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Taxonomy and Diversity of the Sponge Fauna from Walters Shoal, a Shallow Seamount in the Western Indian Ocean Region
Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region By Robyn Pauline Payne A thesis submitted in partial fulfilment of the requirements for the degree of Magister Scientiae in the Department of Biodiversity and Conservation Biology, University of the Western Cape. Supervisors: Dr Toufiek Samaai Prof. Mark J. Gibbons Dr Wayne K. Florence The financial assistance of the National Research Foundation (NRF) towards this research is hereby acknowledged. Opinions expressed and conclusions arrived at, are those of the author and are not necessarily to be attributed to the NRF. December 2015 Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region Robyn Pauline Payne Keywords Indian Ocean Seamount Walters Shoal Sponges Taxonomy Systematics Diversity Biogeography ii Abstract Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region R. P. Payne MSc Thesis, Department of Biodiversity and Conservation Biology, University of the Western Cape. Seamounts are poorly understood ubiquitous undersea features, with less than 4% sampled for scientific purposes globally. Consequently, the fauna associated with seamounts in the Indian Ocean remains largely unknown, with less than 300 species recorded. One such feature within this region is Walters Shoal, a shallow seamount located on the South Madagascar Ridge, which is situated approximately 400 nautical miles south of Madagascar and 600 nautical miles east of South Africa. Even though it penetrates the euphotic zone (summit is 15 m below the sea surface) and is protected by the Southern Indian Ocean Deep- Sea Fishers Association, there is a paucity of biodiversity and oceanographic data. -
Appendix: Some Important Early Collections of West Indian Type Specimens, with Historical Notes
Appendix: Some important early collections of West Indian type specimens, with historical notes Duchassaing & Michelotti, 1864 between 1841 and 1864, we gain additional information concerning the sponge memoir, starting with the letter dated 8 May 1855. Jacob Gysbert Samuel van Breda A biography of Placide Duchassaing de Fonbressin was (1788-1867) was professor of botany in Franeker (Hol published by his friend Sagot (1873). Although an aristo land), of botany and zoology in Gent (Belgium), and crat by birth, as we learn from Michelotti's last extant then of zoology and geology in Leyden. Later he went to letter to van Breda, Duchassaing did not add de Fon Haarlem, where he was secretary of the Hollandsche bressin to his name until 1864. Duchassaing was born Maatschappij der Wetenschappen, curator of its cabinet around 1819 on Guadeloupe, in a French-Creole family of natural history, and director of Teyler's Museum of of planters. He was sent to school in Paris, first to the minerals, fossils and physical instruments. Van Breda Lycee Louis-le-Grand, then to University. He finished traveled extensively in Europe collecting fossils, especial his studies in 1844 with a doctorate in medicine and two ly in Italy. Michelotti exchanged collections of fossils additional theses in geology and zoology. He then settled with him over a long period of time, and was received as on Guadeloupe as physician. Because of social unrest foreign member of the Hollandsche Maatschappij der after the freeing of native labor, he left Guadeloupe W etenschappen in 1842. The two chief papers of Miche around 1848, and visited several islands of the Antilles lotti on fossils were published by the Hollandsche Maat (notably Nevis, Sint Eustatius, St. -
A Soft Spot for Chemistry–Current Taxonomic and Evolutionary Implications of Sponge Secondary Metabolite Distribution
marine drugs Review A Soft Spot for Chemistry–Current Taxonomic and Evolutionary Implications of Sponge Secondary Metabolite Distribution Adrian Galitz 1 , Yoichi Nakao 2 , Peter J. Schupp 3,4 , Gert Wörheide 1,5,6 and Dirk Erpenbeck 1,5,* 1 Department of Earth and Environmental Sciences, Palaeontology & Geobiology, Ludwig-Maximilians-Universität München, 80333 Munich, Germany; [email protected] (A.G.); [email protected] (G.W.) 2 Graduate School of Advanced Science and Engineering, Waseda University, Shinjuku-ku, Tokyo 169-8555, Japan; [email protected] 3 Institute for Chemistry and Biology of the Marine Environment (ICBM), Carl-von-Ossietzky University Oldenburg, 26111 Wilhelmshaven, Germany; [email protected] 4 Helmholtz Institute for Functional Marine Biodiversity, University of Oldenburg (HIFMB), 26129 Oldenburg, Germany 5 GeoBio-Center, Ludwig-Maximilians-Universität München, 80333 Munich, Germany 6 SNSB-Bavarian State Collection of Palaeontology and Geology, 80333 Munich, Germany * Correspondence: [email protected] Abstract: Marine sponges are the most prolific marine sources for discovery of novel bioactive compounds. Sponge secondary metabolites are sought-after for their potential in pharmaceutical applications, and in the past, they were also used as taxonomic markers alongside the difficult and homoplasy-prone sponge morphology for species delineation (chemotaxonomy). The understanding Citation: Galitz, A.; Nakao, Y.; of phylogenetic distribution and distinctiveness of metabolites to sponge lineages is pivotal to reveal Schupp, P.J.; Wörheide, G.; pathways and evolution of compound production in sponges. This benefits the discovery rate and Erpenbeck, D. A Soft Spot for yield of bioprospecting for novel marine natural products by identifying lineages with high potential Chemistry–Current Taxonomic and Evolutionary Implications of Sponge of being new sources of valuable sponge compounds. -
Proposal for a Revised Classification of the Demospongiae (Porifera) Christine Morrow1 and Paco Cárdenas2,3*
Morrow and Cárdenas Frontiers in Zoology (2015) 12:7 DOI 10.1186/s12983-015-0099-8 DEBATE Open Access Proposal for a revised classification of the Demospongiae (Porifera) Christine Morrow1 and Paco Cárdenas2,3* Abstract Background: Demospongiae is the largest sponge class including 81% of all living sponges with nearly 7,000 species worldwide. Systema Porifera (2002) was the result of a large international collaboration to update the Demospongiae higher taxa classification, essentially based on morphological data. Since then, an increasing number of molecular phylogenetic studies have considerably shaken this taxonomic framework, with numerous polyphyletic groups revealed or confirmed and new clades discovered. And yet, despite a few taxonomical changes, the overall framework of the Systema Porifera classification still stands and is used as it is by the scientific community. This has led to a widening phylogeny/classification gap which creates biases and inconsistencies for the many end-users of this classification and ultimately impedes our understanding of today’s marine ecosystems and evolutionary processes. In an attempt to bridge this phylogeny/classification gap, we propose to officially revise the higher taxa Demospongiae classification. Discussion: We propose a revision of the Demospongiae higher taxa classification, essentially based on molecular data of the last ten years. We recommend the use of three subclasses: Verongimorpha, Keratosa and Heteroscleromorpha. We retain seven (Agelasida, Chondrosiida, Dendroceratida, Dictyoceratida, Haplosclerida, Poecilosclerida, Verongiida) of the 13 orders from Systema Porifera. We recommend the abandonment of five order names (Hadromerida, Halichondrida, Halisarcida, lithistids, Verticillitida) and resurrect or upgrade six order names (Axinellida, Merliida, Spongillida, Sphaerocladina, Suberitida, Tetractinellida). Finally, we create seven new orders (Bubarida, Desmacellida, Polymastiida, Scopalinida, Clionaida, Tethyida, Trachycladida). -
Carnivorous Sponges of the Atlantic and Arctic Oceans
&DUQLYRURXVVSRQJHVRIWKH$WODQWLFDQG $UFWLF2FHDQV 3K\ORJHQ\WD[RQRP\GLVWULEXWLRQDQGPLFURELDODVVRFLDWLRQVRIWKH &ODGRUKL]LGDH 'HPRVSRQJLDH3RHFLORVFOHULGD -RQ7KRPDVVHQ+HVWHWXQ Dissertation for the degree of philosophiae doctor (PhD) at the University of Bergen 'LVVHUWDWLRQGDWH1RYHPEHUWK © Copyright Jon Thomassen Hestetun The material in this publication is protected by copyright law. Year: 2016 Title: Carnivorous sponges of the Atlantic and Arctic Oceans Phylogeny, taxonomy, distribution and microbial associations of the Cladorhizidae (Demospongiae, Poecilosclerida) Author: Jon Thomassen Hestetun Print: AiT Bjerch AS / University of Bergen 3 Scientific environment This PhD project was financed through a four-year PhD position at the University of Bergen, and the study was conducted at the Department of Biology, Marine biodiversity research group, and the Centre of Excellence (SFF) Centre for Geobiology at the University of Bergen. The work was additionally funded by grants from the Norwegian Biodiversity Centre (grant to H.T. Rapp, project number 70184219), the Norwegian Academy of Science and Letters (grant to H.T. Rapp), the Research Council of Norway (through contract number 179560), the SponGES project through Horizon 2020, the European Union Framework Programme for Research and Innovation (grant agreement No 679849), the Meltzer Fund, and the Joint Fund for the Advancement of Biological Research at the University of Bergen. 