A Comparative Analysis of the Postcranial Skeleton of Fossorial And
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Modeling and Partitioning the Nucleotide Evolutionary Process for Phylogenetic and Comparative Genomic Inference
University of Central Florida STARS Electronic Theses and Dissertations, 2004-2019 2007 Modeling And Partitioning The Nucleotide Evolutionary Process For Phylogenetic And Comparative Genomic Inference Todd Castoe University of Central Florida Part of the Biology Commons Find similar works at: https://stars.library.ucf.edu/etd University of Central Florida Libraries http://library.ucf.edu This Doctoral Dissertation (Open Access) is brought to you for free and open access by STARS. It has been accepted for inclusion in Electronic Theses and Dissertations, 2004-2019 by an authorized administrator of STARS. For more information, please contact [email protected]. STARS Citation Castoe, Todd, "Modeling And Partitioning The Nucleotide Evolutionary Process For Phylogenetic And Comparative Genomic Inference" (2007). Electronic Theses and Dissertations, 2004-2019. 3111. https://stars.library.ucf.edu/etd/3111 MODELING AND PARTITIONING THE NUCLEOTIDE EVOLUTIONARY PROCESS FOR PHYLOGENETIC AND COMPARATIVE GENOMIC INFERENCE by TODD A. CASTOE B.S. SUNY – College of Environmental Science and Forestry, 1999 M.S. The University of Texas at Arlington, 2001 A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Biomolecular Sciences in the Burnett College of Biomedical Sciences at the University of Central Florida Orlando, Florida Spring Term 2007 Major Professor: Christopher L. Parkinson © 2007 Todd A. Castoe ii ABSTRACT The transformation of genomic data into functionally relevant information about the composition of biological systems hinges critically on the field of computational genome biology, at the core of which lies comparative genomics. The aim of comparative genomics is to extract meaningful functional information from the differences and similarities observed across genomes of different organisms. -
Literature Cited in Lizards Natural History Database
Literature Cited in Lizards Natural History database Abdala, C. S., A. S. Quinteros, and R. E. Espinoza. 2008. Two new species of Liolaemus (Iguania: Liolaemidae) from the puna of northwestern Argentina. Herpetologica 64:458-471. Abdala, C. S., D. Baldo, R. A. Juárez, and R. E. Espinoza. 2016. The first parthenogenetic pleurodont Iguanian: a new all-female Liolaemus (Squamata: Liolaemidae) from western Argentina. Copeia 104:487-497. Abdala, C. S., J. C. Acosta, M. R. Cabrera, H. J. Villaviciencio, and J. Marinero. 2009. A new Andean Liolaemus of the L. montanus series (Squamata: Iguania: Liolaemidae) from western Argentina. South American Journal of Herpetology 4:91-102. Abdala, C. S., J. L. Acosta, J. C. Acosta, B. B. Alvarez, F. Arias, L. J. Avila, . S. M. Zalba. 2012. Categorización del estado de conservación de las lagartijas y anfisbenas de la República Argentina. Cuadernos de Herpetologia 26 (Suppl. 1):215-248. Abell, A. J. 1999. Male-female spacing patterns in the lizard, Sceloporus virgatus. Amphibia-Reptilia 20:185-194. Abts, M. L. 1987. Environment and variation in life history traits of the Chuckwalla, Sauromalus obesus. Ecological Monographs 57:215-232. Achaval, F., and A. Olmos. 2003. Anfibios y reptiles del Uruguay. Montevideo, Uruguay: Facultad de Ciencias. Achaval, F., and A. Olmos. 2007. Anfibio y reptiles del Uruguay, 3rd edn. Montevideo, Uruguay: Serie Fauna 1. Ackermann, T. 2006. Schreibers Glatkopfleguan Leiocephalus schreibersii. Munich, Germany: Natur und Tier. Ackley, J. W., P. J. Muelleman, R. E. Carter, R. W. Henderson, and R. Powell. 2009. A rapid assessment of herpetofaunal diversity in variously altered habitats on Dominica. -
