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Glossary - Cellbiology
1 Glossary - Cellbiology Blotting: (Blot Analysis) Widely used biochemical technique for detecting the presence of specific macromolecules (proteins, mRNAs, or DNA sequences) in a mixture. A sample first is separated on an agarose or polyacrylamide gel usually under denaturing conditions; the separated components are transferred (blotting) to a nitrocellulose sheet, which is exposed to a radiolabeled molecule that specifically binds to the macromolecule of interest, and then subjected to autoradiography. Northern B.: mRNAs are detected with a complementary DNA; Southern B.: DNA restriction fragments are detected with complementary nucleotide sequences; Western B.: Proteins are detected by specific antibodies. Cell: The fundamental unit of living organisms. Cells are bounded by a lipid-containing plasma membrane, containing the central nucleus, and the cytoplasm. Cells are generally capable of independent reproduction. More complex cells like Eukaryotes have various compartments (organelles) where special tasks essential for the survival of the cell take place. Cytoplasm: Viscous contents of a cell that are contained within the plasma membrane but, in eukaryotic cells, outside the nucleus. The part of the cytoplasm not contained in any organelle is called the Cytosol. Cytoskeleton: (Gk. ) Three dimensional network of fibrous elements, allowing precisely regulated movements of cell parts, transport organelles, and help to maintain a cell’s shape. • Actin filament: (Microfilaments) Ubiquitous eukaryotic cytoskeletal proteins (one end is attached to the cell-cortex) of two “twisted“ actin monomers; are important in the structural support and movement of cells. Each actin filament (F-actin) consists of two strands of globular subunits (G-Actin) wrapped around each other to form a polarized unit (high ionic cytoplasm lead to the formation of AF, whereas low ion-concentration disassembles AF). -
Nernst Equation in Electrochemistry the Nernst Equation Gives the Reduction Potential of a Half‐Cell in Equilibrium
Nernst equation In electrochemistry the Nernst equation gives the reduction potential of a half‐cell in equilibrium. In further cases, it can also be used to determine the emf (electromotive force) for a full electrochemical cell. (half‐cell reduction potential) (total cell potential) where Ered is the half‐cell reduction potential at a certain T o E red is the standard half‐cell reduction potential Ecell is the cell potential (electromotive force) o E cell is the standard cell potential at a certain T R is the universal gas constant: R = 8.314472(15) JK−1mol−1 T is the absolute temperature in Kelvin a is the chemical activity for the relevant species, where aRed is the reductant and aOx is the oxidant F is the Faraday constant; F = 9.64853399(24)×104 Cmol−1 z is the number of electrons transferred in the cell reaction or half‐reaction Q is the reaction quotient (e.g. molar concentrations, partial pressures …) As the system is considered not to have reached equilibrium, the reaction quotient Q is used instead of the equilibrium constant k. The electrochemical series is used to determine the electrochemical potential or the electrode potential of an electrochemical cell. These electrode potentials are measured relatively to the standard hydrogen electrode. A reduced member of a couple has a thermodynamic tendency to reduce the oxidized member of any couple that lies above it in the series. The standard hydrogen electrode is a redox electrode which forms the basis of the thermodynamic scale of these oxidation‐ reduction potentials. For a comparison with all other electrode reactions, standard electrode potential E0 of hydrogen is defined to be zero at all temperatures. -
Biopsychology 2012 – Sec 003 (Dr
Biopsychology 2012 – sec 003 (Dr. Campeau) Study Guide for First Midterm What are some fun facts about the human brain? - there are approximately 100 billion neurons in the brain; - each neuron makes between 1000 to 10000 connections with other neurons; - speed of action potentials varies from less than 1 mph and up to 100 mph. What is a neuron? A very specialized cell type whose function is to receive, process, and send information; these cells are found in the central nervous system (CNS – brain, spinal cord, retina) and the peripheral nervous system (PNS – the rest of the body). What is a nerve? They are axons of individual neurons in bundles or strands of many axons. What are the major parts of a neuron? - cell