelial and sinusoidal cells endothelial [6,7]. Their cells. main Kupffer functions cells are can the stimulate secretion activation of laminin, and proteoglycans, proliferation andof HSCs type IVthrough collagen the to actions form basement of cytokines, membrane-like and in particular structures. transforming Quiescent growth HSCs startfactor to β proliferate1 (TGFβ1), andinterleukin undergo 1 trans-di (IL‐1), tumorfferentiation necrosis into factor contractile (TNF), myofibroblasts reactive oxygen in species response (ROS) to paracrine and lipid stimulation peroxides by[6,8]. neighboring Hepatocytes cell are types, an important including source Kupffer of cells, inflammatory hepatocytes, lipid platelets, peroxides leukocytes, in liver diseases. and sinusoidal Platelets endothelialrelease pro cells.‐fibrogenic Kupff ergrowth cells can factors stimulate such activationas platelet and‐derived proliferation growth of factor HSCs (PDGF), through TGF the actionsβ1, and ofepidermal cytokines, growth and in particularfactor (EGF). transforming Neutrophils growth are factoran importantβ1 (TGF βsource1), interleukin of ROS 1 as (IL-1), well tumor [6,8]. necrosisLymphocytes factor (TNF),represent reactive a further oxygen potential species source (ROS) of and pro lipid‐fibrogenic peroxides cytokines. [6,8]. Hepatocytes Finally, HSCs are anare importantresponsive source to locally of inflammatory produced or lipidsystemic peroxides levels inof livervaso‐ diseases.constricting Platelets peptides release and pro-fibrogenicfactors such as growthendothelin factors‐1 and such angiotensin as platelet-derived‐II. Endothelin growth‐1 factor is produced (PDGF), TGFprimarilyβ1, and by epidermal the liver growthendothelium. factor (EGF).Angiotensin Neutrophils‐II is secreted are an important by the liver source and of matured ROS as wellinto [6a, 8functional]. Lymphocytes peptide represent by a number a further of potentialproteolytic source cleavages of pro-fibrogenic and nitric oxide cytokines. to regulate Finally, the diameter HSCs are of responsive the sinusoidal to locally lumen produced and thus the or systemiclocal microcirculation. levels of vaso-constricting peptides and factors such as endothelin-1 and angiotensin-II. Endothelin-1Upon stimulation, is produced one primarily major activity by the liver of myofibroblasts endothelium. Angiotensin-IIis to produce collagen is secreted fibers. by the Besides liver andHSCs, matured liver progenitor into a functional cells and peptide portal by fibroblasts a number ofcan proteolytic also convert cleavages into myofibroblasts and nitric oxide in response to regulate to thepro diameter‐fibrogenic of thestimuli sinusoidal and contribute lumen and to collagen thus the secretion. local microcirculation. Figure 1. The space of Disse. Quiescent stellate cells located in the space of Disse undergo activation in Figure 1. The space of Disse. Quiescent stellate cells located in the space of Disse undergo activation response to a number of different stimuli, such as growth factors, cytokines or debris, and molecules in response to a number of different stimuli, such as growth factors, cytokines or debris, and derived from apoptotic hepatocytes. See text for details. molecules derived from apoptotic hepatocytes. See text for details. Upon stimulation, one major activity of myofibroblasts is to produce collagen fibers. Besides HSCs, liver progenitor cells and portal fibroblasts can also convert into myofibroblasts in response to pro-fibrogenic stimuli and contribute to collagen secretion. Quiescent HSCs store retinoids (vitamin A) in lipid droplets in the cytoplasm [8]. Retinoid derivatives play an important role in tissue homeostasis and are implicated in proliferation,
