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Identifikasi Keanekaragaman Marchantiophyta Di Kawasan Air Terjun Parangkikis Pagerwojo Tulungagung
Jurnal Biologi dan Pembelajarannya, Vol 6 No 2, Oktober 2019. Pp: 17-21 e-ISSN: 2406 – 8659 IDENTIFIKASI KEANEKARAGAMAN MARCHANTIOPHYTA DI KAWASAN AIR TERJUN PARANGKIKIS PAGERWOJO TULUNGAGUNG Repik Febriansah, Eni Setyowati*), Arbaul Fauziah Jurusan Tadris Biologi, Fakultas Tarbiyah dan Ilmu Keguruan, IAIN Tulungagung Jalan Mayor Sujadi No. 46 Tulungagung *)Email: [email protected] Abstrak Penelitian ini bertujuan untuk mengkaji keanekaragaman jenis dari Divisi Marchantiophyta di Kawasan Air Terjun Parangkikis. Pengambilan sampel dilakukan pada bulan Desember 2018 hingga Maret 2019 dengan metode jelajah di sekitar Air Terjun Parangkikis Pagerwojo, Tulungagung. Identifikasi Marchantiophyta dilakukan di Laboratorium IPA Fakultas Tarbiyah dan Ilmu Keguruan IAIN Tulungagung. Hasil penelitian menunjukkan bahwa di kawasan Air Terjun Parangkikis terdapat dua kelas, yaitu Marchantiopsida dan Jungermanniopsida. Pada kelas Marchantiopsida hanya terdapat satu ordo, yaitu Marchantiales. Sedangkan pada kelas Jungermanniopsida meliputi tiga ordo yaitu Jungermanniales, Porellales, dan Pallviciniales. Kata kunci- Air Terjun Parangkikis, Keanekaragaman, Marchantiophyta PENDAHULUAN Tumbuhan lumut merupakan salah satu tumbuhan yang memiliki keanekaragaman cukup tinggi. Lumut merupakan kelompok tumbuhan yang berukuran kecil yang tempat tumbuhnya menempel pada berbagai substrat seperti pohon, serasah, kayu mati, kayu lapuk, tanah, maupun bebatuan. Lumut dapat tumbuh pada lingkungan lembab dengan penyinaran yang cukup [1]. Secara ekologis lumut berperan penting di dalam fungsi ekosistem. Tumbuhan lumut dapat digunakan sebagai bioindikator lingkungan yang menentukan lingkungan tersebut masih terjaga dengan baik atau sudah tereksploitasi [2]. Lumut hati dapat berfungsi sebagai bioakumulator logam berat [3] dan inhibitor pertumbuhan protozoa [4]. Air Terjun Parangkikis merupakan salah satu daerah pegunungan di Desa Gambiran Kecamatan Pagerwojo Kabupaten Tulungagung yang kaya dengan berbagai jenis lumut. Namun, penelitian tumbuhan lumut di kawasan tersebut belum banyak dilakukan. -
Characterization of Two Undescribed Mucoralean Species with Specific
Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 26 March 2018 doi:10.20944/preprints201803.0204.v1 1 Article 2 Characterization of Two Undescribed Mucoralean 3 Species with Specific Habitats in Korea 4 Seo Hee Lee, Thuong T. T. Nguyen and Hyang Burm Lee* 5 Division of Food Technology, Biotechnology and Agrochemistry, College of Agriculture and Life Sciences, 6 Chonnam National University, Gwangju 61186, Korea; [email protected] (S.H.L.); 7 [email protected] (T.T.T.N.) 8 * Correspondence: [email protected]; Tel.: +82-(0)62-530-2136 9 10 Abstract: The order Mucorales, the largest in number of species within the Mucoromycotina, 11 comprises typically fast-growing saprotrophic fungi. During a study of the fungal diversity of 12 undiscovered taxa in Korea, two mucoralean strains, CNUFC-GWD3-9 and CNUFC-EGF1-4, were 13 isolated from specific habitats including freshwater and fecal samples, respectively, in Korea. The 14 strains were analyzed both for morphology and phylogeny based on the internal transcribed 15 spacer (ITS) and large subunit (LSU) of 28S ribosomal DNA regions. On the basis of their 16 morphological characteristics and sequence analyses, isolates CNUFC-GWD3-9 and CNUFC- 17 EGF1-4 were confirmed to be Gilbertella persicaria and Pilobolus crystallinus, respectively.To the 18 best of our knowledge, there are no published literature records of these two genera in Korea. 19 Keywords: Gilbertella persicaria; Pilobolus crystallinus; mucoralean fungi; phylogeny; morphology; 20 undiscovered taxa 21 22 1. Introduction 23 Previously, taxa of the former phylum Zygomycota were distributed among the phylum 24 Glomeromycota and four subphyla incertae sedis, including Mucoromycotina, Kickxellomycotina, 25 Zoopagomycotina, and Entomophthoromycotina [1]. -
