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PDF Output of CLIC (Clustering by Inferred Co-Expression) PDF Output of CLIC (clustering by inferred co-expression) Dataset: Num of genes in input gene set: 58 Total number of genes: 16493 CLIC PDF output has three sections: 1) Overview of Co-Expression Modules (CEMs) Heatmap shows pairwise correlations between all genes in the input query gene set. Red lines shows the partition of input genes into CEMs, ordered by CEM strength. Each row shows one gene, and the brightness of squares indicates its correlations with other genes. Gene symbols are shown at left side and on the top of the heatmap. 2) Details of each CEM and its expansion CEM+ Top panel shows the posterior selection probability (dataset weights) for top GEO series datasets. Bottom panel shows the CEM genes (blue rows) as well as expanded CEM+ genes (green rows). Each column is one GEO series dataset, sorted by their posterior probability of being selected. The brightness of squares indicates the gene's correlations with CEM genes in the corresponding dataset. CEM+ includes genes that co-express with CEM genes in high-weight datasets, measured by LLR score. 3) Details of each GEO series dataset and its expression profile: Top panel shows the detailed information (e.g. title, summary) for the GEO series dataset. Bottom panel shows the background distribution and the expression profile for CEM genes in this dataset. Overview of Co-Expression Modules (CEMs) with Dataset Weighting Scale of average Pearson correlations Num of Genes in Query Geneset: 58. Num of CEMs: 1. 0.0 0.2 0.4 0.6 0.8 1.0 Birc5 Plk4 Cep55 Ccnf Sass6 Cep192 Poc1a Ccp110 Cep128 Cep76 Cenpj Alms1 Cetn3 Topors Cep19 Cetn2 Nin Poc5 Tsks Ftcd Cep41 Mphosph9 Bbs4 Cep250 Dzip1 Tubd1 Cetn1 Rock1 Ccsap Cep164 Fbf1 Herc2 Tubgcp3 Sfi1 Plk2 Spice1 Ofd1 Crocc Top2a Lrrcc1 Poc1b Neurl4 Sdccag8 Cntrob Cep104 Stard9 Dzip1l Cep170 Ahi1 Odf2 Cep135 Ift88 Tssk2 Ccdc92 Ift20 Cntln Parp3 Pla2g3 Birc5 Plk4 Cep55 Ccnf Sass6 Cep192 CEM 1 (421 datasets) Poc1a Ccp110 Cep128 Cep76 Cenpj Alms1 Cetn3 Topors Cep19 Cetn2 Nin Poc5 Tsks Ftcd Cep41 Mphosph9 Bbs4 Cep250 Dzip1 Tubd1 Cetn1 Rock1 Ccsap Cep164 Fbf1 Herc2 Tubgcp3 Sfi1 Plk2 Singletons Spice1 Ofd1 Crocc Top2a Lrrcc1 Poc1b Neurl4 Sdccag8 Cntrob Cep104 Stard9 Dzip1l Cep170 Ahi1 Odf2 Cep135 Ift88 Tssk2 Ccdc92 Ift20 Cntln Parp3 Pla2g3 Symbol Num ofCEMGenes:12.Predicted583.SelectedDatasets:421.Strength:19.5 CEM 1,Geneset"[G]centriole",Page1 Arhgap11a Mis18bp1 Nusap1 