Recommended publications
  • Accumulation of PNPLA3 on Lipid Droplets Is the Basis of Associated Hepatic Steatosis
    Accumulation of PNPLA3 on lipid droplets is the basis of associated hepatic steatosis Soumik BasuRaya, Yang Wanga, Eriks Smagrisa, Jonathan C. Cohenb,1, and Helen H. Hobbsa,b,c,1 aDepartment of Molecular Genetics, University of Texas Southwestern Medical Center, Dallas, TX 75390; bDepartment of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, TX 75390; and cHoward Hughes Medical Institute, University of Texas Southwestern Medical Center, Dallas, TX 75390 Contributed by Helen H. Hobbs, March 19, 2019 (sent for review February 4, 2019; reviewed by Edward A. Fisher and Rudi Zechner) Fatty liver disease (FLD) is a disorder in which accumulation of causes steatosis whereas overexpression of the wild-type (WT) triglycerides (TGs) in the liver can lead to inflammation, fibrosis, and protein does not (15). In KI mice that express PNPLA3(148M) cirrhosis. Previously, we identified a variant (I148M) in patatin-like or PNPLA3(47A), the levels of PNPLA3 on hepatic lipid drop- phospholipase domain-containing protein 3 (PNPLA3) that is strongly lets (LDs) are ∼40-fold higher than those in WT mice, despite associated with FLD, but the mechanistic basis for the association similar levels of PNPLA3 mRNA in the two lines (16). A similar remains elusive. Although PNPLA3 has TG hydrolase activity in vitro, accumulation of PNPLA3 protein was observed in transgenic inactivation or overexpression of the WT protein in mice does not mice expressing human PNPLA3(148M) compared with mice cause steatosis. In contrast, expression of two catalytically defective expressing the WT transgene (15). The massive increase in forms of PNPLA3 (I148M or S47A) in sucrose-fed mice causes accumu- PNPLA3(148M and 47A) levels appears to be due to decreased lation of both PNPLA3 and TGs on hepatic lipid droplets (LDs).
    [Show full text]
  • The Metabolic Serine Hydrolases and Their Functions in Mammalian Physiology and Disease Jonathan Z
    REVIEW pubs.acs.org/CR The Metabolic Serine Hydrolases and Their Functions in Mammalian Physiology and Disease Jonathan Z. Long* and Benjamin F. Cravatt* The Skaggs Institute for Chemical Biology and Department of Chemical Physiology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California 92037, United States CONTENTS 2.4. Other Phospholipases 6034 1. Introduction 6023 2.4.1. LIPG (Endothelial Lipase) 6034 2. Small-Molecule Hydrolases 6023 2.4.2. PLA1A (Phosphatidylserine-Specific 2.1. Intracellular Neutral Lipases 6023 PLA1) 6035 2.1.1. LIPE (Hormone-Sensitive Lipase) 6024 2.4.3. LIPH and LIPI (Phosphatidic Acid-Specific 2.1.2. PNPLA2 (Adipose Triglyceride Lipase) 6024 PLA1R and β) 6035 2.1.3. MGLL (Monoacylglycerol Lipase) 6025 2.4.4. PLB1 (Phospholipase B) 6035 2.1.4. DAGLA and DAGLB (Diacylglycerol Lipase 2.4.5. DDHD1 and DDHD2 (DDHD Domain R and β) 6026 Containing 1 and 2) 6035 2.1.5. CES3 (Carboxylesterase 3) 6026 2.4.6. ABHD4 (Alpha/Beta Hydrolase Domain 2.1.6. AADACL1 (Arylacetamide Deacetylase-like 1) 6026 Containing 4) 6036 2.1.7. ABHD6 (Alpha/Beta Hydrolase Domain 2.5. Small-Molecule Amidases 6036 Containing 6) 6027 2.5.1. FAAH and FAAH2 (Fatty Acid Amide 2.1.8. ABHD12 (Alpha/Beta Hydrolase Domain Hydrolase and FAAH2) 6036 Containing 12) 6027 2.5.2. AFMID (Arylformamidase) 6037 2.2. Extracellular Neutral Lipases 6027 2.6. Acyl-CoA Hydrolases 6037 2.2.1. PNLIP (Pancreatic Lipase) 6028 2.6.1. FASN (Fatty Acid Synthase) 6037 2.2.2. PNLIPRP1 and PNLIPR2 (Pancreatic 2.6.2.