Seed Plant Models
Review Tansley insight Why we need more non-seed plant models Author for correspondence: Stefan A. Rensing1,2 Stefan A. Rensing 1 2 Tel: +49 6421 28 21940 Faculty of Biology, University of Marburg, Karl-von-Frisch-Str. 8, 35043 Marburg, Germany; BIOSS Biological Signalling Studies, Email: stefan.rensing@biologie. University of Freiburg, Sch€anzlestraße 18, 79104 Freiburg, Germany uni-marburg.de Received: 30 October 2016 Accepted: 18 December 2016 Contents Summary 1 V. What do we need? 4 I. Introduction 1 VI. Conclusions 5 II. Evo-devo: inference of how plants evolved 2 Acknowledgements 5 III. We need more diversity 2 References 5 IV. Genomes are necessary, but not sufficient 3 Summary New Phytologist (2017) Out of a hundred sequenced and published land plant genomes, four are not of flowering plants. doi: 10.1111/nph.14464 This severely skewed taxonomic sampling hinders our comprehension of land plant evolution at large. Moreover, most genetically accessible model species are flowering plants as well. If we are Key words: Charophyta, evolution, fern, to gain a deeper understanding of how plants evolved and still evolve, and which of their hornwort, liverwort, moss, Streptophyta. developmental patterns are ancestral or derived, we need to study a more diverse set of plants. Here, I thus argue that we need to sequence genomes of so far neglected lineages, and that we need to develop more non-seed plant model species. revealed much, the exact branching order and evolution of the I. Introduction nonbilaterian lineages is still disputed (Lanna, 2015). Research on animals has for a long time relied on a number of The first (small) plant genome to be sequenced was of THE traditional model organisms, such as mouse, fruit fly, zebrafish or model plant, the weed Arabidopsis thaliana (c. -
Supplementary Table S2: New Taxonomic Assignment of Sequences of Basal Fungal Lineages
Supplementary Table S2: New taxonomic assignment of sequences of basal fungal lineages. Fungal sequences were subjected to BLAST-N analysis and checked for their taxonomic placement in the eukaryotic guide-tree of the SILVA release 111. Sequences were classified depending on combined results from the methods mentioned above as well as literature searches. Accession Name New classification Clustering of the sequence in the Best BLAST-N hit number based on combined results eukaryotic guide tree of SILVA Name Accession number E.value Identity AB191431 Uncultured fungus Chytridiomycota Chytridiomycota Basidiobolus haptosporus AF113413.1 0.0 91 AB191432 Unculltured eukaryote Blastocladiomycota Blastocladiomycota Rhizophlyctis rosea NG_017175.1 0.0 91 AB252775 Uncultured eukaryote Chytridiomycota Chytridiomycota Blastocladiales sp. EF565163.1 0.0 91 AB252776 Uncultured eukaryote Fungi Nucletmycea_Fonticula Rhizophydium sp. AF164270.2 0.0 87 AB252777 Uncultured eukaryote Chytridiomycota Chytridiomycota Basidiobolus haptosporus AF113413.1 0.0 91 AB275063 Uncultured fungus Chytridiomycota Chytridiomycota Catenomyces sp. AY635830.1 0.0 90 AB275064 Uncultured fungus Chytridiomycota Chytridiomycota Endogone lactiflua DQ536471.1 0.0 91 AB433328 Nuclearia thermophila Nuclearia Nucletmycea_Nuclearia Nuclearia thermophila AB433328.1 0.0 100 AB468592 Uncultured fungus Basal clone group I Chytridiomycota Physoderma dulichii DQ536472.1 0.0 90 AB468593 Uncultured fungus Basal clone group I Chytridiomycota Physoderma dulichii DQ536472.1 0.0 91 AB468594 Uncultured -
