SNAP23 Is Required for Constitutive and Regulated Exocytosis in Mouse Oocytes†
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Protein Interaction Network of Alternatively Spliced Isoforms from Brain Links Genetic Risk Factors for Autism
ARTICLE Received 24 Aug 2013 | Accepted 14 Mar 2014 | Published 11 Apr 2014 DOI: 10.1038/ncomms4650 OPEN Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism Roser Corominas1,*, Xinping Yang2,3,*, Guan Ning Lin1,*, Shuli Kang1,*, Yun Shen2,3, Lila Ghamsari2,3,w, Martin Broly2,3, Maria Rodriguez2,3, Stanley Tam2,3, Shelly A. Trigg2,3,w, Changyu Fan2,3, Song Yi2,3, Murat Tasan4, Irma Lemmens5, Xingyan Kuang6, Nan Zhao6, Dheeraj Malhotra7, Jacob J. Michaelson7,w, Vladimir Vacic8, Michael A. Calderwood2,3, Frederick P. Roth2,3,4, Jan Tavernier5, Steve Horvath9, Kourosh Salehi-Ashtiani2,3,w, Dmitry Korkin6, Jonathan Sebat7, David E. Hill2,3, Tong Hao2,3, Marc Vidal2,3 & Lilia M. Iakoucheva1 Increased risk for autism spectrum disorders (ASD) is attributed to hundreds of genetic loci. The convergence of ASD variants have been investigated using various approaches, including protein interactions extracted from the published literature. However, these datasets are frequently incomplete, carry biases and are limited to interactions of a single splicing isoform, which may not be expressed in the disease-relevant tissue. Here we introduce a new interactome mapping approach by experimentally identifying interactions between brain-expressed alternatively spliced variants of ASD risk factors. The Autism Spliceform Interaction Network reveals that almost half of the detected interactions and about 30% of the newly identified interacting partners represent contribution from splicing variants, emphasizing the importance of isoform networks. Isoform interactions greatly contribute to establishing direct physical connections between proteins from the de novo autism CNVs. Our findings demonstrate the critical role of spliceform networks for translating genetic knowledge into a better understanding of human diseases. -
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Soluble NSF Attachment Protein Receptors (SNAREs) in RBL-2H3 Mast Cells: Functional Role of Syntaxin 4 in Exocytosis and Identification of a Vesicle-Associated This information is current as Membrane Protein 8-Containing Secretory of September 25, 2021. Compartment Fabienne Paumet, Joëlle Le Mao, Sophie Martin, Thierry Galli, Bernard David, Ulrich Blank and Michèle Roa Downloaded from J Immunol 2000; 164:5850-5857; ; doi: 10.4049/jimmunol.164.11.5850 http://www.jimmunol.org/content/164/11/5850 http://www.jimmunol.org/ References This article cites 60 articles, 36 of which you can access for free at: http://www.jimmunol.org/content/164/11/5850.full#ref-list-1 Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision by guest on September 25, 2021 • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2000 by The American Association of Immunologists All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. Soluble NSF Attachment Protein Receptors (SNAREs) in RBL-2H3 Mast Cells: Functional Role of Syntaxin 4 in Exocytosis and Identification of a Vesicle-Associated Membrane Protein 8-Containing Secretory Compartment1 Fabienne Paumet,* Joe¨lle Le Mao,* Sophie Martin,* Thierry Galli,† Bernard David,* Ulrich Blank,* and Miche`le Roa2* Mast cells upon stimulation through high affinity IgE receptors massively release inflammatory mediators by the fusion of spe- cialized secretory granules (related to lysosomes) with the plasma membrane. -
Identification of Caveolin and Caveolin-Related Proteins in the Brain
The Journal of Neuroscience, December 15, 1997, 17(24):9520–9535 Identification of Caveolin and Caveolin-Related Proteins in the Brain Patricia L. Cameron, Johnna W. Ruffin, Roni Bollag, Howard Rasmussen, and Richard S. Cameron Institute of Molecular Medicine and Genetics, Medical College of Georgia, Augusta, Georgia 30912-3175 Caveolae are 50–100 nm, nonclathrin-coated, flask-shaped brane. Immunoblot analyses demonstrate that detergent- plasma membrane microdomains that have been identified in insoluble complexes isolated from astrocytes are composed of most mammalian cell types, except lymphocytes and neurons. caveolin-1a, an identification verified by Northern blot analyses To date, multiple functions have been ascribed to caveolae, and by the cloning of a cDNA using reverse transcriptase-PCR including the