Crocodylus Moreletii
ANFIBIOS Y REPTILES: DIVERSIDAD E HISTORIA NATURAL VOLUMEN 03 NÚMERO 02 NOVIEMBRE 2020 ISSN: 2594-2158 Es un publicación de la CONSEJO DIRECTIVO 2019-2021 COMITÉ EDITORIAL Presidente Editor-en-Jefe Dr. Hibraim Adán Pérez Mendoza Dra. Leticia M. Ochoa Ochoa Universidad Nacional Autónoma de México Senior Editors Vicepresidente Dr. Marcio Martins (Artigos em português) Dr. Óscar A. Flores Villela Dr. Sean M. Rovito (English papers) Universidad Nacional Autónoma de México Editores asociados Secretario Dr. Uri Omar García Vázquez Dra. Ana Bertha Gatica Colima Dr. Armando H. Escobedo-Galván Universidad Autónoma de Ciudad Juárez Dr. Oscar A. Flores Villela Dra. Irene Goyenechea Mayer Goyenechea Tesorero Dr. Rafael Lara Rezéndiz Dra. Anny Peralta García Dr. Norberto Martínez Méndez Conservación de Fauna del Noroeste Dra. Nancy R. Mejía Domínguez Dr. Jorge E. Morales Mavil Vocal Norte Dr. Hibraim A. Pérez Mendoza Dr. Juan Miguel Borja Jiménez Dr. Jacobo Reyes Velasco Universidad Juárez del Estado de Durango Dr. César A. Ríos Muñoz Dr. Marco A. Suárez Atilano Vocal Centro Dra. Ireri Suazo Ortuño M. en C. Ricardo Figueroa Huitrón Dr. Julián Velasco Vinasco Universidad Nacional Autónoma de México M. en C. Marco Antonio López Luna Dr. Adrián García Rodríguez Vocal Sur M. en C. Marco Antonio López Luna Universidad Juárez Autónoma de Tabasco English style corrector PhD candidate Brett Butler Diseño editorial Lic. Andrea Vargas Fernández M. en A. Rafael de Villa Magallón http://herpetologia.fciencias.unam.mx/index.php/revista NOTAS CIENTÍFICAS SKIN TEXTURE CHANGE IN DIASPORUS HYLAEFORMIS (ANURA: ELEUTHERODACTYLIDAE) ..................... 95 CONTENIDO Juan G. Abarca-Alvarado NOTES OF DIET IN HIGHLAND SNAKES RHADINAEA EDITORIAL CALLIGASTER AND RHADINELLA GODMANI (SQUAMATA:DIPSADIDAE) FROM COSTA RICA ..... -
An Unusual Case of Scavenging Behavior in Rhinella Schneideri in the Upper Paraná River Basin, Brazil
Bol. Asoc. Herpetol. Esp. (2012) 23(1) 57 Minoli, I., Feltrin, N. & Ávila, L.J. 2009. Un caso de polidac - Herpetología , 21: 115-116. tilia en Liolaemus petrophilus (Iguana: Squamata: Rostand, J. 1950. Polydactylie chez la Greanouille rousse Liolaemini). Cuadernos de herpetología , 23: 89-92. (Rana temporaria ) et clinodactylie chez la Greanouille Norval, G., Mao, J.J., Bursey, C.R. & Goldberg, S.R. 2009. A verte ( Rana esculenta ). Comptes Rendus des Séances de la deformed hind limb of an invasive free-living brown Société de Biologié , 144: 19-20. anole ( Anolis sagrei Duméril and Bribon, 1837) from Sas, I. & Kovacs, E.H. 2006. Hexadactyly case at a Rana kl. Hualien City, Taiwan. Herpetology Notes , 2: 219-221. esculenta sample from the north-western of Romania. Ouellet, M. 2000. Amphibian deformities: current state of Analele Universitatiidin Oradea , 13: 52-55. knowledge. 617-661. In : Linder, G., Bishop, C.A. & Semenov, D.V. & Ivanova, S.A. 1995. Embryonic abnormali - Sparling, D.W. (eds.), Ecotoxicology of Amphibians and ties in lizards Lacerta vivipara (Sauria: Lacertidae) Reptiles . Society of Environmental Toxicology and Inhabiting a radioactive contaminated territory. Russian Chemistry (SETAC) Press. Pensacola, Florida. Journal of Herpetology , 2: 166-169. Pelegrin, N. 2007. Presence of a polydactylous Tropidurus ethe - Skelly, D.K., Bolden, S.R., Freidenburg, L.K., Freidenfelds, N.A. ridgei (Squamata: Iguanidae: Tropidurinae) in the dry & Levey, R. 2007. Ribeiroia infection is not responsible for Chacho of Cordoba Province, Argentina. Cuadernos de Vermont amphibian deformities. Eco Health , 4: 156-163. An unusual case of scavenging behavior in Rhinella schneideri in the upper Paraná River basin, Brazil Fabrício H. -
Effects of Abandoned Eucalyptus Plantations on Lizard Communities in the Brazilian Cerrado