    [Show full text]
  • 2014 ADA Posters 1319-2206.Indd
    INTEGRATED PHYSIOLOGY—INSULINCATEGORY SECRETION IN VIVO 1738-P increase in tumor size and pulmonary metastasis is observed, compared Sustained Action of Ceramide on Insulin Signaling in Muscle Cells: to wild type mice. In this study, we aimed to determine the mechanisms Implication of the Double-Stranded RNA Activated Protein Kinase through which hyperinsulinemia and the canonical IR signaling pathway drive RIMA HAGE HASSAN, ISABELLE HAINAULT, AGNIESZKA BLACHNIO-ZABIELSKA, tumor growth and metastasis. 100,000 MVT-1 (c-myc/vegf overexpressing) RANA MAHFOUZ, OLIVIER BOURRON, PASCAL FERRÉ, FABIENNE FOUFELLE, ERIC cells were injected orthotopically into 8-10 week old MKR mice. MKR mice HAJDUCH, Paris, France, Białystok, Poland developed signifi cantly larger MVT-1 (353.29±44mm3) tumor volumes than Intramyocellular accumulation of fatty acid derivatives like ceramide plays control mice (183.21±47mm3), p<0.05 with more numerous pulmonary a crucial role in altering the insulin message. If short-term action of ceramide metastases. Western blot and immunofl uorescent staining of primary tumors inhibits the protein kinase B (PKB/Akt), long-term action of ceramide on insulin showed an increase in vimentin, an intermediate fi lament, typically expressed signaling is less documented. Short-term treatment of either the C2C12 cell in cells of mesenchymal origin, and c-myc, a known transcription factor. Both line or human myotubes with palmitate (ceramide precursor, 16h) or directly vimentin and c-myc are associated with cancer metastasis. To assess if insulin with ceramide (2h) induces a loss of the insulin signal through the inhibition and IR signaling directly affects the expression these markers, in vitro studies of PKB/Akt.
    [Show full text]
  • A Study of Blood Fatty Acids Profile in Hyperlipidemic and Normolipidemic
    H OH metabolites OH Article A Study of Blood Fatty Acids Profile in Hyperlipidemic and Normolipidemic Subjects in Association with Common PNPLA3 and ABCB1 Polymorphisms Thomai Mouskeftara 1,2, Antonis Goulas 3, Despoina Ioannidou 3, Charikleia Ntenti 3, Dimitris Agapakis 4, Andreana Assimopoulou 5,6 and Helen Gika 1,2,* 1 Laboratory of Forensic Medicine and Toxicology, School of Medicine, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; [email protected] 2 Biomic AUTh, Center for Interdisciplinary Research and Innovation (CIRI-AUTH), 57001 Thessaloniki, Greece 3 Laboratory of Pharmacology, School of Medicine, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; [email protected] (A.G.); [email protected] (D.I.); [email protected] (C.N.) 4 Department of Internal Medicine, AHEPA Hospital, School of Medicine, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; [email protected] 5 Natural Products Research Center of Excellence (NatPro-AUTH), Center for Interdisciplinary Research and Innovation (CIRI-AUTH), 57001 Thessaloniki, Greece; [email protected] 6 Laboratory of Organic Chemistry, School of Chemical Engineering, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece * Correspondence: [email protected] Abstract: Adiponutrin (patatin-like phospholipase domain-containing 3; PNPLA3), encoded in humans by the PNPLA3 gene, is a protein associated with lipid droplet and endoplasmic reticulum Citation: Mouskeftara, T.; Goulas, A.; membranes, where it is apparently involved in fatty acid redistribution between triglycerides and Ioannidou, D.; Ntenti, C.; Agapakis, phospholipids. A common polymorphism of PNPLA3 (I148M, rs738409), linked to increased PNPLA3 D.; Assimopoulou, A.; Gika, H. A presence on lipid droplets, is a strong genetic determinant of non-alcoholic fatty liver disease (NAFLD) Study of Blood Fatty Acids Profile in and of its progression.