4 5 Acknowledgements I have, initially through my master’s thesis and now during these four years of my PhD, in all been involved with carnivorous sponges for some six years. Trying to look back and somehow summarizing my experience with this work a certain realization springs to mind: It took some time before I understood my luck. My first in-depth exposure to sponges was in undergraduate zoology, and I especially remember watching “The Shape of Life”, an American PBS-produced documentary series focusing on the different animal phyla, with an enthusiastic Dr. -
Porifera) in Singapore and Description of a New Species of Forcepia (Poecilosclerida: Coelosphaeridae)
Contributions to Zoology, 81 (1) 55-71 (2012) Biodiversity of shallow-water sponges (Porifera) in Singapore and description of a new species of Forcepia (Poecilosclerida: Coelosphaeridae) Swee-Cheng Lim1, 3, Nicole J. de Voogd2, Koh-Siang Tan1 1 Tropical Marine Science Institute, National University of Singapore, 18 Kent Ridge Road, Singapore 119227, Singapore 2 Netherlands Centre for Biodiversity, Naturalis, PO Box 9517, 2300 RA Leiden, The Netherlands 3 E-mail: [email protected] Key words: intertidal, Southeast Asia, sponge assemblage, subtidal, tropical Abstract gia) patera (Hardwicke, 1822) was the first sponge de- scribed from Singapore in the 19th century. This was A surprisingly high number of shallow water sponge species followed by Leucosolenia flexilis (Haeckel, 1872), (197) were recorded from extensive sampling of natural inter- Coelocarteria singaporensis (Carter, 1883) (as Phloeo tidal and subtidal habitats in Singapore (Southeast Asia) from May 2003 to June 2010. This is in spite of a highly modified dictyon), and Callyspongia (Cladochalina) diffusa coastline that encompasses one of the world’s largest container Ridley (1884). Subsequently, Dragnewitsch (1906) re- ports as well as extensive oil refining and bunkering industries. corded 24 sponge species from Tanjong Pagar and Pu- A total of 99 intertidal species was recorded in this study. Of lau Brani in the Singapore Strait. A further six species these, 53 species were recorded exclusively from the intertidal of sponge were reported from Singapore in the 1900s, zone and only 45 species were found on both intertidal and subtidal habitats, suggesting that tropical intertidal and subtidal although two species, namely Cinachyrella globulosa sponge assemblages are different and distinct. -
Is There a Mediterranean Cold-Water Coral Sponge Fauna?
fmars-08-662899 June 9, 2021 Time: 17:47 # 1 ORIGINAL RESEARCH published: 15 June 2021 doi: 10.3389/fmars.2021.662899 Mediterranean Coral Provinces as a Sponge Diversity Reservoir: Is There a Mediterranean Cold-Water Coral Sponge Fauna? Andreu Santín1*, Jordi Grinyó1,2, Maria Jesús Uriz3, Claudio Lo Iacono1, Josep Maria Gili1 and Pere Puig1 1 Institut de Ciències del Mar (ICM-CSIC), Barcelona, Spain, 2 Department of Ocean Systems Sciences, NIOZ Royal Netherlands Institute for Sea Research and Utrecht University, Den Burg, Netherlands, 3 Centre d’Estudis Avançats de Blanes (CEAB-CSIC), Blanes, Spain Cold-water coral reefs (CWC) are known to be biodiversity hotspots, however, the sponge assemblages found to dwell within these habitats haven not been studied in depth to date in the Mediterranean Sea. The present article provides the first insight Edited by: on the associated sponge fauna of the recently discovered CWC communities on the Shirley A. Pomponi, Florida Atlantic University, Catalan Margin and, to a lesser extent, the Cabliers Coral Mound Province, while also United States reviewing the current knowledge of the sponge fauna dwelling in all the Mediterranean Reviewed by: CWC provinces. In regards to the studied areas, some rare species are cited for Sergi Taboada, Autonomous University of Madrid, the first time in the Mediterranean or redescribed, while two of them, Hamacantha Spain (Hamacantha) hortae sp. nov. and Spongosorites cabliersi sp. nov. are new to science. Giorgio Bavestrello, At a basin scale, Mediterranean CWC appear as poriferan biodiversity hotspots, yet University of Genoa, Italy current diversity values on each site rather represent a small fraction of its actual *Correspondence: Andreu Santín fauna. -
Receptor-Like Kinases from Arabidopsis Form a Monophyletic Gene Family Related to Animal Receptor Kinases