Biodivers Conserv (2014) 23:3155–3170 DOI 10.1007/s10531-014-0771-x ORIGINAL PAPER Effects of abandoned Eucalyptus plantations on lizard communities in the Brazilian Cerrado Alison M. Gainsbury • Guarino R. Colli Received: 4 November 2013 / Revised: 11 July 2014 / Accepted: 29 July 2014 / Published online: 8 August 2014 Ó Springer Science+Business Media Dordrecht 2014 Abstract The rapid expansion of human altered landscapes affects biodiversity on every continent. A fundamental goal of conservation biologists is to understand why certain species are at risk of extinction while others are able to persist in human altered landscapes. Afforestation, the conversion of unforested lands to planted forest, is rapidly altering many natural landscapes worldwide. In the Cerrado (Brazilian savanna), a global biodiversity hotspot, a shortage of government incentives has the landscape riddled with abandoned plantation forests that are not subject to active restoration projects. Studies investigating the impacts of abandoned plantations on biodiversity are strikingly limited. We examine the effects of abandoned Eucalyptus plantations on the structure of Cerrado lizard com- munities. We assessed changes in lizard capture, richness and equitability along cerrado sensu stricto—Eucalyptus transects. Our results indicate abandoned Eucalyptus plantations have subsets of Cerrado species persisting with a great loss of endemic species. The cerrado sensu stricto—Eucalyptus linear transect analysis demonstrated distance from native habitat is positively correlated with loss of biodiversity. We performed corre- spondence analyses to summarize the variation in species captures across different sites, habitats and pitfall array positions. These analyses depicted strong species associations between habitats and their pitfall array positions. This study is the first to show the negative impacts of abandoned Eucalyptus plantations on Cerrado lizard communities, serving as a cautionary tale of Cerrado biodiversity non-resilience in abandoned Eucalyptus planta- tions. -
Reserva Natural Laguna Blanca, Departmento San Pedro
Russian Journal of Herpetology Vol. 23, No. 1, 2016, pp. 25 – 34 RESERVA NATURAL LAGUNA BLANCA, DEPARTAMENTO SAN PEDRO: PARAGUAY’S FIRST IMPORTANT AREA FOR THE CONSERVATION OF AMPHIBIANS AND REPTILES? Paul Smith,1,2 Karina Atkinson,2 Jean-Paul Brouard,2 Helen Pheasey2 Submitted December 30, 2014. Geographical sampling bias and restricted search methodologies have resulted in the distribution of Paraguayan reptiles and amphibians being patchily known. Available data is almost entirely based on brief collecting trips and rapid ecological inventories, often several decades apart, which inevitably struggle to detect more inconspicuous species and patterns of abundance. This has led to a deficit in our knowledge of the true distribution and abun- dance of Paraguayan reptiles and amphibians. The establishment of the NGO Para La Tierra at Reserva Natural Laguna Blanca (RNLB), Depto. San Pedro, Paraguay allowed the first modern sustained, multi-method inventory of Paraguayan reptiles and amphibians to be performed at a single site. Despite the small size of the reserve (804 ha), a total of 57 reptiles (12 of national conservation concern) and 32 amphibians (one of national conserva- tion concern) were collected during five years of random sampling, qualifying RNLB as the most biodiverse re- serve for reptiles and amphibians in the country. Six species occurring at RNLB have been found at no other Para- guayan locality. Legal protection for this private reserve expired in January 2015 and the conservation implica- tions of the inventory results are discussed. It is proposed that the long term legal protection of the reserve be con- sidered a national conservation priority and that the diversity of the herpetofauna be recognized with the designa- tion of RNLB as Paraguay’s first Important Area for the Conservation of Amphibians and Reptiles. -