    [Show full text]
  • The PNPLA3‐I148M Variant Increases Polyunsaturated Triglycerides in Human Adipose Tissue
    Received: 2 April 2020 | Revised: 23 April 2020 | Accepted: 2 May 2020 DOI: 10.1111/liv.14507 ORIGINAL ARTICLE The PNPLA3-I148M variant increases polyunsaturated triglycerides in human adipose tissue Sami Qadri1,2 | Susanna Lallukka-Brück1,2 | Panu K. Luukkonen1,2 | You Zhou2,3 | Amalia Gastaldelli4 | Marju Orho-Melander5 | Henna Sammalkorpi6 | Anne Juuti6 | Anne K. Penttilä6 | Julia Perttilä2 | Antti Hakkarainen7 | Tiina E. Lehtimäki7 | Matej Orešič8 | Tuulia Hyötyläinen8 | Leanne Hodson9,10 | Vesa M. Olkkonen2 | Hannele Yki-Järvinen1,2 1Department of Medicine, University of Helsinki and Helsinki University Hospital, Helsinki, Finland 2Minerva Foundation Institute for Medical Research, Helsinki, Finland 3Systems Immunity University Research Institute and Division of Infection and Immunity, School of Medicine, Cardiff University, Cardiff, UK 4Institute of Clinical Physiology, National Research Council, Pisa, Italy 5Department of Clinical Sciences Malmö, Lund University, Malmö, Sweden 6Department of Gastrointestinal Surgery, Abdominal Center, Helsinki University Hospital, Helsinki, Finland 7HUS Medical Imaging Center, Helsinki University Hospital, Helsinki, Finland 8Department of Chemistry, Örebro University, Örebro, Sweden 9Oxford Centre for Diabetes, Endocrinology and Metabolism, University of Oxford, Oxford, UK 10National Institute for Health Research Oxford Biomedical Research Centre, Oxford University Hospitals Foundation Trust, Oxford, UK Correspondence Sami Qadri, Biomedicum Helsinki 1, Room Abstract A417a, Haartmaninkatu 8, 00290 Helsinki, Background & Aims: The I148M variant in PNPLA3 is the major genetic risk factor for Finland. Email: [email protected] non-alcoholic fatty liver disease (NAFLD). The liver is enriched with polyunsaturated triglycerides (PUFA-TGs) in PNPLA3-I148M carriers. Gene expression data indicate Funding information Novo Nordisk Foundation; EU H2020-JTI- that PNPLA3 is liver-specific in humans, but whether it functions in adipose tissue IMI2 project 777377-2 Liver Investigation: (AT) is unknown.
    [Show full text]
  • Crosstalk Between Hedgehog Pathway and Energy Pathways In
    www.nature.com/scientificreports OPEN Crosstalk between Hedgehog pathway and energy pathways in human adipose-derived stem Received: 6 February 2018 Accepted: 14 May 2018 cells: A deep sequencing analysis of Published: xx xx xxxx polysome-associated RNA Patrícia Shigunov1, Lucas Titton Balvedi1, Marlon Dias Mariano Santos2, Roberto H. Herai3, Alessandra Melo de Aguiar1 & Bruno Dallagiovanna1 Adult stem cells are considered promising candidates for cellular therapies due to their capacity to diferentiate and self-renew. Diferentiation leads to changes in the metabolism, structure, and gene expression patterns of cells. Hedgehog is one of the pathways that is involved in the enhancement of osteogenesis and chondrogenesis in adult stem cells, but its mechanisms are poorly understood. In this study, we treated adipose tissue-derived stem cells (ADSC) with two well-characterized drugs, purmorphamine (Hedgehog pathway activator) and cyclopamine (Hedgehog pathway inhibitor), and identifed mRNAs associated with polysomes in each treatment group to determine the post transcriptional genetic networks governed by the Hedgehog pathway. Activation of the Hedgehog pathway by purmorphamine results in signifcant upregulation of mRNAs associated with cellular communication and signal transduction. Furthermore, our experiments show that cyclopamine acts late downregulating GLI1 expression in ADSCs but promotes the upregulation of mRNAs associated with energy pathways and metabolism at early times. Through in silico analysis, we identifed some miRNAs, such as miR-355, that could regulate these mRNAs association with polysomes and thereby modulate the Hedgehog pathway. Our results suggest that activation of the Hedgehog pathway by purmorphamine also results in a negative regulation of mRNAs in the protein translation machinery.
