A Negative Covariation Between Toxoplasmosis and Covid-19 With
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Bacterial Exposure and Immune Homeostasis: A
BACTERIAL EXPOSURE AND IMMUNE HOMEOSTASIS: A MECHANISTIC VIEW OF THE HYGIENE HYPOTHESIS By JENNY LYNN JOHNSON Submitted in fulfillment of the requirements for the Degree of Doctor of Philosophy Thesis Advisor: Dr. Brian A. Cobb, Ph.D. Department of Pathology CASE WESTERN RESERVE UNIVERSITY May 2015 CASE WESTERN RESERVE UNIVERSITY SCHOOL OF GRADUATE STUDIES We hereby approve the dissertation of Jenny Lynn Johnson Candidate for the degree of Doctor of Philosophy* Committee Chair Eric Pearlman Committee Member George Dubyak Committee Member Kristie Ross Committee Member Brian Cobb Committee Member Clive Hamlin Date of Defense March 16, 2015 *We also certify that written approval has been obtained for any proprietary material contained therein 2 Dedication I would like to dedicate this work to those who have supported me through the six years I have spent at CWRU, and in particular my parents, Mark and Sharon Johnson, and my cousins, Janice, David and Henry Graves. 3 Table of Contents List of Tables .................................................................................................................................... 7 List of Figures ................................................................................................................................... 8 Acknowledgements........................................................................................................................ 10 List of Abbreviations ..................................................................................................................... -
Electronic Case Report Form (Ecrf)
BMJ Publishing Group Limited (BMJ) disclaims all liability and responsibility arising from any reliance Supplemental material placed on this supplemental material which has been supplied by the author(s) BMJ Open Supplementary Material 3 Electronic case report form (eCRF) Study: Validation and optimization of the utility of routine data for improving the quality of sepsis management in hospitals (Validierung und Optimierung der Nutzbarkeit von Routinedaten zur Qualitätsverbesserung des Sepsis-Managements im Krankenhaus) Study acronym: OPTIMISE Case-ID: |_________________________________| Explanations: - italic text: Gives explanation, is not presented in the eCRF - blue text: multiple answers possible - italic red text: condition for presentation of item or query rule 1 Schwarzkopf D, et al. BMJ Open 2020; 10:e035763. doi: 10.1136/bmjopen-2019-035763 BMJ Publishing Group Limited (BMJ) disclaims all liability and responsibility arising from any reliance Supplemental material placed on this supplemental material which has been supplied by the author(s) BMJ Open Supplementary Material 3 A. Identification of patients with sepsis 1000 random cases per study centre need to be documented by trained study physicians 0. Admission and discharge dates a. Where several stays 0 no merged to one case for billing 1 yes reasons? If a = yes, ____ how many stays/cases have Query rule: N >= 2 been merged? b. Admission and discharge Admission date: |__|__|____ Discharge date: |__|__|____ dates Admission date: |__|__|____ Discharge date: |__|__|____ Admission date: |__|__|____ Discharge date: |__|__|____ Admission date: |__|__|____ Discharge date: |__|__|____ Query rule: discharge date after admission date c. -
Complete Sections As Applicable
This form should be used for all taxonomic proposals. Please complete all those modules that are applicable (and then delete the unwanted sections). For guidance, see the notes written in blue and the separate document “Help with completing a taxonomic proposal” Please try to keep related proposals within a single document; you can copy the modules to create more than one genus within a new family, for example. MODULE 1: TITLE, AUTHORS, etc (to be completed by ICTV Code assigned: 2015.006aM officers) Short title: Implementation of taxon-wide non-Latinized binomial species names in the family Rhabdoviridae (e.g. 6 new species in the genus Zetavirus) Modules attached 1 2 3 4 5 (modules 1 and 10 are required) 6 7 8 9 10 Author(s): ICTV Rhabdoviridae Study Group: Walker, Peter Chair Australia [email protected] Blasdell, Kim Member Australia [email protected] Calisher, Charlie H. Member USA [email protected] Dietzgen, Ralf G. Member Australia [email protected] Kondo, Hideki Member Japan [email protected] Kurath, Gael Member USA [email protected] Longdon, Ben Member UK [email protected] Stone, David Member UK [email protected] Tesh, Robert B. Member USA [email protected] Tordo, Noël Member France [email protected] Vasilakis, Nikos Member USA [email protected] Whitfield, Anna Member USA [email protected] and Kuhn, Jens H., [email protected] Corresponding author with e-mail address: Walker, Peter (ICTV Rhabdoviridae Study Group Chair), [email protected] List the ICTV study group(s) that have seen this proposal: A list of study groups and contacts is provided at http://www.ictvonline.org/subcommittees.asp . -
Commission Directive (Eu)
L 279/54 EN Offi cial Jour nal of the European Union 31.10.2019 COMMISSION DIRECTIVE (EU) 2019/1833 of 24 October 2019 amending Annexes I, III, V and VI to Directive 2000/54/EC of the European Parliament and of the Council as regards purely technical adjustments THE EUROPEAN COMMISSION, Having regard to the Treaty on the Functioning of the European Union, Having regard to Directive 2000/54/EC of the European Parliament and of the Council of 18 September 2000 on the protection of workers from risks related to exposure to biological agents at work (1), and in particular Article 19 thereof, Whereas: (1) Principle 10 of the European Pillar of Social Rights (2), proclaimed at Gothenburg on 17 November 2017, provides that every worker has the right to a healthy, safe and well-adapted working environment. The workers’ right to a high level of protection of their health and safety at work and to a working environment that is adapted to their professional needs and that enables them to prolong their participation in the labour market includes protection from exposure to biological agents at work. (2) The implementation of the directives related to the health and safety of workers at work, including Directive 2000/54/EC, was the subject of an ex-post evaluation, referred to as a REFIT evaluation. The evaluation looked at the directives’ relevance, at research and at new scientific knowledge in the various fields concerned. The REFIT evaluation, referred to in the Commission Staff Working Document (3), concludes, among other things, that the classified list of biological agents in Annex III to Directive 2000/54/EC needs to be amended in light of scientific and technical progress and that consistency with other relevant directives should be enhanced. -
“The Cellular Context of Rabies Virus Replication – Cell Culture Adaptation, Intra-Neuronal Virus Transport and Development of Host Gene Targeting Vectors”
“The Cellular Context of Rabies Virus Replication – Cell Culture Adaptation, Intra-Neuronal Virus Transport and Development of Host Gene Targeting Vectors” I n a u g u r a l d i s s e r t a t i o n zur Erlangung des akademischen Grades eines Doktors der Naturwissenschaften (Dr. rer. nat.) der Mathematisch-Naturwissenschaftlichen Fakultät der Ernst-Moritz-Arndt-Universität Greifswald vorgelegt von Sabine Nemitz geboren am 14.02.1989 in Rathenow Greifswald, den 20.07.2018 1 Dekan: Prof. Dr. Werner Weitschies 1. Gutachter : PD Dr. Stefan Finke 2. Gutachter: Prof. Dr. Karl-Klaus Conzelmann Tag der Promotion: 05.12.2018 2 3 I. Table of Content I. Table of Content 4 II. List of Abbreviations 7 III. Publications 10 1. SUMMARY 11 2. INTRODUCTION 15 2.1. Classification 16 2.2. Transmission 18 2.3. RABV virion structure and genome organization 19 2.4. RABV proteins 21 2.5. Life cycle 26 2.6. Neuronal transport of RABV particles 28 2.7. Fixed and non-fixed RABV 30 2.8. RABV as vector and research tool 31 2.8.1. Gene regulation via post-transcriptional silencing: RNAi 32 2.8.2. Cytoplasmically replicating RNA viruses as vectors for shRNA synthesis 34 3. AIMS OF THE STUDY 35 4. MATERIAL 36 4.1. Technical equipment 36 4.2. Chemicals 36 4.3. Antibiotics 36 4.4. Standard buffers 37 4.5. Marker 38 4.6. Kits 38 4.7. Cell lines 38 4.8. Cell culture media 39 4.9. Bacteria 41 4.10. Viruses 41 4.11. -