Digit Evolution in Gymnophthalmid Lizards JULIANA G
Int. J. Dev. Biol. 58: 895-908 (2014) doi: 10.1387/ijdb.140255jg www.intjdevbiol.com Digit evolution in gymnophthalmid lizards JULIANA G. ROSCITO*,1, PEDRO M.S. NUNES2 and MIGUEL T. RODRIGUES1 1Departamento de Zoologia, Instituto de Biociências, Universidade de São Paulo-SP and 2Departamento de Zoologia, Centro de Ciências Biológicas, Universidade Federal de Pernambuco, Brazil ABSTRACT The tetrapod limb is a highly diverse structure, and reduction or loss of this structure accounts for many of the limb phenotypes observed within species. Squamate reptiles are one of the many tetrapod lineages in which the limbs have been greatly modified from the pentadactyl generalized pattern, including different degrees of reduction in the number of limb elements to complete limblessness. Even though limb reduction is widespread, the evolutionary and develop- mental mechanisms involved in the formation of reduced limb morphologies remains unclear. In this study, we present an overview of limb morphology within the microteiid lizard group Gymn- ophthalmidae, focusing on digit arrangement. We show that there are two major groups of limb- reduced gymnophthalmids. The first group is formed by lizard-like (and frequently pentadactyl) species, in which minor reductions (such as the loss of 1-2 phalanges mainly in digits I and V) are the rule; these morphologies generally correspond to those seen in other squamates. The second group is formed by species showing more drastic losses, which can include the absence of an ex- ternally distinct limb in adults. We also present the expression patterns of Sonic Hedgehog (Shh) in the greatly reduced fore and hindlimb of a serpentiform gymnophthalmid. -
Os Lagartos Gimnoftalmídeos (Squamata: Gymnophthalmidae) 365
OS LAGARTOS GIMNOFTALMÍDEOS (SQUAMATA: GYMNOPHTHALMIDAE) 365 OS LAGARTOS GIMNOFTALMÍDEOS (SQUAMATA: GYMNOPHTHALMIDAE) DO CARIRI PARAIBANO E DO SERIDÓ DO RIO GRANDE DO NORTE, NORDESTE DO BRASIL: CONSIDERAÇÕES ACERCA DA DISTRIBUIÇÃO GEOGRÁFICA E ECOLOGIA Fagner Ribeiro Delfim1* & Eliza Maria Xavier Freire2,3 1 Programa de Pós-Graduação em Ciências Biológicas - Área de Concentração em Zoologia. Departamento de Sistemática e Ecologia, Centro de Ciências Exatas e da Natureza, Universidade Federal da Paraíba. CEP: 58051-900. João Pessoa, PB, Brasil. 2 Departamento de Botânica, Ecologia e Zoologia, Universidade Federal do Rio Grande do Norte. CEP: 59072-970. Natal, RN, Brasil 3 Professora credenciada no PPG em Ciências Biológicas - Área de Concentração em Zoologia, Universidade Federal da Paraíba. * E-mail: [email protected] RESUMO O presente estudo objetivou inventariar a fauna de gimnoftalmídeos em algumas áreas de Caatinga no Cariri Paraibano e no Seridó do Rio Grande do Norte, mapear suas respectivas distribuições geográficas e discorrer sobre a história natural e uso do hábitat das mesmas. Quatro espécies de lagartos da família Gymnophthalmidae (Anotosaura vanzolinia; Acratosaura mentalis; Micrablepharus maximiliani e Vanzosaura rubricauda) foram registradas nas áreas amostradas. Apenas Vanzosaura rubricauda foi encontrada em todas as áreas exploradas, enquadrando-se em sua condição de táxon amplamente distribuído nas formações de vegetação aberta da América do Sul. Anotosaura vanzolinia e Acratosaura mentalis foram registradas em novas localidades, ampliando desta maneira suas respectivas distribuições no estado da Paraíba. A proposta de distribuição das espécies de gimnoftalmídeos ocorrentes na Caatinga foi mantida, sendo, portanto, improvável a ocorrência das espécies ligadas ao Campo de Dunas Paleoquaternárias do Médio Rio São Francisco em localidades de caatingas típicas, sem solos arenosos e/ou que não tiveram ligação histórico-geológica com esta área. -