    [Show full text]
  • Meeting Abstracts from the 9Th International Conference on Cgmp: Generators, Efectors and Therapeutic Implications
    J Transl Med 2019, 17(Suppl 2):254 https://doi.org/10.1186/s12967-019-1994-0 Journal of Translational Medicine MEETING ABSTRACTS Open Access Meeting abstracts from the 9th International Conference on cGMP: Generators, Efectors and Therapeutic Implications Germany. 14–16 June 2019 Published: 15 August 2019 S 1‑01 References NO‑sGC signaling and therapeutics in sickle cell and hemolytic 1. Ataga KI, Moore CG, Jones S, Olajide O, Strayhorn D, Hinderliter A, diseases Orringer EP. Pulmonary hypertension in patients with sickle cell disease: a Mark Gladwin1,2 longitudinal study. Br J Haematol. 2006;134:109–15. 1University of Pittsburgh, Pittsburgh Heart, Lung, Blood and Vascular 2. De Castro LM, Jonassaint JC, Graham FL, Ashley‑Koch A and Telen MJ. Medicine Institut, Pittsburgh Pennsylvania, US; 2University of Pittsburgh, Pulmonary hypertension associated with sickle cell disease: clini‑ Division of Pulmonary, Allergy and Critical Care Medicine, Department cal and laboratory endpoints and disease outcomes. Am J Hematol. of Medicine, Pittsburgh Pennsylvania, US 2008;83:19–25. Correspondence: Mark Gladwin ‑ [email protected] 3. Gladwin MT, Sachdev V, Jison ML, Shizukuda Y, Plehn JF, Minter K, Brown Journal of Translational Medicine 2019, 17(2):S 1‑01 B, Coles WA, Nichols JS, Ernst I, Hunter LA, Blackwelder WC, Schechter AN, Rodgers GP, Castro O and Ognibene FP. Pulmonary hypertension as Introduction: Nitric oxide (NO) is a critical regulator of vascular home- a risk factor for death in patients with sickle cell disease. N Engl J Med. ostasis, increasing basal and fow-mediated vasodilation. Red blood 2004;350:886–95. cells can regulate NO bioavailability through an intrinsic nitrite (NO 2 ) 4.
    [Show full text]
  • Relevance of the Epigenetic Regulation Exercised by Hepatic Micrornas in the Fatty Liver Arena: from the Bedside to the Bench
    RELEVANCE OF THE EPIGENETIC REGULATION EXERCISED BY HEPATIC MICRORNAS IN THE FATTY LIVER ARENA: FROM THE BEDSIDE TO THE BENCH Jèssica Latorre Luque Per citar o enllaçar aquest document: Para citar o enlazar este documento: Use this url to cite or link to this publication: http://hdl.handle.net/10803/671499 ADVERTIMENT. L'accés als continguts d'aquesta tesi doctoral i la seva utilització ha de respectar els drets de la persona autora. Pot ser utilitzada per a consulta o estudi personal, així com en activitats o materials d'investigació i docència en els termes establerts a l'art. 32 del Text Refós de la Llei de Propietat Intel·lectual (RDL 1/1996). Per altres utilitzacions es requereix l'autorització prèvia i expressa de la persona autora. En qualsevol cas, en la utilització dels seus continguts caldrà indicar de forma clara el nom i cognoms de la persona autora i el títol de la tesi doctoral. No s'autoritza la seva reproducció o altres formes d'explotació efectuades amb finalitats de lucre ni la seva comunicació pública des d'un lloc aliè al servei TDX. Tampoc s'autoritza la presentació del seu contingut en una finestra o marc aliè a TDX (framing). Aquesta reserva de drets afecta tant als continguts de la tesi com als seus resums i índexs. ADVERTENCIA. El acceso a los contenidos de esta tesis doctoral y su utilización debe respetar los derechos de la persona autora. Puede ser utilizada para consulta o estudio personal, así como en actividades o materiales de investigación y docencia en los términos establecidos en el art.