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African countries and neighbouring islands covered by the Synopsis. S T R E L I T Z I A 23 Synopsis of the Lycopodiophyta and Pteridophyta of Africa, Madagascar and neighbouring islands by J.P. Roux Pretoria 2009 S T R E L I T Z I A This series has replaced Memoirs of the Botanical Survey of South Africa and Annals of the Kirstenbosch Botanic Gardens which SANBI inherited from its predecessor organisations. The plant genus Strelitzia occurs naturally in the eastern parts of southern Africa. It comprises three arborescent species, known as wild bananas, and two acaulescent species, known as crane flowers or bird-of-paradise flowers. The logo of the South African National Biodiversity Institute is based on the striking inflorescence of Strelitzia reginae, a native of the Eastern Cape and KwaZulu-Natal that has become a garden favourite worldwide. It sym- bolises the commitment of the Institute to champion the exploration, conservation, sustain- able use, appreciation and enjoyment of South Africa’s exceptionally rich biodiversity for all people. J.P. Roux South African National Biodiversity Institute, Compton Herbarium, Cape Town SCIENTIFIC EDITOR: Gerrit Germishuizen TECHNICAL EDITOR: Emsie du Plessis DESIGN & LAYOUT: Elizma Fouché COVER DESIGN: Elizma Fouché, incorporating Blechnum palmiforme on Gough Island PHOTOGRAPHS J.P. Roux Citing this publication ROUX, J.P. 2009. Synopsis of the Lycopodiophyta and Pteridophyta of Africa, Madagascar and neighbouring islands. Strelitzia 23. South African National Biodiversity Institute, Pretoria. ISBN: 978-1-919976-48-8 © Published by: South African National Biodiversity Institute. Obtainable from: SANBI Bookshop, Private Bag X101, Pretoria, 0001 South Africa. -
Multigene Evidence Reveals the Systematic Position of Pleurocladopsis Simulans (C
Polish Botanical Journal 58(2): 467–474, 2013 DOI: 10.2478/pbj-2013-0060 MULTIGENE EVIDENCE REVEALS THE SYSTEMATIC POSITION OF PLEUROCLADOPSIS SIMULANS (C. MASSAL.) R. M. SCHUST. WITHIN SCHISTOCHILA DUMORT., SCHISTOCHILACEAE XIAOLAN HE & YU SUN Abstract. The monotypic Pleurocladopsis, endemic to Chile, was established by Schuster in 1964 based on an earlier poorly known species Cephalozia (?) simulans C. Massal. The phylogenetic position of Pleurocladopsis simulans had been consid- ered uncertain until it was placed in the family Schistochilaceae on account of the gynoecial and sporophytic characters. It has been assumed that Pleurocladopsis represents the starting point of evolution in Schistochilaceae. In the present study, the phylogenetic position and taxonomic status of Pleurocladopsis simulans are inferred from phylogenetic analysis of three chloroplast DNA sequence data. The result suggests that the genus was established solely based on the autapomorphic char- acters, thus obscuring its actual phylogenetic relationship with Schistochila and that these characters are later derived rather than ancestral. The result also confirms that the gynoecial and sporophytic characters are important in taxonomy, but they may be not sufficient at the infrafamilial level and at other lower taxonomic levels. In accordance with the results of the present study, Pleurocladopsis is synonymised with Schistochila, and the new combination Schistochila simulans (C. Massal.) Xiao L. He & Yu Sun is made. Key words: autapomorphy, Chile, DNA sequence, endemics, liverwort, molecular phylogeny, morphology, Pleurocladopsis simulans, Schistochila, Schistochilaceae, systematics, taxonomy Xiaolan He & Yu Sun, Botanical Museum, Finnish Museum of Natural History, University of Helsinki, P.O. Box 7, FIN-00014 Helsinki, Finland; e-mail: [email protected] INTRODUCTION The genus Pleurocladopsis R. -
The Free Radical Scavenging Activities of Biochemical Compounds of Dicranum Scoparium and Porella Platyphylla
