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Predicting Risks of Invasion of Caulerpa Species in Florida
University of Central Florida STARS Electronic Theses and Dissertations, 2004-2019 2006 Predicting Risks Of Invasion Of Caulerpa Species In Florida Christian Glardon University of Central Florida Part of the Biology Commons Find similar works at: https://stars.library.ucf.edu/etd University of Central Florida Libraries http://library.ucf.edu This Masters Thesis (Open Access) is brought to you for free and open access by STARS. It has been accepted for inclusion in Electronic Theses and Dissertations, 2004-2019 by an authorized administrator of STARS. For more information, please contact [email protected]. STARS Citation Glardon, Christian, "Predicting Risks Of Invasion Of Caulerpa Species In Florida" (2006). Electronic Theses and Dissertations, 2004-2019. 840. https://stars.library.ucf.edu/etd/840 PREDICTING RISKS OF INVASION OF CAULERPA SPECIES IN FLORIDA by CHRISTIAN GEORGES GLARDON B.S. University of Lausanne, Switzerland A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science in the Department of Biology in the College of Arts and Sciences at the University of Central Florida Orlando, Florida Spring Term 2006 ABSTRACT Invasions of exotic species are one of the primary causes of biodiversity loss on our planet (National Research Council 1995). In the marine environment, all habitat types including estuaries, coral reefs, mud flats, and rocky intertidal shorelines have been impacted (e.g. Bertness et al. 2001). Recently, the topic of invasive species has caught the public’s attention. In particular, there is worldwide concern about the aquarium strain of the green alga Caulerpa taxifolia (Vahl) C. Agardh that was introduced to the Mediterranean Sea in 1984 from the Monaco Oceanographic Museum. -
Acanthophora Dendroides Harvey (Rhodomelaceae), a New Record for the Atlantic and Pacific Oceans
15 3 NOTES ON GEOGRAPHIC DISTRIBUTION Check List 15 (3): 509–514 https://doi.org/10.15560/15.3.509 Acanthophora dendroides Harvey (Rhodomelaceae), a new record for the Atlantic and Pacific oceans Gabriela C. García-Soto, Juan M. Lopez-Bautista The University of Alabama, Department of Biological Sciences, Science and Engineering Complex, 1325 Hackberry Ln, Tuscaloosa, AL 35401, USA. Corresponding author: Gabriela García-Soto, [email protected] Abstract We record Acanthophora dendroides Harvey for the first time in the Atlantic Ocean. Two specimens from the Philip- pines were resolved as conspecific to the Atlantic A. dendroides in molecular analyses extending its geographic range to the Philippines. In light of new evidence provided by field-collected specimens ofAcanthophora spicifera (M.Vahl) Børgesen (generitype) from Florida and Venezuela, the flattened species A. pacifica(Setchell) Kraft, showed no affin- ity to Acanthophora sensu stricto, suggesting that the genus should be restricted to cylindrical species only. Key words Atlantic Ocean, Philippines, taxonomy. Academic editor: Luciane Fontana da Silva | Received 8 October 2018 | Accepted 21 January 2019 | Published 21 June 2019 Citation: García-Soto GC, Lopez-Bautista JM (2019) Acanthophora dendroides Harvey (Rhodomelaceae), a new record for the Atlantic and Pacific oceans. Check List 15 (3): 509–514. https://doi.org/10.15560/15.3.509 Introduction Kraft are restricted to the Pacific Ocean (Guiry and Guiry 2018), A. dendroides Harvey to the Indian Ocean The genus Acanthophora J.V. Lamouroux 1813 is a (Silva et al. 1996) and A. ramulosa Lindenb. ex. Kutz- member of the tribe Chondrieae and it is distinguished from other genera of the tribe by the presence of spirally ing appears to be confined to the Gulf of Guinea in West arranged acute spines (Gordon-Mills and Womersley Africa (Steentoft 1967). -