COVID-19 Puts 'Hygiene Hypothesis' to Test 2 November 2020
COVID-19 puts 'hygiene hypothesis' to test 2 November 2020 That might seem to be a blow for the hygiene hypothesis, which holds that as the incidence of infections decreases in developed and developing countries there is a corresponding rise in allergies and autoimmune diseases. However, the study hastens to warn against pursuing weak hygiene as a strategy in dealing with COVID-19 or other diseases. "Although we provide a possible explanation based on sanitation practices on the CFR (death rate) differences among economically stronger and weaker countries, this should not be inferred as our A town pool in Bihar, which is used for bathing, laundry, advocating a move towards weaker hygiene and for other domestic uses. The new study associates practices for handling future pandemics." low COVID-19 mortality rate with poor access to water, sanitation, and hygiene. Credit: Melissa So, what are the researchers pushing? They are Cooperman/IFPRI (https://www.flickr.com/photos/ifpri/34 looking at new possibilities for "immune training" 989936695/in/album-72157684454567045/) (CC BY-NC- and at microbiome therapies that may supplement SA 2.0, https://creativecommons.org/licenses/by-nc- conventional hygiene and sanitation practices. sa/2.0/) Earlier studies have also suggested that exposure to pathogens boost the immune system against infections, but this is still to stand up to close Indian researchers from the formidable Council of scientific scrutiny. Indeed, research in Sub-Saharan Scientific and Industrial Research (CSIR) and two Africa, again awaiting peer-review, associates other institutes have put to test the "hygiene higher COVID-19 death rates with poor access to hypothesis" with a study suggesting that areas with WASH, acronym for Water, Sanitation and high prevalence of infectious diseases are likely to Hygiene. -
Rhabdoviridae.Pdf
1 Rhabdoviridae Taxonomy Realm- Ribovira Kingdom- Orthornavirae Phylum- Negarnaviricota Subphylum-Haploviricotina Class- Monjiviricetes Order- Mononegaviriales Family- Rhabdoviridae Genus- Lyssavirus Genus-Ephemerovirus Rhabdoviridae: The family Derivation of names Rhabdoviridae: from rhabdos (Greek) meaning rod, referring to virion morphology. Member taxa Vertebrate host Lyssavirus Novirhabdovirus Perhabdovirus Sprivivirus Tupavirus Vertebrate host, arthropod vector Prepared by Dr. Vandana Gupta Page 1 2 Curiovirus Ephemerovirus Hapavirus Ledantevirus Sripuvirus Tibrovirus Vesiculovirus Invertebrate host Almendravirus Alphanemrhavirus Caligrhavirus Sigmavirus Plant host Cytorhabdovirus Dichorhavirus Nucleorhabdovirus Varicosavirus The family Rhabdoviridae includes 20 genera and 144 species of viruses with negative-sense, single-stranded RNA genomes of approximately 10–16 kb. Virions are typically enveloped with bullet-shaped or bacilliform morphology but non-enveloped filamentous virions have also been reported. The genomes are usually (but not always) single RNA molecules with partially complementary termini. Almost all rhabdovirus genomes have 5 genes encoding the structural proteins (N, P, M, G and L); however, many rhabdovirus genomes encode other proteins in additional genes or in alternative open reading frames (ORFs) within the structural protein genes. The family is ecologically diverse with members infecting plants or animals including mammals, birds, reptiles or fish. Rhabdoviruses are also detected in invertebrates, -
Vol. 23, No. 2, 2019