Aydın S. 2020. Anatolian Bryol……………………………………………………………..……………19 Anatolian Bryology http://dergipark.org.tr/tr/pub/anatolianbryology Anadolu Briyoloji Dergisi Research Article DOI: 10.26672/anatolianbryology.701466 e-ISSN:2458-8474 Online The free radical scavenging activities of biochemical compounds of Dicranum scoparium and Porella platyphylla Sevinç AYDIN1* 1Çemişgezek Vocational School, Munzur University, Tunceli, TURKEY Received: 10.03.2020 Revised: 28.03.2020 Accepted: 17.04.2020 Abstract The bryophytes studies carried out in our country are mainly for bryofloristic purposes and the studies on biochemical contents are very limited. Dicranum scoparium and Porella platyphylla taxa of bryophytes were used in the present study carried out to determine the free radical scavenging activities, fatty acid, and vitamin contents. In this study, it was aimed to underline the importance of bryophytes for scientific literature and to provide a basis for further studies on this subject. The data obtained in this study indicate that the DPPH radical scavenging effect of D. scoparium taxon is significantly higher than that of P. platyphylla taxon. It is known that there is a strong relationship between the phenolic compound content of methanol extracts of the plants and the DPPH radical scavenging efficiency. When the fatty acid contents were examined, it was observed that levels of all unsaturated fatty acids were higher in the P. platyphylla taxon than the D. scoparium taxon, except for α-Linolenic acid. When the vitamin contents of species were compared, it was determined that D-3, α -tocopherol, stigmasterol, betasterol amount was higher in Dicranum taxon. Keywords: DPPH, Fatty Acid, Vitamin, Dicranaceae, Porellaceae Dicranum scoparium ve Porella platyphylla taxonlarının biyokimyasal bileşiklerinin serbest radikal temizleme faaliyetleri Öz Ülkemizde briyofitler ile ilgili olan çalışmalar genellikle briyofloristik amaçlı olup serbest radikal temizleme aktiviteleri ve yağ asidi içerikleri gibi diğer amaçlı çalışmalar yok denecek kadar azdır. -
Comparative Transcriptome Analysis Suggests Convergent Evolution Of
Alejo-Jacuinde et al. BMC Plant Biology (2020) 20:468 https://doi.org/10.1186/s12870-020-02638-3 RESEARCH ARTICLE Open Access Comparative transcriptome analysis suggests convergent evolution of desiccation tolerance in Selaginella species Gerardo Alejo-Jacuinde1,2, Sandra Isabel González-Morales3, Araceli Oropeza-Aburto1, June Simpson2 and Luis Herrera-Estrella1,4* Abstract Background: Desiccation tolerant Selaginella species evolved to survive extreme environmental conditions. Studies to determine the mechanisms involved in the acquisition of desiccation tolerance (DT) have focused on only a few Selaginella species. Due to the large diversity in morphology and the wide range of responses to desiccation within the genus, the understanding of the molecular basis of DT in Selaginella species is still limited. Results: Here we present a reference transcriptome for the desiccation tolerant species S. sellowii and the desiccation sensitive species S. denticulata. The analysis also included transcriptome data for the well-studied S. lepidophylla (desiccation tolerant), in order to identify DT mechanisms that are independent of morphological adaptations. We used a comparative approach to discriminate between DT responses and the common water loss response in Selaginella species. Predicted proteomes show strong homology, but most of the desiccation responsive genes differ between species. Despite such differences, functional analysis revealed that tolerant species with different morphologies employ similar mechanisms to survive desiccation. Significant functions involved in DT and shared by both tolerant species included induction of antioxidant systems, amino acid and secondary metabolism, whereas species-specific responses included cell wall modification and carbohydrate metabolism. Conclusions: Reference transcriptomes generated in this work represent a valuable resource to study Selaginella biology and plant evolution in relation to DT. -