Shcbp1 Cep128 Ccp110 Cep192 Zwilch Ncaph Ccnb2 Cenpe Ncapg Spag5 Ube2c Cdca8 Ndc80 Kif20a Ccna2 Alms1 Cep76 Cep55 Esco2 Poc1a Sass6 Aurkb Aurka Cenpf Mki67 Kntc1 Cenpi Aspm Cenpj Spdl1 Sgol2 Sgol1 Birc5 Bub1 Kif22 Cdk1 Kif11 Tpx2 Melk Nuf2 Ccnf Prc1 Ect2 Plk4 Plk1 Kif4 Pbk 0.0 1.0 GSE38031 [8] GSE40513 [6] GSE20954 [14] Only showingfirst200datasets-Seetxtoutputforfulldetails. GSE12454 [13] GSE57543 [6] GSE17266 [59] GSE15741 [6] GSE27605 [8] GSE54215 [13] GSE50813 [24] GSE33308 [10] GSE28621 [21] GSE44260 [10] GSE21224 [16] GSE23845 [15] GSE39082 [6] GSE23925 [6] GSE17794 [44] GSE28457 [24] GSE30160 [6] GSE51883 [30] GSE17796 [39] GSE39034 [9] GSE32386 [13] GSE31359 [8] GSE13611 [8] GSE20500 [6] GSE23502 [8] GSE13873 [27] GSE16110 [16] GSE38696 [8] GSE34839 [6] GSE9763 [20] GSE4260 [6] GSE45143 [6] GSE12993 [6] GSE31028 [6] GSE10525 [18] GSE19004 [9] GSE53916 [6] GSE29241 [6] GSE21309 [9] GSE21900 [12] GSE6998 [32] GSE17316 [12] GSE32277 [33] GSE24628 [16] GSE54207 [9] GSE15326 [10] GSE19176 [10] GSE33156 [18] GSE16874 [12] GSE28035 [9] GSE51075 [12] GSE9338 [42] GSE51385 [8] GSE4768 [18] GSE18993 [13] GSE40655 [6] GSE13693 [9] GSE8039 [32] GSE46209 [21] GSE46606 [30] GSE13692 [8] GSE27546 [51] GSE30485 [15] GSE14012 [24] GSE7875 [16] GSE39469 [6] GSE48204 [6] GSE58296 [9] GSE48004 [6] GSE48382 [10] GSE6957 [12] GSE27261 [8] GSE11818 [6] GSE31099 [24] GSE21716 [28] GSE20620 [22] GSE15872 [18] GSE56135 [8] GSE48397 [10] GSE29318 [9] GSE38831 [7] GSE22005 [23] GSE30745 [12] GSE21299 [12] GSE52474 [154] GSE16925 [15] GSE55855 [6] GSE38693 [8] GSE35366 [78] GSE15267 [8] GSE35785 [10] GSE18135 [18] GSE26616 [6] GSE43419 [20] GSE24512 [29] GSE39449 [6] GSE39984 [18] GSE18358 [10] GSE45222 [27] GSE21278 [48] GSE25637 [9] GSE6383 [6] GSE8034 [17] GSE14406 [54] GSE31638 [15] GSE44175 [18] GSE39621 [51] GSE21393 [6] GSE15303 [11] GSE30834 [9] GSE46797 [6] GSE6689 [12] GSE47421 [24] GSE9287 [8] GSE28417 [12] GSE19616 [16] GSE13149 [25] GSE46185 [6] GSE26461 [6] GSE38257 [14] GSE46970 [15] GSE3126 [6] GSE9247 [15] GSE4694 [6] GSE39557 [15] GSE27932 [14] GSE7657 [12] GSE35593 [6] GSE20987 [12] GSE8091 [16] GSE12498 [12] GSE8960 [18] GSE36814 [20] GSE16675 [72] GSE9297 [27] GSE12881 [6] GSE22824 [24] GSE11420 [15] GSE26355 [6] GSE46942 [7] GSE18534 [15] GSE5041 [8] GSE17097 [20] GSE30855 [6] GSE51608 [6] GSE31570 [6] GSE29632 [42] GSE21606 [6] GSE13635 [6] GSE8660 [6] GSE21379 [10] CEM+ CEM GSE13408 [14] GSE34217 [7] GSE45744 [12] GSE51804 [10] GSE48790 [8] GSE27114 [6] 0.0 GSE47694 [10] GSE42047 [24] GSE49194 [14] Scale ofaveragePearsoncorrelations GSE42049 [8] GSE19657 [21] GSE41342 [26] GSE16992 [48] GSE14004 [9] GSE12956 [10] 0.2 GSE17096 [20] GSE20513 [12] GSE31313 [22] GSE6933 [15] GSE13493 [6] GSE31598 [12] GSE13106 [10] GSE13563 [6] GSE15580 [14] 0.4 GSE15770 [8] GSE19925 [6] GSE19885 [9] GSE44355 [10] GSE51243 [7] GSE34618 [7] GSE11186 [33] GSE10871 [32] GSE22283 [8] 0.6 GSE16389 [18] GSE23496 [9] GSE11149 [8] GSE58307 [20] GSE7348 [6] GSE5332 [12] GSE34729 [6] GSE54653 [6] GSE51628 [15] 0.8 GSE15155 [12] GSE7302 [6] GSE55705 [10] GSE8357 [6] Score 143.59 144.00 144.17 144.24 144.27 144.46 144.65 145.27 145.63 145.76 146.30 146.67 147.93 148.68 148.73 148.73 149.36 149.50 149.90 149.96 150.33 150.66 150.79 151.54 152.59 152.63 152.95 153.84 154.11 154.38 155.70 155.78 157.14 158.85 159.22 159.30 165.58 166.65 1.0 Notes Symbol Num ofCEMGenes:12.Predicted583.SelectedDatasets:421.Strength:19.5 CEM 1,Geneset"[G]centriole",Page2 Rad51ap1 Depdc1a Racgap1 Ncapg2 Ncapd2 Topbp1 Cdc25c Parpbp Ckap2l Incenp Cenpp Cenph Bub1b Kif18b Cenpk Ercc6l Cdc45 Cdca2 Ckap2 Kif18a Cdc20 Rad51 Cdca5 Spc24 Fbxo5 Fignl1 Brca1 Gins1 Prim1 Cenpl Ube2t Atad5 Atad2 Asf1b Pola1 Espl1 Uhrf1 Mastl Rrm2 Rrm1 Cdc6 Exo1 Nek2 Cks2 Ska3 Dbf4 Anln E2f7 Lig1 Stil 0.0 1.0 GSE38031 [8] GSE40513 [6] GSE20954 [14] Only showingfirst200datasets-Seetxtoutputforfulldetails. GSE12454 [13] GSE57543 [6] GSE17266 [59] GSE15741 [6] GSE27605 [8] GSE54215 [13] GSE50813 [24] GSE33308 [10] GSE28621 [21] GSE44260 [10] GSE21224 [16] GSE23845 [15] GSE39082 [6] GSE23925 [6] GSE17794 [44] GSE28457 [24] GSE30160 [6] GSE51883 [30] GSE17796 [39] GSE39034 [9] GSE32386 [13] GSE31359 [8] GSE13611 [8] GSE20500 [6] GSE23502 [8] GSE13873 [27] GSE16110 [16] GSE38696 [8] GSE34839 [6] GSE9763 [20] GSE4260 [6] GSE45143 [6] GSE12993 [6] GSE31028 [6] GSE10525 [18] GSE19004 [9] GSE53916 [6] GSE29241 [6] GSE21309 [9] GSE21900 [12] GSE6998 [32] GSE17316 [12] GSE32277 [33] GSE24628 [16] GSE54207 [9] GSE15326 [10] GSE19176 [10] GSE33156 [18] GSE16874 [12] GSE28035 [9] GSE51075 [12] GSE9338 [42] GSE51385 [8] GSE4768 [18] GSE18993 [13] GSE40655 [6] GSE13693 [9] GSE8039 [32] GSE46209 [21] GSE46606 [30] GSE13692 [8] GSE27546 [51] GSE30485 [15] GSE14012 [24] GSE7875 [16] GSE39469 [6] GSE48204 [6] GSE58296 [9] GSE48004 [6] GSE48382 [10] GSE6957 [12] GSE27261 [8] GSE11818 [6] GSE31099 [24] GSE21716 [28] GSE20620 [22] GSE15872 [18] GSE56135 [8] GSE48397 [10] GSE29318 [9] GSE38831 [7] GSE22005 [23] GSE30745 [12] GSE21299 [12] GSE52474 [154] GSE16925 [15] GSE55855 [6] GSE38693 [8] GSE35366 [78] GSE15267 [8] GSE35785 [10] GSE18135 [18] GSE26616 [6] GSE43419 [20] GSE24512 [29] GSE39449 [6] GSE39984 [18] GSE18358 [10] GSE45222 [27] GSE21278 [48] GSE25637 [9] GSE6383 [6] GSE8034 [17] GSE14406 [54] GSE31638 [15] GSE44175 [18] GSE39621 [51] GSE21393 [6] GSE15303 [11] GSE30834 [9] GSE46797 [6] GSE6689 [12] GSE47421 [24] GSE9287 [8] GSE28417 [12] GSE19616 [16] GSE13149 [25] GSE46185 [6] GSE26461 [6] GSE38257 [14] GSE46970 [15] GSE3126 [6] GSE9247 [15] GSE4694 [6] GSE39557 [15] GSE27932 [14] GSE7657 [12] GSE35593 [6] GSE20987 [12] GSE8091 [16] GSE12498 [12] GSE8960 [18] GSE36814 [20] GSE16675 [72] GSE9297 [27] GSE12881 [6] GSE22824 [24] GSE11420 [15] GSE26355 [6] GSE46942 [7] GSE18534 [15] GSE5041 [8] GSE17097 [20] GSE30855 [6] GSE51608 [6] GSE31570 [6] GSE29632 [42] GSE21606 [6] GSE13635 [6] GSE8660 [6] GSE21379 [10] CEM+ CEM GSE13408 [14] GSE34217 [7] GSE45744 [12] GSE51804 [10] GSE48790 [8] GSE27114 [6] 0.0 GSE47694 [10] GSE42047 [24] GSE49194 [14] Scale ofaveragePearsoncorrelations GSE42049 [8] GSE19657 [21] GSE41342 [26] GSE16992 [48] GSE14004 [9] GSE12956 [10] 0.2 GSE17096 [20] GSE20513 [12] GSE31313 [22] GSE6933 [15] GSE13493 [6] GSE31598 [12] GSE13106 [10] GSE13563 [6] GSE15580 [14] 0.4 GSE15770 [8] GSE19925 [6] GSE19885 [9] GSE44355 [10] GSE51243 [7] GSE34618 [7] GSE11186 [33] GSE10871 [32] GSE22283 [8] 0.6 GSE16389 [18] GSE23496 [9] GSE11149 [8] GSE58307 [20] GSE7348 [6] GSE5332 [12] GSE34729 [6] GSE54653 [6] GSE51628 [15] 0.8 GSE15155 [12] GSE7302 [6] GSE55705 [10] GSE8357 [6] Score 124.60 125.24 125.52 125.71 125.88 126.14 126.25 126.58 126.94 127.08 127.54 127.55 127.84 128.70 129.34 129.54 130.26 131.46 131.88 132.46 132.93 133.28 133.54 134.35 134.59 135.32 135.56 136.82 137.01 137.15 137.77 137.78 137.79 138.67 138.83 138.99 139.02 139.15 139.66 139.98 140.93 141.07 141.11 141.55 141.58 141.72 141.99 142.78 142.95 143.44 1.0 Notes 4930579G24Rik Symbol Num ofCEMGenes:12.Predicted583.SelectedDatasets:421.Strength:19.5 CEM 1,Geneset"[G]centriole",Page3 BC055324 Depdc1b Mms22l Rad54b Wdhd1 Cenpw Dnmt1 Cenpq Chtf18 Cenpu Cenpn Cdkn3 Kpna2 Trip13 Ccne2 Cks1b Rfwd3 Casc5 Gmnn Mcm2 Mcm6 Mcm7 Mcm4 Mcm5 Prim2 H2afx Pole2 Eme1 Prr11 Brip1 Gen1 Gsg2 Cdc7 Dsn1 Mtfr2 Hells Pcna Tipin Fen1 Ezh2 Orc6 Oip5 Rbl1 Rfc5 Rfc4 E2f8 Pole Blm Tk1 0.0 1.0 GSE38031 [8] GSE40513 [6] GSE20954 [14] Only showingfirst200datasets-Seetxtoutputforfulldetails.
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