Receptor-like kinases from Arabidopsis form a monophyletic gene family related to animal receptor kinases Shin-Han Shiu and Anthony B. Bleecker* Department of Botany and Laboratory of Genetics, University of Wisconsin, Madison, WI 53706 Edited by Elliot M. Meyerowitz, California Institute of Technology, Pasadena, CA, and approved July 6, 2001 (received for review March 22, 2001) Plant receptor-like kinases (RLKs) are proteins with a predicted tionary relationship between the RTKs and RLKs within the signal sequence, single transmembrane region, and cytoplasmic recognized superfamily of related eukaryotic serine͞threonine͞ kinase domain. Receptor-like kinases belong to a large gene family tyrosine protein kinases (ePKs). An earlier phylogenetic analysis with at least 610 members that represent nearly 2.5% of Arabi- (22), using the six RLK sequences available at the time, indicated dopsis protein coding genes. We have categorized members of this a close relationship between plant sequences and animal RTKs, family into subfamilies based on both the identity of the extracel- although RLKs were placed in the ‘‘other kinase’’ category. A more lular domains and the phylogenetic relationships between the recent analysis using only plant sequences led to the conclusion that kinase domains of subfamily members. Surprisingly, this structur- the 18 RLKs sampled seemed to form a separate family among the ally defined group of genes is monophyletic with respect to kinase various eukaryotic kinases (23). The recent completion of the domains when compared with the other eukaryotic kinase families. Arabidopsis genome sequence (5) provides an opportunity for a In an extended analysis, animal receptor kinases, Raf kinases, plant more comprehensive analysis of the relationships between these RLKs, and animal receptor tyrosine kinases form a well supported classes of receptor kinases. -
Hexasterophoran Glass Sponges of New Zealand (Porifera: Hexactinellida: Hexasterophora): Orders Hexactinosida, Aulocalycoida and Lychniscosida
Hexactinellida: Hexasterophora): Orders Hexactinosida, Aulocalycoida and Lychniscosida Aulocalycoida and Lychniscosida Hexactinellida: Hexasterophora): Orders Hexactinosida, The Marine Fauna of New Zealand: Hexasterophoran Glass Sponges Zealand (Porifera: ISSN 1174–0043; 124 Henry M. Reiswig and Michelle Kelly The Marine Fauna of New Zealand: Hexasterophoran Glass Sponges of New Zealand (Porifera: Hexactinellida: Hexasterophora): Orders Hexactinosida, Aulocalycoida and Lychniscosida Henry M. Reiswig and Michelle Kelly NIWA Biodiversity Memoir 124 COVER PHOTO Two unidentified hexasterophoran glass sponge species, the first possibly Farrea onychohexastera n. sp. (frilly white honeycomb sponge in several bushy patches), and the second possibly Chonelasma lamella, but also possibly C. chathamense n. sp. (lower left white fan), attached to the habitat-forming coral Solenosmilia variabilis, dominant at 1078 m on the Graveyard seamount complex of the Chatham Rise (NIWA station TAN0905/29: 42.726° S, 179.897° W). Image captured by DTIS (Deep Towed Imaging System) onboard RV Tangaroa, courtesy of NIWA Seamounts Programme (SFAS103), Oceans2020 (LINZ, MFish) and Rob Stewart, NIWA, Wellington (Photo: NIWA). This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-nd/3.0/ NATIONAL INSTITUTE OF WATER AND ATMOSPHERIC RESEARCH (NIWA) The Marine Fauna of New Zealand: Hexasterophoran Glass Sponges of New Zealand (Porifera: Hexactinellida: -
An Integrative Systematic Framework Helps to Reconstruct Skeletal
Dohrmann et al. Frontiers in Zoology (2017) 14:18 DOI 10.1186/s12983-017-0191-3 RESEARCH Open Access An integrative systematic framework helps to reconstruct skeletal evolution of glass sponges (Porifera, Hexactinellida) Martin Dohrmann1*, Christopher Kelley2, Michelle Kelly3, Andrzej Pisera4, John N. A. Hooper5,6 and Henry M. Reiswig7,8 Abstract Background: Glass sponges (Class Hexactinellida) are important components of deep-sea ecosystems and are of interest from geological and materials science perspectives. The reconstruction of their phylogeny with molecular data has only recently begun and shows a better agreement with morphology-based systematics than is typical for other sponge groups, likely because of a greater number of informative morphological characters. However, inconsistencies remain that have far-reaching implications for hypotheses about the evolution of their major skeletal construction types (body plans). Furthermore, less than half of all described extant genera have been sampled for molecular systematics, and several taxa important for understanding skeletal evolution