The Publication on AIDS Vaccine Research WWW.IAVIREPORT.ORG | VOLUME 23, ISSUE 2 | DECEMBER 2019 A new viral vaccine The history of A new efficacy trial of vector has broad vaccination: adapting the mosaic HIV vaccine potential to the times candidate FROM THE EDITOR “It was the best of times, it was the worst of times…” from Janssen Vaccines & Prevention, part of the Jans- So begins Charles Dickens’s famous historical novel A sen Pharmaceutical Companies of Johnson & Johnson, Tale of Two Cities, published in 1859. Dickens was together with a consortium of public partners, began describing the years leading up to the French their second, and largest, efficacy study (named Revolution, yet it is an oddly apt description of the Mosaico) of Janssen’s mosaic-based HIV vaccine candi- current state of the vaccine field. date (see page 16). This October, the first Ebola vaccine was approved by Based on this, one might think it was the best of times. the European Medicines Agency. This is by all accounts But amidst all this progress, global cases of measles are an important milestone in battling outbreaks of a lethal on the rise, a disease for which a highly effective vaccine infectious disease that most often affects people in devel- has been available for more than 50 years. Last year oping countries. This vaccine, known as Ervebo, was more than 140,000 people worldwide died of measles, rapidly developed in 2014 during the deadliest outbreak most of them children under five years old, and 100 mil- of Ebola in history. It is estimated to be 97.5% effective. -
B Directive 2000/54/Ec of the European
02000L0054 — EN — 24.06.2020 — 002.001 — 1 This text is meant purely as a documentation tool and has no legal effect. The Union's institutions do not assume any liability for its contents. The authentic versions of the relevant acts, including their preambles, are those published in the Official Journal of the European Union and available in EUR-Lex. Those official texts are directly accessible through the links embedded in this document ►B DIRECTIVE 2000/54/EC OF THE EUROPEAN PARLIAMENT AND OF THE COUNCIL of 18 September 2000 on the protection of workers from risks related to exposure to biological agents at work (seventh individual directive within the meaning of Article 16(1) of Directive 89/391/EEC) (OJ L 262, 17.10.2000, p. 21) Amended by: Official Journal No page date ►M1 Commission Directive (EU) 2019/1833 of 24 October 2019 L 279 54 31.10.2019 ►M2 Commission Directive (EU) 2020/739 of 3 June 2020 L 175 11 4.6.2020 02000L0054 — EN — 24.06.2020 — 002.001 — 2 ▼B DIRECTIVE 2000/54/EC OF THE EUROPEAN PARLIAMENT AND OF THE COUNCIL of 18 September 2000 on the protection of workers from risks related to exposure to biological agents at work (seventh individual directive within the meaning of Article 16(1) of Directive 89/391/EEC) CHAPTER I GENERAL PROVISIONS Article 1 Objective 1. This Directive has as its aim the protection of workers against risks to their health and safety, including the prevention of such risks, arising or likely to arise from exposure to biological agents at work. -
Taxonomy of the Order Mononegavirales: Update 2019
Archives of Virology (2019) 164:1967–1980 https://doi.org/10.1007/s00705-019-04247-4 VIROLOGY DIVISION NEWS Taxonomy of the order Mononegavirales: update 2019 Gaya K. Amarasinghe1 · María A. Ayllón2,3 · Yīmíng Bào4 · Christopher F. Basler5 · Sina Bavari6 · Kim R. Blasdell7 · Thomas Briese8 · Paul A. Brown9 · Alexander Bukreyev10 · Anne Balkema‑Buschmann11 · Ursula J. Buchholz12 · Camila Chabi‑Jesus13 · Kartik Chandran14 · Chiara Chiapponi15 · Ian Crozier16 · Rik L. de Swart17 · Ralf G. Dietzgen18 · Olga Dolnik19 · Jan F. Drexler20 · Ralf Dürrwald21 · William G. Dundon22 · W. Paul Duprex23 · John M. Dye6 · Andrew J. Easton24 · Anthony R. Fooks25 · Pierre B. H. Formenty26 · Ron A. M. Fouchier17 · Juliana Freitas‑Astúa27 · Anthony Grifths28 · Roger Hewson29 · Masayuki Horie31 · Timothy H. Hyndman32 · Dàohóng Jiāng33 · Elliott W. Kitajima34 · Gary P. Kobinger35 · Hideki Kondō36 · Gael Kurath37 · Ivan V. Kuzmin38 · Robert A. Lamb39,40 · Antonio Lavazza15 · Benhur Lee41 · Davide Lelli15 · Eric M. Leroy42 · Jiànróng Lǐ43 · Piet Maes44 · Shin‑Yi L. Marzano45 · Ana Moreno15 · Elke Mühlberger28 · Sergey V. Netesov46 · Norbert Nowotny47,48 · Are Nylund49 · Arnfnn L. Økland49 · Gustavo Palacios6 · Bernadett Pályi50 · Janusz T. Pawęska51 · Susan L. Payne52 · Alice Prosperi15 · Pedro Luis Ramos‑González13 · Bertus K. Rima53 · Paul Rota54 · Dennis Rubbenstroth55 · Mǎng Shī30 · Peter Simmonds56 · Sophie J. Smither57 · Enrica Sozzi15 · Kirsten Spann58 · Mark D. Stenglein59 · David M. Stone60 · Ayato Takada61 · Robert B. Tesh10 · Keizō Tomonaga62 · Noël Tordo63,64 · Jonathan S. Towner65 · Bernadette van den Hoogen17 · Nikos Vasilakis10 · Victoria Wahl66 · Peter J. Walker67 · Lin‑Fa Wang68 · Anna E. Whitfeld69 · John V. Williams23 · F. Murilo Zerbini70 · Tāo Zhāng4 · Yong‑Zhen Zhang71,72 · Jens H. Kuhn73 Published online: 14 May 2019 © This is a U.S. -