Introduction to Botany. Lecture 31
Questions and answers Kingdom Vegetabilia: plants Introduction to Botany. Lecture 31 Alexey Shipunov Minot State University November 16, 2011 Shipunov BIOL 154.31 Questions and answers Kingdom Vegetabilia: plants Outline 1 Questions and answers 2 Kingdom Vegetabilia: plants Bryophyta: mosses Shipunov BIOL 154.31 Questions and answers Kingdom Vegetabilia: plants Outline 1 Questions and answers 2 Kingdom Vegetabilia: plants Bryophyta: mosses Shipunov BIOL 154.31 2 Questions and answers Kingdom Vegetabilia: plants Previous final question: the answer 1 Arabidopsis thaliana (L.) Heynh 2 Citrus 3 Piperaceae Where is a genus name? Shipunov BIOL 154.31 Questions and answers Kingdom Vegetabilia: plants Previous final question: the answer 1 Arabidopsis thaliana (L.) Heynh 2 Citrus 3 Piperaceae Where is a genus name? 2 Shipunov BIOL 154.31 Questions and answers Kingdom Vegetabilia: plants Results of Exam 3 (statistical summary) Summary: Min. 1st Qu. Median Mean 3rd Qu. Max. NA’s 43.00 67.00 79.00 78.36 92.00 108.00 5.00 Grades: F D C B max 61 72 82 92 102 Shipunov BIOL 154.31 Questions and answers Kingdom Vegetabilia: plants Results of Exam 3 (the curve) Density estimation for Exam 3 (Biol 154) 61 92 (F) (B) Points Shipunov BIOL 154.31 Questions and answers Bryophyta: mosses Kingdom Vegetabilia: plants Kingdom Vegetabilia: plants Bryophyta: mosses Shipunov BIOL 154.31 Questions and answers Bryophyta: mosses Kingdom Vegetabilia: plants Three main phyla Bryophyta: gametophyte predominance Pteridophyta: sporophyte predominance, no seed Spermatophyta: -
11-122. 2000 11
FERN GAZ. 16(1, 2)11-122. 2000 11 CHECKLIST OF THE PTERIDOPHYTES OF TRINIDAD & TOBAGO Y. S. BAKSH-COMEAU The National Herbarium of Trinidad and Tobago. Department of Life Sciences, The University of the West Indies, St. Augustine, Trinidad, West Indies Key words: checklist, Trinidad and Tobago pteridophytes, types, habitat, distribution. ABSTRACT Three hundred and two species and eight varieties or subspecies in 27 families and 77 genera of ferns and fern allies are listed. Four new combinations and states are made, and one synonym lectotypified. A serious attempt has been made to establish types; selections of specimens studied are cited. INTRODUCTION Recent studies of ferns in Trinidad and Tobago (Baksh-Comeau, 1996, 1999) have combined a review of the pteridophyte collection at The National Herbarium of Trinidad & Tobago with field surveys undertaken to assess the community status of these plants on both islands. This checklist has been developed as an integral part of those studies, but it is also an essential prerequisite to ongoing research covering a reclassification of the vegetation of the islands and to the preparation of a comprehensive vascular plant flora. The herbarium count and field survey revealed 251 species confirmed by voucher specimens housed in Trinidad. Additional species have been attributed to Trinidad or Tobago in early publications for Trinidad and in Floras and monographs for neighbouring areas. The number of species now believed to be indigenous in these islands is 282. Cultivated species that have escaped, and introductions which have become naturalized number 20. Early reports include Grisebach (1859-64) who listed 106 species; Eaton (1878) approximately 78 of the 150 or so species eventually collected by August Fendler; Jenman (1887) had about 184 species; Anon (1889) listed 206 binomials including a few introduced taxa; Jenman (1898-1909), in an incomplete coverage of the fern flora, described 140 taxa of which 10 were new species; Hart (1908), including some cultivated plants, listed 283 binomials of pteridophytes. -
S41467-021-25308-W.Pdf