compartmentalization of lipid and protein compo- amplification from total astrocyte RNA. Using a full-length nents that function in transmembrane signaling events, biosyn- caveolin-1 probe, Northern blot analyses suggest that the ex- thetic transport functions, endocytosis, potocytosis, and trans- pression of caveolin-1 may be regulated during brain develop- cytosis. Caveolin, a 21–24 kDa integral membrane protein, is ment. Immunoblot analyses of detergent-insoluble complexes the principal structural component of caveolae. We have initi- isolated from cerebral cortex and cerebellum identify two im- ated studies to examine the relationship of detergent-insoluble munoreactive polypeptides with apparent molecular weight and complexes identified -
Internalization of Lectins in Neuronal Gerl
INTERNALIZATION OF LECTINS IN NEURONAL GERL NICHOLAS K. GONATAS, SEUNG U. KIM, ANNA STIEBER, and STRATIS AVRAMEAS From the Division of Neuropathology, Department of Pathology, University of PennsylvaniaSchool of Medicine, Philadelphia, Pennsylvania 19174, and the Laboratory of Immunocytochemistry,Pasteur Institute, Paris, France ABSTRACT Conjugates of ricin agglutinin and phytohemagglutinin with horseradish peroxi- dase (HRP) were used for a cytochemical study of internalization of their plasma membrane "receptors" in cultured isolated mouse dorsal root ganglion neurons. Labeling of cells with lectin-HRP was done at 4~ and internalization was performed at 37~ in a culture medium free of lectin-HRP. 15-30 rain after incubation at 37~ lectin-HRP-receptor complexes were seen in vesicles or tubules located near the plasma membrane. After 1-3 h at 37~ lectin-HRP- receptor complexes accumulated in vesicles and tubules corresponding to acid phosphatase-rich vesicles and tubules (GERL) at the trans aspect of the Golgi apparatus. A few coated vesicles and probably some dense bodies contained HRP after 3-6 h of incubation at 37~ Soluble HRP was not endocytosed under the conditions of this experiment or when it was present in the incubation medium at 37~ Internalization of lectin-HRP-receptor conjugates was decreased or in- hibited by mitochondrial respiration inhibitors but not by cytochalasin B or colchicine. These studies indicate that lectin-labeled plasma membrane moieties of neurons are endocytosed primarily in elements of GERL. Considerable information concerning the mobility tors" for ricin (Ric) and phytohemagglutinin and distribution of plasma membrane proteins has (PHA) labeled with horseradish peroxidase been gained with the use of various ligands. -
Endocytosis of Viruses and Bacteria
Downloaded from http://cshperspectives.cshlp.org/ on September 29, 2021 - Published by Cold Spring Harbor Laboratory Press Endocytosis of Viruses and Bacteria Pascale Cossart1 and Ari Helenius2 1Institut Pasteur, Unite´ des Interactions Bacte´ries-Cellules, Paris F-75015, France; INSERM U604, Paris F-75015, France; and INRA, USC2020, Paris F-75015, France 2Institute of Biochemistry, ETH Zurich, 8093 Zurich, Switzerland Correspondence: [email protected]; [email protected] Of the many pathogens that infect humans and animals, a large number use cells of the host organism as protected sites for replication. To reach the relevant intracellular compartments, they take advantage of the endocytosis machinery and exploit the network of endocytic organelles for penetration into the cytosol or as sites of replication. In this review, we discuss the endocytic entry processes used by viruses and bacteria and compare the strategies used by these dissimilar classes of pathogens. any of the most widespread and devastat- valuable insights into fundamental aspects of Ming diseases in humans and livestock are cell biology. caused by viruses and bacteria that enter cells for Here, we focus on the mechanisms by which replication. Being obligate intracellular para- viral and bacterial pathogens exploit the endo- sites, viruses have no choice. They must trans- cytosis machinery for host cell entry and rep- port their genome to the cytosol or nucleus of lication. Among recent reviews on this topic, infected cells to multiply and generate progeny. dedicated uniquely to either mammalian vi- Bacteria and eukaryotic parasites do have other ruses or bacterial pathogens, we recommend options; most of them can replicate on their the following: Cossart and Sansonetti (2004); own. -
Transcriptional Recapitulation and Subversion Of