    [Show full text]
  • PNPLA3 Gene Patatin Like Phospholipase Domain Containing 3
    PNPLA3 gene patatin like phospholipase domain containing 3 Normal Function The PNPLA3 gene provides instructions for making a protein called adiponutrin, which is found in fat cells (adipocytes) and liver cells (hepatocytes). The liver is a part of the digestive system that helps break down food, store energy, and remove waste products, including toxins. The function of the adiponutrin protein is not well understood, but it is thought to help regulate the development of adipocytes and the production and breakdown of fats (lipogenesis and lipolysis) in hepatocytes and adipocytes. Studies indicate that the activity (expression) of the PNPLA3 gene decreases during periods without food (fasting) and increases after eating, suggesting that the amount of adiponutrin protein produced is regulated as needed to help process and store fats in the diet. Health Conditions Related to Genetic Changes Non-alcoholic fatty liver disease A particular variation in the PNPLA3 gene has been associated with an increased risk of developing non-alcoholic fatty liver disease (NAFLD). NAFLD is a buildup of excessive fat in the liver that can lead to liver damage resembling the damage caused by alcohol abuse, but that occurs in people who do not drink heavily. In some cases NAFLD leads to inflammation of the liver (non-alcoholic steatohepatitis, also known as NASH) and permanent liver damage (cirrhosis). The PNPLA3 gene variation associated with NAFLD changes the protein building block ( amino acid) isoleucine to the amino acid methionine at protein position 148, written as Ile148Met or I148M. Research suggests that the altered protein leads to increased production and decreased breakdown of fats in the liver.
    [Show full text]
  • Pathway Analysis of Commonly Expressed Genes Found in Primates and in Mouse During Naïve State of Pluripotenc Keggid Kegg Names
    Pathway analysis of commonly expressed genes found in primates and in mouse during naïve state of pluripotency. keggid kegg_namesig_pw n_pw n_all n_sig p_hyper q_hyper genes hsa04110 Cell cycle 105 128 5869 2561 2.02E-19 4.64E-17 CDK2,CDK4,CDK6,CDK7,CDKN1A,CDKN1B,STAG1,CDKN2B,ANAPC10,MAD2L2,STAG2,GADD45G,DBF4,YWHAQ,CHEK1,CHEK2,CREBBP,GADD45A,E2F1,E2F3,E2F4,E2F5,EP300,ORC3,CDC26,ABL1,ANAPC13,SFN,GSK3B,ANAPC2,ANAPC4,HDAC1,HDAC2,MAD2L1,SMAD2,SMAD3,SMAD4,MCM2,MCM3,MCM4,MCM5,MCM6,MCM7,MDM2,MYC,GADD45B,ATM,ORC1,ORC2,ORC4,ORC5,FZR1,ANAPC7,ANAPC11,PLK1,ATR,PRKDC,RAD21,RB1,RBL1,CCND1,ANAPC1,SKP2,BUB1,BUB1B,TFDP1,TFDP2,TGFB1,TGFB2,TTK,WEE1,YWHAB,YWHAE,YWHAG,YWHAH,YWHAZ,ZBTB17,SMC1A,CDC7,CDC45,MAD1L1,CDC14A,CDC23,CDC16,CCNA2,CCNB1,CCND2,CCND3,CCNE1,CCNH,PKMYT1,SMC3,CCNB2,CCNE2,BUB3,PTTG1,ESPL1,CDK1,CDC6,CDC20,CDC25A,CDC25B,CDC25C,CDC27,RBX1 hsa03013 RNA transport116 152 5869 2561 1.03E-16 1.18E-14 SNUPN,EIF1,POP7,SRRM1,SAP18,EIF1B,PRMT5,TACC3,NXF1,RPP30,RPP38,PAIP1,POP4,RPP40,RNPS1,POP1,STRAP,DDX20,XPOT,CLNS1A,NUP35,RPP25L,EEF1A1,EEF1A2,EIF2S1,EIF2B1,EIF4A1,EIF4B,EIF4E,EIF4EBP1,EIF4G1,EIF4G2,EIF5,CASC3,NCBP2,ACIN1,NUP205,NUP210,NUP62,GEMIN5,UPF2,PABPC1,NXT1,NUP43,EIF3E,KPNB1,MAGOH,NCBP1,NUP88,NUP98,GEMIN4,NMD3,POP5,PHAX,NUP54,PNN,RPP25,GEMIN8,MAGOHB,ELAC1,NDC1,NUP133,NXT2,NUP107,THOC2,XPO5,RAN,RANBP2,RANGAP1,SENP2,UPF1,ELAC2,SEC13,UPF3B,SMN1,SUMO3,SUMO2,TPR,SUMO1,XPO1,NUP37,DDX39B,THOC6,GEMIN7,GEMIN6,RPP21,NUP85,THOC7,NUP214,AAAS,SEH1L,THOC3,RAE1,THOC5,EIF3A,EIF3B,EIF3C,EIF3D,EIF3F,EIF3G,EIF3H,EIF3I,EIF4G3,PABPC4,EIF2B4,EIF2B2,EIF2B5,EIF2S2,EIF4E2,NUP155,EIF5B,TGS1,NUP93,EIF4A3,NUP153,THOC1