Gymnophthalmid and Tropidurid Lizards As Prey of the Crab-Eating Fox, Cerdocyon Thous (Linnaeus, 1766) (Carnivora: Canidae)
Herpetology Notes, volume 5: 463-466 (2012) (published online on 7 October 2012) Gymnophthalmid and tropidurid lizards as prey of the crab-eating fox, Cerdocyon thous (Linnaeus, 1766) (Carnivora: Canidae) Ellen Cândida Ataide Gomes1,2, Ana Paula Gomes Tavares1,2, Patricia Avello Nicola1,2, Luiz Cezar Machado Pereira1,2 and Leonardo Barros Ribeiro1,2,* Gymnophthalmid lizards occur from southern of C. thous. In the present study we report on two Mexico to Argentina, in the Caribbean, and on hitherto undescribed cases of lizard predation by some continental shelf islands of Central and South the crab-eating fox in the semiarid region of Brazil. America east of the Andes, and are generally small During a monitoring study of mastofauna conducted or medium-sized (Pellegrino et al., 2001; Vitt and by the Center for Fauna Conservation and Management Caldwell 2009). Currently, 85 species distributed of the Caatinga (CEMAFAUNA-CAATINGA/ within 33 genera are recognized in Brazil (Bérnils UNIVASF), eight fecal samples of Cerdocyon thous and Costa, 2011), some of which are restricted to were collected between September 2010 and January the northeastern region (Rodrigues et al., 2007; Rodrigues and Santos 2008; Rodrigues et al., 2009). The Tropiduridae is a reptilian family comprising a large number of known species among the Neotropical lizards (Torres-Carvajal, 2004). There are 36 species of tropidurids in Brazil, distributed into seven genera (Bérnils and Costa, 2011) living in open and forest habitats throughout the country (Howland, Vitt and Lopez, 1990; Vitt, Zani and Ávila-Pires, 1997; Ribeiro, Sousa and Gomides, 2009; Ribeiro and Freire, 2011). The crab-eating fox, Cerdocyon thous (Linnaeus, 1766) (Fig. -
Nótulasas FAUNÍSTICAS 81 Segunda Serie Noviembre 2011
ISSN-0327-0017 NótulNótulasas FAUNÍSTICAS 81 Segunda Serie Noviembre 2011 NUEVOS REGISTROS DE GYMNOPHTHALMIDAE (REPTILIA: SAURIA) EN LA RESERVA NATURAL LAGUNA BLANCA, DEPARTAMENTO SAN PEDRO, PARAGUAY Y UNA CLAVE PARA LAS ESPECIES PARAGUAYAS Paul Smith1, 2, Pier Cacciali2, Karina Atkinson2, Anna Källberg2, Helen Pheasey2 1 Fauna Paraguay: www.faunaparaguay.com. Correo electrónico: [email protected] 2 Para La Tierra, Reserva Natural Laguna Blanca, Dpto. San Pedro, Paraguay: www.paralatierra.org. Correo electrónico: [email protected] RESUMEN. Se disponen nuevos datos de distribución para cuatro especies de la familia Gymnophthalmidae de la Reserva Natural Laguna Blanca. Además se brinda una clave para la identificación de todas las especies paraguayas. ABSTRACT. NEW RECORDS OF GYMNOPHTHALMIDAE (REPTILIA: SAURIA) FROM THE LAGUNA BLANCA NATURAL RESERVE, SAN PEDRO DEPARTMENT, PARAGUAY, AND AN IDENTIFICATION KEY FOR PARAGUAYAN SPECIES OF THE FAMILY. New distribution data on four species of Paraguayan Gymnophthalmidae from Laguna Blanca Natural Reserve are provided. An identification key for all Paraguayan species of this enigmatic lizard family is also provided. INTRODUCCIÓN va Natural Laguna Blanca, Departamento San Pedro, Paraguay. Los “Microteidos” (Gymnophthalmidae) son una fa- milia de pequeñas lagartijas que está usualmente poco representada en colecciones biológicas, y generalmen- MATERIALES Y MÉTODOS te incluye especies difíciles de observar en el campo. A pesar de una semejanza superficial con la Familia El trabajo de campo fue realizado en la Estación Bio- Teiidae (Cei, 1993) estas pequeñas lagartijas pueden ser lógica Para La Tierra en la Reserva Natural de Laguna distinguidas por su cuerpo alargado, extremidades loco- Blanca (RNLB) (23º 48´ 45.4” S, 56º 17´ 41.7” W ) motoras reducidas, la fusión de algunas grandes esca- (ver Mapa) en el bioma del Cerrado en el noreste de mas cefálicas y ocasionalmente la ausencia de párpados Paraguay. -