Open Access Research2007KaiseretVolume al. 8, Issue 7, Article R131 Transcriptional recapitulation and subversion of embryonic colon comment development by mouse colon tumor models and human colon cancer Sergio Kaiser¤*, Young-Kyu Park¤†, Jeffrey L Franklin†, Richard B Halberg‡, Ming Yu§, Walter J Jessen*, Johannes Freudenberg*, Xiaodi Chen‡, Kevin Haigis¶, Anil G Jegga*, Sue Kong*, Bhuvaneswari Sakthivel*, Huan Xu*, Timothy Reichling¥, Mohammad Azhar#, Gregory P Boivin**, reviews Reade B Roberts§, Anika C Bissahoyo§, Fausto Gonzales††, Greg C Bloom††, Steven Eschrich††, Scott L Carter‡‡, Jeremy E Aronow*, John Kleimeyer*, Michael Kleimeyer*, Vivek Ramaswamy*, Stephen H Settle†, Braden Boone†, Shawn Levy†, Jonathan M Graff§§, Thomas Doetschman#, Joanna Groden¥, William F Dove‡, David W Threadgill§, Timothy J Yeatman††, reports Robert J Coffey Jr† and Bruce J Aronow* Addresses: *Biomedical Informatics, Cincinnati Children's Hospital Medical Center, Cincinnati, OH 45229, USA. †Departments of Medicine, and Cell and Developmental Biology, Vanderbilt University and Department of Veterans Affairs Medical Center, Nashville, TN 37232, USA. ‡McArdle Laboratory for Cancer Research, University of Wisconsin, Madison, WI 53706, USA. §Department of Genetics and Lineberger Cancer Center, University of North Carolina, Chapel Hill, NC 27599, USA. ¶Molecular Pathology Unit and Center for Cancer Research, Massachusetts deposited research General Hospital, Charlestown, MA 02129, USA. ¥Division of Human Cancer Genetics, The Ohio State University College of Medicine, Columbus, Ohio 43210-2207, USA. #Institute for Collaborative BioResearch, University of Arizona, Tucson, AZ 85721-0036, USA. **University of Cincinnati, Department of Pathology and Laboratory Medicine, Cincinnati, OH 45267, USA. ††H Lee Moffitt Cancer Center and Research Institute, Tampa, FL 33612, USA. ‡‡Children's Hospital Informatics Program at the Harvard-MIT Division of Health Sciences and Technology (CHIP@HST), Harvard Medical School, Boston, Massachusetts 02115, USA. -
Review Caveolae: Where Incoming and Outgoing Messengers Meet Richard G
Proc. Natl. Acad. Sci. USA Vol. 90, pp. 10909-10913, December 1993 Review Caveolae: Where incoming and outgoing messengers meet Richard G. W. Anderson Department of Cell Biology and Neuroscience, University of Texas Southwestem Medical Center, Dallas, TX 75235 ABSTIRACT Plasmalemmal caveolae ing. At the same time, this information is This portable, membrane-bound com- were flrst identified as an endocytic com- used to construct several models that partment has been found to contain a partment In endothelial cells, where they illustrate the different ways that caveolae number of molecules that are known to appear to move molecules across the cell might function in both intracellular and participate in cell signaling. There are by transcytosis. More recently, they have intercellular communication. three classes of molecules: enzymes that been found to be sites where small mole- generate messengers from substrates in cules are concentrated and internalized by Caveolae the environment, high-affinity binding a process called potocytosis. A growing sites that concentrate chemical signals, body of biochemical and morphological Each caveola is a dynamic piece ofmem- and substrates that are enzymatically evidence indicates that a variety of mole- brane that is either open for receiving and converted into messengers. cules known to function directly or indi- releasing material or closed for process- GPI. Insulin was the first hormone rectly in signal transduction are enriched ing, storage, and delivery to the cell (11). suspected of using inositol phosphogly- in caveolae. This raises the possibility that The exact nature of the closed compart- can (IPG) or a molecule derived from IPG a third function for caveolae is to process ment is still unclear. -
Membrane Transport Quiz