membrane: “skin” of the neuron; - cytoplasm: everything inside the skin; - nucleus: contains chromosomes (DNA); - ribosomes: generate proteins from mRNA; - mitochondria: energy “generator” of cells (produce ATP); - mitochondria: moves “stuff” inside the neuron (like a tow rope); - soma: cell body, excluding dendrites and axons; - dendrites and spines: part of the neuron usually receiving information from other neurons; - axons: part of the neuron that transmits information to other neurons; - myelin sheath: surrounds axons and provides electrical “insulation”; - nodes of Ranvier: small area on axons devoid of myelin sheath; - presynaptic terminal: area of neuron where neurotransmitter is stored and released by action potentials. What are the different neuron types according to function? 1. Sensory neurons: neurons specialized to “receive” information about the environment. 2. Motor neurons: neurons specialized to produce movement (contraction of muscles). 3. Interneurons or Intrinsic neurons: neurons, usually with short axons, that handle local information. -
Nernst Potentials and Membrane Potential Changes
UNDERSTANDING MEMBRANE POTENTIAL CHANGES IN TERMS OF NERNST POTENTIALS: For seeing how a change in conductance to ions affects the membrane potential, follow these steps: 1. Make a graph with membrane potential on the vertical axis (-100 to +55) and time on the horizontal axis. 2. Draw dashed lines indicating the standard Nernst potential (equilibrium potential) for each ion: Na+ = +55 mV, K+ = -90mV, Cl- = -65 mV. 3. Draw lines below the horizontal axis showing the increased conductance to individual ions. 4. Start plotting the membrane potential on the left. Most graphs will start at resting potential (-70 mV) 5. When current injection (Stim) is present, move the membrane potential upward to Firing threshold. 6. For the time during which membrane conductance to a particular ion increases, move the membrane potential toward the Nernst potential for that ion. 7. During the time when conductance to a particular ion decreases, move the membrane potential away from the Nernst potential of that ion, toward a position which averages the conductances of the other ions. 8. When conductances return to their original value, membrane potential will go to its starting value. +55mV ACTION POTENTIAL SYNAPTIC POTENTIALS 0mV Membrane potential Firing threshold Firing threshold -65mV -90mV Time Time Na+ K+ Conductances Stim CHANGES IN MEMBRANE POTENTIAL ALLOW NEURONS TO COMMUNICATE The membrane potential of a neuron can be measured with an intracellular electrode. This 1 provides a measurement of the voltage difference between the inside of the cell and the outside. When there is no external input, the membrane potential will usually remain at a value called the resting potential. -
Neurotransmitter Actions
Central University of South Bihar Panchanpur, Gaya, India E-Learning Resources Department of Biotechnology NB: These materials are taken/borrowed/modified/compiled from various resources like research articles and freely available internet websites, and are meant to be used solely for the teaching purpose in a public university, and for serving the needs of specified educational programmes. Dr. Jawaid Ahsan Assistant Professor Department of Biotechnology Central University of South Bihar (CUSB) Course Code: MSBTN2003E04 Course Name: Neuroscience Neurotransmitter Actions • Excitatory Action: – A neurotransmitter that puts a neuron closer to an action potential (facilitation) or causes an action potential • Inhibitory Action: – A neurotransmitter that moves a neuron further away from an action potential • Response of neuron: – Responds according to the sum of all the neurotransmitters received at one time Neurotransmitters • Acetylcholine • Monoamines – modified amino acids • Amino acids • Neuropeptides- short chains of amino acids • Depression: – Caused by the imbalances of neurotransmitters • Many drugs imitate neurotransmitters – Ex: Prozac, zoloft, alcohol, drugs, tobacco Release of Neurotransmitters • When an action potential reaches the end of an axon, Ca+ channels in the neuron open • Causes Ca+ to rush in – Cause the synaptic vesicles to fuse with the cell membrane – Release the neurotransmitters into the synaptic cleft • After binding, neurotransmitters will either: – Be destroyed in the synaptic cleft OR – Taken back in to surrounding neurons (reuptake) Excitable cells: Definition: Refers to the ability of some cells to be electrically excited resulting in the generation of action potentials. Neurons, muscle cells (skeletal, cardiac, and smooth), and some endocrine cells (e.g., insulin- releasing pancreatic β cells) are excitable cells. -