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BIODIVERSITAS ISSN: 1412-033X Volume 21, Number 5, May 2020 E-ISSN: 2085-4722 Pages: 1823-1832 DOI: 10.13057/biodiv/d210508 Morphological variation of two common sea grapes (Caulerpa lentillifera and Caulerpa racemosa) from selected regions in the Philippines JEREMAIAH L. ESTRADA♥, NONNATUS S. BAUTISTA, MARIBEL L. DIONISIO-SESE Plant Biology Division, Institute of Biological Sciences, College of Arts and Sciences, University of the Philippines Los Baños. College, Laguna 4031, Philippines. ♥email: [email protected] Manuscript received: 26 February 2020. Revision accepted: 6 April 2020. Abstract. Estrada JL, Bautista NS, Dionisio-Sese ML. 2020. Morphological variation of two common sea grapes (Caulerpa lentillifera and Caulerpa racemosa) from selected regions in the Philippines. Biodiversitas 21: 1823-1832. Seagrapes, locally known in the Philippines as “lato” or “ar-arusip”, are economically important macroalgae belonging to the edible species of the genus Caulerpa. This study characterized and compared distinct populations of sea grapes from selected regions in the Philippines and described the influence of physicochemical parameters of seawater on their morphology. Morphometric, cluster and principal component analyses showed that morphological plasticity exists in sea grapes species (Caulerpa lentillifera and Caulerpa racemosa) found in different sites in the Philippines. These are evident in morphometric parameters namely, assimilator height, space between assimilators, ramulus diameter and number of rhizoids on stolon wherein significant differences were found. This evident morphological plasticity was analyzed in relation to physicochemical parameters of the seawater. Assimilator height of C. racemosa is significantly associated and highly influenced by water depth, salinity, temperature and dissolved oxygen whereas for C. lentillifera depth and salinity are the significant influencing factors. -
Ribosomal Dna Phylogeny of the Bangiophycidae (Rhodophyta) and the Origin of Secondary Plastids1
American Journal of Botany 88(8): 1390±1400. 2001. RIBOSOMAL DNA PHYLOGENY OF THE BANGIOPHYCIDAE (RHODOPHYTA) AND THE ORIGIN OF SECONDARY PLASTIDS1 KIRSTEN M. MUÈ LLER,2,6 MARIANA C. OLIVEIRA,3 ROBERT G. SHEATH,2 AND DEBASHISH BHATTACHARYA4,5 2Department of Botany and Dean's Of®ce, University of Guelph, Guelph, Ontario, Canada, N1G 2W1; 3Department of Botany, Institute of Biosciences, University of SaÄo Paulo, R. MataÄo, Travessa 14, N. 321, SaÄo Paulo, SP, Brazil, CEP 05508-900; and 4Department of Biological Sciences, University of Iowa, 239 Biology Building, Iowa City, Iowa 52242-3110 USA We sequenced the nuclear small subunit ribosomal DNA coding region from 20 members of the Bangiophycidae and from two members of the Florideophycidae to gain insights into red algal evolution. A combined alignment of nuclear and plastid small subunit rDNA and a data set of Rubisco protein sequences were also studied to complement the understanding of bangiophyte phylogeny and to address red algal secondary symbiosis. Our results are consistent with a monophyletic origin of the Florideophycidae, which form a sister-group to the Bangiales. Bangiales monophyly is strongly supported, although Porphyra is polyphyletic within Bangia. Ban- giophycidae orders such as the Porphyridiales are distributed over three independent red algal lineages. The Compsopogonales sensu stricto, consisting of two freshwater families, Compsopogonaceae and Boldiaceae, forms a well-supported monophyletic grouping. The single taxon within the Rhodochaetales, Rhodochaete parvula, is positioned within a cluster containing members of the Erythropelti- dales. Analyses of Rubisco sequences show that the plastids of the heterokonts are most closely related to members of the Cyanidiales and are not directly related to cryptophyte and haptophyte plastid genomes. -
Refinements for the Amplification and Sequencing of Red Algal DNA Barcode and Redtol Phylogenetic Markers: a Summary of Current Primers, Profiles and Strategies
Review Algae 2013, 28(1): 31-43 http://dx.doi.org/10.4490/algae.2013.28.1.031 Open Access Refinements for the amplification and sequencing of red algal DNA barcode and RedToL phylogenetic markers: a summary of current primers, profiles and strategies Gary W. Saunders1,* and Tanya E. Moore1 1Centre for Environmental and Molecular Algal Research, Department of Biology, University of New Brunswick, Frederic- ton, NB E3B 5A3, Canada This review provides a comprehensive summary of the PCR primers and profiles currently in use in our laboratory for red algal DNA barcoding and phylogenetic research. While work focuses on florideophyte taxa, many of the markers have been applied successfully to the Bangiales, as well as other lineages previously assigned to the Bangiophyceae sensu lato. All of the primers currently in use with their respective amplification profiles and strategies are provided, which can include full fragment, overlapping fragments and what might best be called “informed overlapping fragments”, i.e., a fragment for a marker is amplified and sequenced for a taxon and those sequence data are then used to identify the best primers to amplify the remaining fragment(s) for that marker. We extend this strategy for the more variable markers with sequence from the external PCR primers used to “inform” the selection of internal sequencing primers. This summary will hopefully serve as a useful resource to systematists in the red algal community. Key Words: DNA barcode; Florideophyceae; molecular markers; phylogeny; polymerase chain reaction; primers; RedToL INTRODUCTION There can be little question that molecular techniques redtol/) (Vis et al. 2010). -