ARTICLE https://doi.org/10.1038/s41467-021-25308-w OPEN Phylogenomics of a new fungal phylum reveals multiple waves of reductive evolution across Holomycota ✉ ✉ Luis Javier Galindo 1 , Purificación López-García 1, Guifré Torruella1, Sergey Karpov2,3 & David Moreira 1 Compared to multicellular fungi and unicellular yeasts, unicellular fungi with free-living fla- gellated stages (zoospores) remain poorly known and their phylogenetic position is often 1234567890():,; unresolved. Recently, rRNA gene phylogenetic analyses of two atypical parasitic fungi with amoeboid zoospores and long kinetosomes, the sanchytrids Amoeboradix gromovi and San- chytrium tribonematis, showed that they formed a monophyletic group without close affinity with known fungal clades. Here, we sequence single-cell genomes for both species to assess their phylogenetic position and evolution. Phylogenomic analyses using different protein datasets and a comprehensive taxon sampling result in an almost fully-resolved fungal tree, with Chytridiomycota as sister to all other fungi, and sanchytrids forming a well-supported, fast-evolving clade sister to Blastocladiomycota. Comparative genomic analyses across fungi and their allies (Holomycota) reveal an atypically reduced metabolic repertoire for sanchy- trids. We infer three main independent flagellum losses from the distribution of over 60 flagellum-specific proteins across Holomycota. Based on sanchytrids’ phylogenetic position and unique traits, we propose the designation of a novel phylum, Sanchytriomycota. In addition, our results indicate that most of the hyphal morphogenesis gene repertoire of multicellular fungi had already evolved in early holomycotan lineages. 1 Ecologie Systématique Evolution, CNRS, Université Paris-Saclay, AgroParisTech, Orsay, France. 2 Zoological Institute, Russian Academy of Sciences, St. ✉ Petersburg, Russia. 3 St. -
North American H&A Names
A very tentative and preliminary list of North American liverworts and hornworts, doubtless containing errors and omissions, but forming a basis for updating the spreadsheet of recognized genera and numbers of species, November 2010. Liverworts Blasiales Blasiaceae Blasia L. Blasia pusilla L. Fossombroniales Calyculariaceae Calycularia Mitt. Calycularia crispula Mitt. Calycularia laxa Lindb. & Arnell Fossombroniaceae Fossombronia Raddi Fossombronia alaskana Steere & Inoue Fossombronia brasiliensis Steph. Fossombronia cristula Austin Fossombronia foveolata Lindb. Fossombronia hispidissima Steph. Fossombronia lamellata Steph. Fossombronia macounii Austin Fossombronia marshii J. R. Bray & Stotler Fossombronia pusilla (L.) Dumort. Fossombronia longiseta (Austin) Austin Note: Fossombronia longiseta was based on a mixture of material belonging to three different species of Fossombronia; Schuster (1992a p. 395) lectotypified F. longiseta with the specimen of Austin, Hepaticae Boreali-Americani 118 at H. An SEM of one spore from this specimen was previously published by Scott and Pike (1988 fig. 19) and it is clearly F. pusilla. It is not at all clear why Doyle and Stotler (2006) apply the name to F. hispidissima. Fossombronia texana Lindb. Fossombronia wondraczekii (Corda) Dumort. Fossombronia zygospora R.M. Schust. Petalophyllum Nees & Gottsche ex Lehm. Petalophyllum ralfsii (Wilson) Nees & Gottsche ex Lehm. Moerckiaceae Moerckia Gottsche Moerckia blyttii (Moerch) Brockm. Moerckia hibernica (Hook.) Gottsche Pallaviciniaceae Pallavicinia A. Gray, nom. cons. Pallavicinia lyellii (Hook.) Carruth. Pelliaceae Pellia Raddi, nom. cons. Pellia appalachiana R.M. Schust. (pro hybr.) Pellia endiviifolia (Dicks.) Dumort. Pellia endiviifolia (Dicks.) Dumort. ssp. alpicola R.M. Schust. Pellia endiviifolia (Dicks.) Dumort. ssp. endiviifolia Pellia epiphylla (L.) Corda Pellia megaspora R.M. Schust. Pellia neesiana (Gottsche) Limpr. Pellia neesiana (Gottsche) Limpr.