Membrane Transport Quiz 1. Which of the following is an example of extracellular fluid? a. Cytosol b. Plasma c. Interstitial Fluid d. Both b and c 2. Which of the following correctly describes passive transport? a. the cell uses ATP in passive transport b. most pumps are examples of passive transport c. diffusion is an example of passive transport d. exocytosis is an example of passive transport 3. Simple diffusion occurs ______________. a. with transporters in the cell membrane b. directly across the cell membrane c. through exocytosis d. through endocytosis 4. Which of the following is an example of active transport? a. Filtration b. Osmosis c. Endocytosis d. Exocytosis e. Both c and d 5. Which type of active transport uses ATP directly? a. Primary Active Transport b. Secondary Active Transport c. Both a and b 6. Which of the following is an example of receptor mediated endocytosis? a. Phagocytosis b. Primary Active Transport c. Exocytosis d. ALL are For use with TCC iTunes University Membrane Transport Lecture. 1 Developed by: Martha Kutter 2009 for the Learning Commons at Tallahassee Community College. 7. A transporter that moves one type of particle in one direction is _______________. a. Uniporter b. Symporter c. Antiporter 8. A transporter the moves two different particles in two different directions is ________. a. Endocytosis b. Exocytosis c. Uniporter d. Symporter e. Antiporter 9. Which of the following is an example of a primary active transporter? a. Na+/Ca2+ transporter on cardiac contractile cells b. Na+ channels on neurons c. Na+/K+ ATPase on all cells d. -
Membrane Capacitance Recordings Resolve Dynamics and Complexity Of
www.nature.com/scientificreports OPEN Membrane capacitance recordings resolve dynamics and complexity of receptor-mediated endocytosis in Received: 22 October 2018 Accepted: 20 August 2019 Wnt signalling Published: xx xx xxxx Vera Bandmann1, Ann Schirin Mirsanaye1, Johanna Schäfer1, Gerhard Thiel1, Thomas Holstein2 & Melanie Mikosch-Wersching1,2 Receptor-mediated endocytosis is an essential process in signalling pathways for activation of intracellular signalling cascades. One example is the Wnt signalling pathway that seems to depend on endocytosis of the ligand-receptor complex for initiation of Wnt signal transduction. To date, the roles of diferent endocytic pathways in Wnt signalling, molecular players and the kinetics of the process remain unclear. Here, we monitored endocytosis in Wnt3a and Wnt5a-mediated signalling with membrane capacitance recordings of HEK293 cells. Our measurements revealed a swift and substantial increase in the number of endocytic vesicles. Extracellular Wnt ligands specifcally triggered endocytotic activity, which started immediately upon ligand binding and ceased within a period of ten minutes. By using specifc inhibitors, we were able to separate Wnt-induced endocytosis into two independent pathways. We demonstrate that canonical Wnt3a is taken up mainly by clathrin-independent endocytosis whereas noncanonical Wnt5a is exclusively regulated via clathrin-mediated endocytosis. Our fndings show that membrane capacitance recordings allow the resolution of complex cellular processes in plasma membrane signalling pathways in great detail. Wnt signalling is a highly-conserved signalling pathway with important functions in development, tissue-homeostasis, stem cell biology and many diseases, including cancer. Afer three decades of dedicated research we have come to understand many of the fundamental components of Wnt signalling pathways. -
EFFECT of PHAGOCYTOSIS on MEMBRANE TRANSPORT of NONELECTROLYTES* by MIN-FU TSAN, M.D., and RICHARD D. BERLIN, M.D.:~ (From the D
EFFECT OF PHAGOCYTOSIS ON MEMBRANE TRANSPORT OF NONELECTROLYTES* BY MIN-FU TSAN, M.D., AND RICHARD D. BERLIN, M.D.:~ (From the Department of Physiology, Harvard Medical School, Boston, Massachusetts 02115) (Received for publication 3 June 1971) Phagocytosis and carrier-mediated membrane transport are two distinct membrane functions by which substances are translocated across the plasma membrane. Yet, little is known about the distribution of these functions over the cell surface. During phagocytosis, a part of the plasma membrane is internalized (1, 2). This internalized membrane may include transport sites (carriers). On the other hand, transport sites may be distributed in such a way that different parts of the plasma membrane are involved in transport and phagocytosis. In this study, the activities of specific transport systems were determined before and after large portions of the surface membrane had been interiorized by phagocytosis of inert particles. Five separate transport systems characterized in this laboratory, whose activity can be measured with great sensitivity, have been examined: adenosine 1 and two adenine (3) transport systems in rabbit po]ymorphonuclear leukocytes; adenosine 2 and lysine (4) transport systems in alveolar macrophages. The results show that the rates of transport were un- affected in all systems, even after an estimated 35-50% of the membrane had been internalized. It was also shown that the constancy of transport did not depend on the introduction into the surface of new transport sites during phago- cytosis. The results indicate that the membrane is mosaic in character with geographically separate transport and phagocytic sites. Materials and Methods Animals.--New Zealand white rabbits of either sex, weighing between 2 and 4 kg each, were used. -