Algae Sheets-Invasive Elsewhere
ALGAE: NATIVE, INVASIVE ELSEWHERE Caulerpa taxifolia (Vahl) C. Agardh 1822 Caulerpa taxifolia has gained worldwide attention and the nickname killer algae because of its great success in coastal Mediterranean waters. It is a native species in Hawaii where it has not exhibited invasive tendencies. Division: Chlorophyta Class: Ulvophyceae Order: Bryopsidales Family: Caulerpaceae Genus: Caulerpa PHOTO: A. MEINESZ IDENTIFYING FEATURES HABITAT DESCRIPTION In Hawaii, small patches grow in sandy areas of tidepools and reef flats. In its maximum invasive Branches, feather-like, flattened, and upright, 3 - 10 cm state, it can cover all favorable available substrates, high, rising from a creeping stolon (runner), 1 - 2 mm including rock, sand, and mud. in diameter, anchored by rhizoids to the substrate. Branchlets oppositely attached to midrib, flattened, slightly curved upwards, tapered at both base and tip, and constricted at point of attachment. Midrib is slightly flattened, appearing oval in cross-section. This species resembles another Hawaiian Caulerpa species, C. sertularioides. C. sertularioides is more delicate and the branchlets are rounded, compared to the flattened branchlets of C. taxifolia. The rising branches are also more rounded toward apices, compared to the more angular, squared-off branches of C. taxifolia. COLOR PHOTO: A. MEINESZ Mediterranean Sea Dark green to light green. STRUCTURAL Thallus non-septate, coenocytic, traversed by trabecu- lae, which are extensions of cell wall; reproduction vegetative and sexual, latter anisogamous. Gametes liberated through papillae that develop on frond or occasionally on frond. Caulerpa taxifolia herbarium sheet © Botany, University of Hawaii at Manoa 2001 A-43 Caulerpa taxifolia DISTRIBUTION QUARANTINES HAWAII The Mediterranean clone or strain of Caulerpa taxifolia has been designated a U.S. -
Original Article
Available online at http://www.journalijdr.com ISSN: 2230-9926 International Journal of Development Research Vol. 09, Issue, 01, pp.25214-25215, January, 2019 ORIGINAL RESEARCH ARTICLEORIGINAL RESEARCH ARTICLE OPEN ACCESS SPECIES COMPOSITION, FREQUENCY AND TOTAL DENSITY OF SEAWEEDS *Christina Litaay, Hairati Arfah Centre for Deep Sea Research, Indonesian Institute of Sciences ARTICLE INFO ABSTRACT Article History: This study was conducted to determine the species composition, frequency and total density of Received 27th October, 2018 seaweeds found on the island of Nusalaut. There were 33 species of seaweed. Of the 33 species, Received in revised form 15 were from the class of Chlorophyceae (45.5%), 10 species from Rhodophyceae (30.3%), and 9 14th November, 2018 species from Phaeophyceae (27.3%).Total frequency showed the highest Gracilaria Accepted 01st December, 2018 (Rhodopyceae) of 29.63% in Akoon and Titawaii is 20.34%, while Halimeda (Chloropyceae) of th Published online 30 January, 2019 19.60% found on the Nalahia. Highest total frequency Phaeophyceae (Padina) is 12.96% found on the Akoon. The highest value of total density is village Ameth that is 1984 gr / m² is from the Key Words: Rhodophyceae group (Acantophora), Nalahia is 486 gr/m² from the Cholorophyceae group Frequency, (Halimeda), and Akoon that is 320 gr/m² from the Phaeophyceae group (Padina). Species composition, Seaweed, Total density. Copyright © 2019, Christina Litaay, Hairati Arfah. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Citation: Christina Litaay, Hairati Arfah. -
Halymeniaceae, Rhodophyta) in Bermuda, Western Atlantic Ocean, Including Five New Species and C