    [Show full text]
  • Supplementary Table 1 and Supplementary Table 2
    Supplementary Table 1: The list of genes associated with platelet count retrieved from the Open Target Genetics platform (https://genetics.opentargets.org) Gene symbol Gene name GCSAML germinal center associated signaling and motility like SH2B3 SH2B adaptor protein 3 ARHGEF3 Rho guanine nucleotide exchange factor 3 HBS1L HBS1 like translational GTPase THPO thrombopoietin JAK2 Janus kinase 2 BAK1 BCL2 antagonist/killer 1 RCL1 RNA terminal phosphate cyclase like 1 TUBB1 tubulin beta 1 class VI DNM3 dynamin 3 GCKR glucokinase regulator ABCC4 ATP binding cassette subfamily C member 4 JMJD1C jumonji domain containing 1C HIC1 HIC ZBTB transcriptional repressor 1 CARMIL1 capping protein regulator and myosin 1 linker 1 LY75 lymphocyte antigen 75 CBL Cbl proto-oncogene SLFN14 schlafen family member 14 RASSF3 Ras association domain family member 3 ZFPM2 zinc finger protein, FOG family member 2 CABLES1 Cdk5 and Abl enzyme substrate 1 LY75-CD302 LY75-CD302 readthrough ACTN1 actinin alpha 1 MARK4 microtubule affinity regulating kinase 4 AK3 adenylate kinase 3 RCOR1 REST corepressor 1 CD36 CD36 molecule FABP6 fatty acid binding protein 6 GP1BA glycoprotein Ib platelet subunit alpha novel pleckstrin homology domain containing, family O member 2 (PLEKHO2) and ankyrin repeat and death domain containing 1A AC069368.1 (ANKDD1A) protein ATXN2 ataxin 2 TRABD TraB domain containing TPM4 tropomyosin 4 GFI1B growth factor independent 1B transcriptional repressor TERT telomerase reverse transcriptase EGF epidermal growth factor NREP neuronal regeneration related
    [Show full text]
  • Supplemental Figures 04 12 2017
    Jung et al. 1 SUPPLEMENTAL FIGURES 2 3 Supplemental Figure 1. Clinical relevance of natural product methyltransferases (NPMTs) in brain disorders. (A) 4 Table summarizing characteristics of 11 NPMTs using data derived from the TCGA GBM and Rembrandt datasets for 5 relative expression levels and survival. In addition, published studies of the 11 NPMTs are summarized. (B) The 1 Jung et al. 6 expression levels of 10 NPMTs in glioblastoma versus non‐tumor brain are displayed in a heatmap, ranked by 7 significance and expression levels. *, p<0.05; **, p<0.01; ***, p<0.001. 8 2 Jung et al. 9 10 Supplemental Figure 2. Anatomical distribution of methyltransferase and metabolic signatures within 11 glioblastomas. The Ivy GAP dataset was downloaded and interrogated by histological structure for NNMT, NAMPT, 12 DNMT mRNA expression and selected gene expression signatures. The results are displayed on a heatmap. The 13 sample size of each histological region as indicated on the figure. 14 3 Jung et al. 15 16 Supplemental Figure 3. Altered expression of nicotinamide and nicotinate metabolism‐related enzymes in 17 glioblastoma. (A) Heatmap (fold change of expression) of whole 25 enzymes in the KEGG nicotinate and 18 nicotinamide metabolism gene set were analyzed in indicated glioblastoma expression datasets with Oncomine. 4 Jung et al. 19 Color bar intensity indicates percentile of fold change in glioblastoma relative to normal brain. (B) Nicotinamide and 20 nicotinate and methionine salvage pathways are displayed with the relative expression levels in glioblastoma 21 specimens in the TCGA GBM dataset indicated. 22 5 Jung et al. 23 24 Supplementary Figure 4.
    [Show full text]