Unraveling the Hygiene Hypothesis of Helminthes And
Versini et al. BMC Medicine (2015) 13:81 DOI 10.1186/s12916-015-0306-7 OPINION Open Access Unraveling the Hygiene Hypothesis of helminthes and autoimmunity: origins, pathophysiology, and clinical applications Mathilde Versini1,2, Pierre-Yves Jeandel2, Tomer Bashi1, Giorgia Bizzaro1, Miri Blank1 and Yehuda Shoenfeld1,3* Abstract Background: The Hygiene Hypothesis (HH) attributes the dramatic increase in autoimmune and allergic diseases observed in recent decades in Western countries to the reduced exposure to diverse immunoregulatory infectious agents. This theory has since largely been supported by strong epidemiological and experimental evidence. Discussion: The analysis of these data along with the evolution of the Western world’s microbiome enable us to obtain greater insight into microorganisms involved in the HH, as well as their regulatory mechanisms on the immune system. Helminthes and their derivatives were shown to have a protective role. Helminthes’ broad immunomodulatory properties have already begun to be exploited in clinical trials of autoimmune diseases, including inflammatory bowel disease, multiple sclerosis, rheumatoid arthritis, and type-1 diabetes. Summary: In this review, we will dissect the microbial actors thought to be involved in the HH as well as their immunomodulatory mechanisms as emphasized by experimental studies, with a particular attention on parasites. Thereafter, we will review the early clinical trials using helminthes’ derivatives focusing on autoimmune diseases. Keywords: Allergy, Autoantibodies, Autoimmunity, Autoimmune disease, Helminthes, Hygiene hypothesis, Infection, Parasite, T-regulatory cells, Th1 Background number of people living with multiple sclerosis (MS) For several decades, Western countries have been facing worldwide has climbed from 2.1 million in 2008 to 2.3 an increasing incidence of allergic and autoimmune dis- million in 2013 [6]. -
Cleaning up the Hygiene Hypothesis NEWS FEATURE the Rise of Allergy and Autoimmune Diseases Is Due to Much More Than Rampant Cleanliness
NEWS FEATURE Cleaning up the hygiene hypothesis NEWS FEATURE The rise of allergy and autoimmune diseases is due to much more than rampant cleanliness. Is it time to throw out the hygiene hypothesis? Megan Scudellari, Science Writer Graph the data points, and the trend is unmistakable. “We know an awful lot now about why our immune Since the 1950s, rates of multiple sclerosis, Crohn’s system’s regulation is not in terribly good shape, and disease, type 1 diabetes, and asthma have soared by it’s got absolutely nothing to do with hygiene,” says 300% or more (1). Similar graphs depict concurrent Graham Rook, an emeritus professor of medical micro- spikes in hay fever and food allergies (2). biology at University College London. Today, epide- Mirroring this alarming surge in autoimmune and miological, experimental, and molecular evidence allergic disorders are simultaneous sharp declines in support a different hypothesis: Early exposure to a the incidence of mumps, measles, tuberculosis, and diverse range of “friendly” microbes—not infectious other infectious diseases in developed countries, pathogens—is necessary to train the human immune thanks to the advent of vaccines and antibiotics, and system to react appropriately to stimuli. to improved hygiene. In the 1990s, scientists began to If this new hypothesis is true, then cutting back on suspect that two trends were connected: Perhaps the personal hygiene will not have an impact on rates of reduction in infections was causing human immune chronic inflammatory and allergic disorders; it will, systems to malfunction in some way. however, increase infections. The hygiene hypothesis That “hygiene hypothesis,” first proposed in 1989 is a “dangerous misnomer which is misleading people (3), has become enshrined in popular culture: We’re away from finding the true causes of these rises in too clean for our own good.