Trinity College Trinity College Digital Repository Faculty Scholarship 6-2018 A Revision of the Genus Cryptonemia (Halymeniaceae, Rhodophyta) in Bermuda, Western Atlantic Ocean, Including Five New Species and C. bermudensis (Collins & M. Howe) comb. nov [post-print] Craig W. Schneider Trinity College, [email protected] Christopher E. Lane University of Rhode Island Gary W. Saunders Follow this and additional works at: https://digitalrepository.trincoll.edu/facpub Part of the Biology Commons TEJP-2017-0083.R1 _____________________________________________________________________________ A revision of the genus Cryptonemia (Halymeniaceae, Rhodophyta) in Bermuda, western Atlantic Ocean, including five new species and C. bermudensis (Collins et M. Howe) comb. nov. Craig W. Schneidera, Christopher E. Laneb and Gary W. Saundersc aDepartment of Biology, Trinity College, Hartford, CT 06106, USA; bDepartment of Biological Sciences, University of Rhode Island, Kingston, RI 02881, USA; cCentre for Environmental & Molecular Algal Research, Department of Biology, University of New Brunswick, Fredericton, NB E3B 5A3, Canada Left Header: C. SCHNEIDER ET AL. _____________________________________________________________________________ CONTACT Craig W. Schneider. E-mail: [email protected] 2 ABSTRACT Cryptonemia specimens collected in Bermuda over the past two decades were analyzed using gene sequences encoding the large subunit of the nuclear ribosomal DNA and the large subunit of RuBisCO as genetic markers to elucidate their phylogenetic positions. They were additionally subjected to morphological assessment and compared with historical collections from the islands. Six species are presently found in the flora including C. bermudensis comb. nov., based on Halymenia bermudensis, and the following five new species: C. abyssalis, C. antricola, C. atrocostalis, C. lacunicola and C. perparva. Of the eight species known in the western Atlantic flora prior to this study, none is found in Bermuda. -
National Management Plan for the Genus Caulerpa
National Management Plan for the Genus Caulerpa Photo by R. Woodfield, Merkel and Associates Submitted to the Aquatic Nuisance Species Task Force Prepared by the Caulerpa Working Group Draft - October, 2004 Executive Summary A variety of surveys have confirmed at least twenty-one species and varieties of Caulerpa with populations in different regions of the United States (U.S.). Three species of Caulerpa are thought to be invasive due to their historic and ongoing invasions of U.S. and Deleted: species have warranted special foreign waters; Caulerpa taxifolia (Aquarium or Mediterranean strain), Caulerpa brachypus and concern Caulerpa racemosa. Deleted: to which they are not native In June 2000 divers detected C. taxifolia (Mediterranean strain) in Agua Hedionda Lagoon located in Carlsbad, CA and a second population in Huntington Harbor, CA. Divers first discovered non-native C. brachypus off the coast of southern Florida in 1999. Concerns have Deleted: The spread of C. brachypus also been raised by scientists about C. racemosa, which has spread rapidly in the Mediterranean, has raised concerns because of its potential impact on the reef ecosystem off but has not yet produced any problematic populations in U.S. waters. the southeastern coast of Florida. The impact of Caulerpa on natural systems in U.S. waters is unknown. It is possible to Deleted: Introduction and spread of infer likely impacts based on documented impacts in similar ecosystems in other regions of the Caulerpa species into world, where non-native Caulerpa species have become established. Deleted: remain largely unstudied so Documented impacts of invasive Caulerpa species include competition with marine plants and the likely impacts on U.S. -
Red and Green Algal Monophyly and Extensive Gene
Please cite this article in press as: Chan et al., Red and Green Algal Monophyly and Extensive Gene Sharing Found in a Rich Reper- toire of Red Algal Genes, Current Biology (2011), doi:10.1016/j.cub.2011.01.037 Current Biology 21, 1–6, February 22, 2011 ª2011 Elsevier Ltd All rights reserved DOI 10.1016/j.cub.2011.01.037 Report Red and Green Algal Monophyly and Extensive Gene Sharing Found in a Rich Repertoire of Red Algal Genes Cheong Xin Chan,1,5 Eun Chan Yang,2,5 Titas Banerjee,1 sequences in our local database, in which we included the Hwan Su Yoon,2,* Patrick T. Martone,3 Jose´ M. Estevez,4 23,961 predicted proteins from C. tuberculosum (see Table and Debashish Bhattacharya1,* S1 available online). Of these hits, 9,822 proteins (72.1%, 1Department of Ecology, Evolution, and Natural Resources including many P. cruentum paralogs) were present in C. tuber- and Institute of Marine and Coastal Sciences, Rutgers