Squamata, Gymnophthalmidae)
Phyllomedusa 3(2):83-94, 2004 © 2004 Melopsittacus Publicações Científicas ISSN 1519-1397 High frequency of pauses during intermittent locomotion of small South American gymnophthalmid lizards (Squamata, Gymnophthalmidae) Elizabeth Höfling1 and Sabine Renous2 1 Departamento de Zoologia, Instituto de Biociências, Universidade de São Paulo, Rua do Matão, Travessa 14, n° 321, 05508-900, São Paulo, SP, Brazil. E-mail: [email protected]. 2 USM 302, Département d’Ecologie et Gestion de la Biodiversité, Muséum National d’Histoire Naturelle, 55 rue Buffon, 75005, Paris, France. Abstract High frequency of pauses during intermittent locomotion of small South American gymnophthalmid lizards (Squamata, Gymnophthalmidae). We studied the locomotor behavior of two closely-related species of Gymnophthalmini lizards, Vanzosaura rubricauda and Procellosaurinus tetradactylus, that was imaged under laboratory conditions at a rate of 250 frames/s with a high-speed video camera (MotionScope PCI 1000) on four different substrates with increasing degrees of roughness (smooth perspex, cardboard, glued sand, and glued gravel). Vanzosaura rubricauda and P. tetradactylus are both characterized by intermittent locomotion, with pauses occurring with high frequency and having a short duration (from 1/10 to 1/3 s), and taking place in rhythmic locomotion in an organized fashion during all types of gaits and on different substrates. The observed variations in duration and frequency of pauses suggest that in V. rubricauda mean pause duration is shorter and pause frequency is higher than in P. tetradactylus. The intermittent locomotion observed in V. rubricauda and P. tetradactylus imaging at 250 frames/s is probably of interest for neurobiologists. In the review of possible determinants, the phylogenetic relationships among the species of the tribe Gymnophthalmini are focused. -
SOUTH AMERICAN LIZARDS in the COLD Made and Many Lots Of
59.81, 1 (8) 59.81, 1.07 (74.71) Article VII.-SOUTH AMERICAN LIZARDS IN THE COLD LECTION OF THE AMERICAN MUSEUM OF NATURAL HISTORY BY CHARLES E. BURT AND MAY DANHEIM BURT CONTENTS FIGURES 1 TO 15 PAGE INTRODUCTION............................................. ........... 227 SUMMARY OF TAXONOMIC ALTERATIONS...................................... 228 LIST OF THE SPECIES OF SOUTH AMERICAN LIZARDS IN THE COLLECTION OF THE AMERICAN MUSEUM OF NATURAL HISTORY.......................... 232 SYSTEMATIC DISCuSSION OF THE LIZARDS OF THE FAMILIES REPRESENTED IN THE COLLECTION................................................... 238 Amphisbaenidal ................................................ 238 Anguida ........................................................ 241 Gekkonida ................................................... 243 Iguanide ........................................................ 254 Scincidle....................................................... 299 Teiide.......................................................... 302 LITERATURE CITED................................................. 380 INDEX..... 387 INTRODUCTION In the past, particularly during the last twenty years, many mem- bers of the scientific staff of The American Museum of Natural History have maintained an active interest in the fauna of South America. As a consequence of this, numerous expeditions and exchanges have been made and many lots of amphibians and reptiles have accumulated. The importance of these specimens will be evident to those who study the papers based upon