are still missing. Increased taxon sampling for molecular phylogenetics of this group is therefore urgently needed. However, due to their remote habitat and often poorly preserved museum material, sequencing all 126 currently recognized extant genera will be difficult to achieve. Utilizing morphological data to incorporate unsequenced taxa into an integrative systematics framework therefore holds great promise, but it is unclear which methodological approach best suits this task. Results: Here, we increase the taxon sampling of four previously established molecular markers (18S, 28S, and 16S ribosomal DNA, as well as cytochrome oxidase subunit I) by 12 genera, for the first time including representatives of the order Aulocalycoida and the type genus of Dactylocalycidae, taxa that are key to understanding hexactinellid body plan evolution. -
Classification of Plants
Classification of Plants Plants are classified in several different ways, and the further away from the garden we get, the more the name indicates a plant's relationship to other plants, and tells us about its place in the plant world rather than in the garden. Usually, only the Family, Genus and species are of concern to the gardener, but we sometimes include subspecies, variety or cultivar to identify a particular plant. Starting from the top, the highest category, plants have traditionally been classified as follows. Each group has the characteristics of the level above it, but has some distinguishing features. The further down the scale you go, the more minor the differences become, until you end up with a classification which applies to only one plant. Written convention indicated with underlined text KINGDOM Plant or animal DIVISION (PHYLLUM) CLASS Angiospermae (Angiosperms) Plants which produce flowers Gymnospermae (Gymnosperms) Plants which don't produce flowers SUBCLASS Dicotyledonae (Dicotyledons, Dicots) Plants with two seed leaves Monocotyledonae (Monocotyledons, Monocots) ‐ Plants with one seed leaf SUPERORDER A group of related Plant Families, classified in the order in which they are thought to have developed their differences from a common ancestor. There are six Superorders in the Dicotyledonae (Magnoliidae, Hamamelidae, Caryophyllidae, Dilleniidae, Rosidae, Asteridae), and four Superorders in the Monocotyledonae (Alismatidae, Commelinidae, Arecidae, Liliidae). The names of the Superorders end in ‐idae ORDER ‐ Each Superorder is further divided into several Orders. The names of the Orders end in ‐ales FAMILY ‐ Each Order is divided into Families. These are plants with many botanical features in common, and is the highest classification normally used. -
The Unique Skeleton of Siliceous Sponges (Porifera; Hexactinellida and Demospongiae) That Evolved first from the Urmetazoa During the Proterozoic: a Review
Biogeosciences, 4, 219–232, 2007 www.biogeosciences.net/4/219/2007/ Biogeosciences © Author(s) 2007. This work is licensed under a Creative Commons License. The unique skeleton of siliceous sponges (Porifera; Hexactinellida and Demospongiae) that evolved first from the Urmetazoa during the Proterozoic: a review W. E. G. Muller¨ 1, Jinhe Li2, H. C. Schroder¨ 1, Li Qiao3, and Xiaohong Wang4 1Institut fur¨ Physiologische Chemie, Abteilung Angewandte Molekularbiologie, Duesbergweg 6, 55099 Mainz, Germany 2Institute of Oceanology, Chinese Academy of Sciences, 7 Nanhai Road, 266071 Qingdao, P. R. China 3Department of Materials Science and Technology, Tsinghua University, 100084 Beijing, P. R. China 4National Research Center for Geoanalysis, 26 Baiwanzhuang Dajie, 100037 Beijing, P. R. China Received: 8 January 2007 – Published in Biogeosciences Discuss.: 6 February 2007 Revised: 10 April 2007 – Accepted: 20 April 2007 – Published: 3 May 2007 Abstract. Sponges (phylum Porifera) had been considered an axial filament which harbors the silicatein. After intracel- as an enigmatic phylum, prior to the analysis of their genetic lular formation of the first lamella around the channel and repertoire/tool kit. Already with the isolation of the first ad- the subsequent extracellular apposition of further lamellae hesion molecule, galectin, it became clear that the sequences the spicules are completed in a net formed of collagen fibers. of sponge cell surface receptors and of molecules forming the The data summarized here substantiate that with the find- intracellular signal transduction pathways triggered by them, ing of silicatein a new aera in the field of bio/inorganic chem- share high similarity with those identified in other metazoan istry started.