culosum and/or other red algae, 6,392 (46.9%) were shared University, New Brunswick, NJ 08901, USA with C. merolae, and 1,609 were found only in red algae. A total 2Bigelow Laboratory for Ocean Sciences, West Boothbay of 1,409 proteins had hits only to red algae and one other Harbor, ME 04575, USA phylum. Using this repertoire, we adopted a simplified recip- 3Department of Botany, University of British Columbia, 6270 rocal BLAST best-hits approach to study the pattern of exclu- University Boulevard, Vancouver, BC V6T 1Z4, Canada sive gene sharing between red algae and other phyla (see 4Instituto de Fisiologı´a, Biologı´a Molecular y Neurociencias Experimental Procedures). -
Diversity and Evolution of Algae: Primary Endosymbiosis
CHAPTER TWO Diversity and Evolution of Algae: Primary Endosymbiosis Olivier De Clerck1, Kenny A. Bogaert, Frederik Leliaert Phycology Research Group, Biology Department, Ghent University, Krijgslaan 281 S8, 9000 Ghent, Belgium 1Corresponding author: E-mail: [email protected] Contents 1. Introduction 56 1.1. Early Evolution of Oxygenic Photosynthesis 56 1.2. Origin of Plastids: Primary Endosymbiosis 58 2. Red Algae 61 2.1. Red Algae Defined 61 2.2. Cyanidiophytes 63 2.3. Of Nori and Red Seaweed 64 3. Green Plants (Viridiplantae) 66 3.1. Green Plants Defined 66 3.2. Evolutionary History of Green Plants 67 3.3. Chlorophyta 68 3.4. Streptophyta and the Origin of Land Plants 72 4. Glaucophytes 74 5. Archaeplastida Genome Studies 75 Acknowledgements 76 References 76 Abstract Oxygenic photosynthesis, the chemical process whereby light energy powers the conversion of carbon dioxide into organic compounds and oxygen is released as a waste product, evolved in the anoxygenic ancestors of Cyanobacteria. Although there is still uncertainty about when precisely and how this came about, the gradual oxygenation of the Proterozoic oceans and atmosphere opened the path for aerobic organisms and ultimately eukaryotic cells to evolve. There is a general consensus that photosynthesis was acquired by eukaryotes through endosymbiosis, resulting in the enslavement of a cyanobacterium to become a plastid. Here, we give an update of the current understanding of the primary endosymbiotic event that gave rise to the Archaeplastida. In addition, we provide an overview of the diversity in the Rhodophyta, Glaucophyta and the Viridiplantae (excluding the Embryophyta) and highlight how genomic data are enabling us to understand the relationships and characteristics of algae emerging from this primary endosymbiotic event. -
Journal of Pharmacology and Toxicological Studies
e-ISSN: 2319-9873 p-ISSN: 2347-2324 Research & Reviews: Journal of Pharmacology and Toxicological Studies A Short Study on Phylogenetics Indu Sama* Department of plant Pathology and forest genetics, Bharat University, India Review Article ABSTRACT Received: 06/09/2016 Accepted : 09/09/2016 Published: 12/09/2016 In science, phylogenetics is the investigation of transformative *For Correspondence connections among gatherings of life forms (e.g. species,populations), which are found through atomic sequencing information and morphological information grids. The term phylogeneticsderives from the Greek Department of plant Pathology expressions phylé (φυλή) and phylon (φῦλον), meaning "tribe", "faction", and forest genetics, Bharat "race" and the descriptive structure, genetikós(γενετικός), of the word University, India genesis (γένεσις) "source", "source", "conception". Indeed, phylogenesis is the procedure, phylogeny is science on this procedure, and phylogenetics is E-mail: [email protected] phylogeny in view of examination of successions of organic macromolecules (DNA, RNA and proteins, in the first). The consequence of phylogenetic Keywords: Phylogenetics, studies is a speculation about the developmental history of taxonomic Devolopment, Computation gatherings: their phylogeny. INTRODUCTION Development is a procedure whereby populaces are modified over the long run and may part into particular branches, hybridize together, or end by elimination [1 -15]. The transformative expanding procedure may be portrayed as a phylogenetic tree, and the spot of each of the different living beings on the tree is in view of a speculation about the arrangement in which developmental spreading occasions happened. Inhistorical phonetics, comparative ideas are utilized regarding connections in the middle of dialects; and in literary feedback withstemmatics [15-25].