Exo-Endocytosis at Mossy Fiber Terminals: Toward Capacitance Measurements in Cells with Arbitrary Geometry
Exo-endocytosis at mossy fiber terminals: Toward capacitance measurements in cells with arbitrary geometry Christopher Kushmerick and Henrique von Gersdorff* The Vollum Institute, Oregon Health and Science University, 3181 SW Sam Jackson Park Road, Portland, OR 97239 xocytosis and endocytosis are real time as a decrease in membrane ments have been made on secretory ubiquitous cellular phenomena capacitance back to baseline resting lev- cells for which the compact isopotential necessary for diverse functions els (6–9). approximation seems, prima facie,tobe such as secretion, internal sig- Most measurements obtained to date justified, including adrenal chromaffin Enaling, protein traffic, and motility. have relied on one of two general tech- cells (10), mast cells (11), and neuroen- Many different techniques have been niques to relate membrane current to docrine cells (12), which secrete via developed to assay exocytosis and endo- capacitance (6, 9). Time-domain meth- large dense-core vesicles. In addition, cytosis, but to date only electrical mea- ods use the amplitude and time course small clear-core synaptic vesicle fusion surements of plasma membrane capaci- of membrane current relaxations after and membrane retrieval have been mea- tance have had the time resolution step changes in electrical potential to sured from retinal bipolar cell terminals necessary to capture both the fusion and determine cell membrane parameters. (2, 3, 13), hair cells (4, 5), and photore- reuptake of small clear-core vesicle ceptors (14). However, these sensory membrane during fast neurotransmis- neurons contain nonconventional rib- sion. In this issue of PNAS, Hallermann bon-type active zones (3, 13, 15). et al. (1) present capacitance measure- These are the first Recently, attempts have been made to ments from hippocampal mossy fiber measure exocytosis in cells with complex nerve terminals during stimulated exocy- membrane capacitance geometry and multiple electrical com- tosis. -
Novel Targets of Apparently Idiopathic Male Infertility
International Journal of Molecular Sciences Review Molecular Biology of Spermatogenesis: Novel Targets of Apparently Idiopathic Male Infertility Rossella Cannarella * , Rosita A. Condorelli , Laura M. Mongioì, Sandro La Vignera * and Aldo E. Calogero Department of Clinical and Experimental Medicine, University of Catania, 95123 Catania, Italy; [email protected] (R.A.C.); [email protected] (L.M.M.); [email protected] (A.E.C.) * Correspondence: [email protected] (R.C.); [email protected] (S.L.V.) Received: 8 February 2020; Accepted: 2 March 2020; Published: 3 March 2020 Abstract: Male infertility affects half of infertile couples and, currently, a relevant percentage of cases of male infertility is considered as idiopathic. Although the male contribution to human fertilization has traditionally been restricted to sperm DNA, current evidence suggest that a relevant number of sperm transcripts and proteins are involved in acrosome reactions, sperm-oocyte fusion and, once released into the oocyte, embryo growth and development. The aim of this review is to provide updated and comprehensive insight into the molecular biology of spermatogenesis, including evidence on spermatogenetic failure and underlining the role of the sperm-carried molecular factors involved in oocyte fertilization and embryo growth. This represents the first step in the identification of new possible diagnostic and, possibly, therapeutic markers in the field of apparently idiopathic male infertility. Keywords: spermatogenetic failure; embryo growth; male infertility; spermatogenesis; recurrent pregnancy loss; sperm proteome; DNA fragmentation; sperm transcriptome 1. Introduction Infertility is a widespread condition in industrialized countries, affecting up to 15% of couples of childbearing age [1]. It is defined as the inability to achieve conception after 1–2 years of unprotected sexual intercourse [2].