Electrical Activity of the Heart: Action Potential, Automaticity, and Conduction 1 & 2 Clive M
Electrical Activity of the Heart: Action Potential, Automaticity, and Conduction 1 & 2 Clive M. Baumgarten, Ph.D. OBJECTIVES: 1. Describe the basic characteristics of cardiac electrical activity and the spread of the action potential through the heart 2. Compare the characteristics of action potentials in different parts of the heart 3. Describe how serum K modulates resting potential 4. Describe the ionic basis for the cardiac action potential and changes in ion currents during each phase of the action potential 5. Identify differences in electrical activity across the tissues of the heart 6. Describe the basis for normal automaticity 7. Describe the basis for excitability 8. Describe the basis for conduction of the cardiac action potential 9. Describe how the responsiveness relationship and the Na+ channel cycle modulate cardiac electrical activity I. BASIC ELECTROPHYSIOLOGIC CHARACTERISTICS OF CARDIAC MUSCLE A. Electrical activity is myogenic, i.e., it originates in the heart. The heart is an electrical syncitium (i.e., behaves as if one cell). The action potential spreads from cell-to-cell initiating contraction. Cardiac electrical activity is modulated by the autonomic nervous system. B. Cardiac cells are electrically coupled by low resistance conducting pathways gap junctions located at the intercalated disc, at the ends of cells, and at nexus, points of side-to-side contact. The low resistance pathways (wide channels) are formed by connexins. Connexins permit the flow of current and the spread of the action potential from cell-to-cell. C. Action potentials are much longer in duration in cardiac muscle (up to 400 msec) than in nerve or skeletal muscle (~5 msec). -
Units of Free Energy and Electrochemical Cell Potentials Notes on General Chemistry
Units of free energy and electrochemical cell potentials Notes on General Chemistry http://quantum.bu.edu/notes/GeneralChemistry/FreeEnergyUnits.pdf Last updated Wednesday, March 15, 2006 9:45:57-05:00 Copyright © 2006 Dan Dill ([email protected]) Department of Chemistry, Boston University, Boston MA 02215 "The devil is in the details." Units of DG for chemical transformations There is a subtlety about the relation between DG and K, namely how DG changes when the amounts of reactants and products change. Gibbs free energy G = H - TS is an extensive quantity, that is, it depends on how much of the system we have, since H and S are both extensive (T is intensive). This means if we double the reactants and products, 2 a A V 2 b B then DG must also double, but the expression DG = RTln Q K found in textbooks does not seem to contain the amounts of reactants and products! In fact it does contain these, because theH êstoichiometricL coefficients appear as exponents in Q and K. Thereby, doubling the moles of reactants and products will change Q and K into their square, which will double DG. Here is how. DG doubled = RTln Q2 K2 = RTln Q K 2 H = 2LRTln Q K H ê L = 2 DG original H ê L This result evidently means thatH ê L H L the units of DG are energy, not energy per mole, but with the understanding that it is the change in Gibbs free energy per mole of reaction as written. The question arises, why is this not taken account by the explicit units in the equation for DG? The answer is that the appropriate unit has been omitted. -
The Excitable Cell. Resting Membrane Potential and Action Potential (1&2)
The excitable cell. Resting Membrane Potential and Action Potential (1&2) Dr Sergey Kasparov School of Medical Sciences, Room E9 THIS TOPIC IS ALSO COVERED IN TUTORIALS! Teaching home page: http://www.bristol.ac.uk/phys-pharm/media/teaching/ Why do we call these cells “excitable”? Real action potentials.avi The key point: Bioelectricity is generated by the ions moving across cellular membranes Concentration of selected solutes in intracellular fluid and extracellular fluid in millimols mM 160 140 120 100 Insi de the cell 80 60 In extracellular fluid 40 20 0 1 The Na+/K+ pump outside inside [[mMmM]] + + [[mMmM]] + + + + + + + Na 145 + + 15 + K 4 + + 140 ATPATP ••isis an active ion transporter (ATP‐dependent) ••isis responsible for creating and upholding Na+ and K+ concentration gradients ••isis electrogenic – pumps 3 Na+ versus 2 K+ ions Reminder: Movement of ions is affected by concentration gradient and the electrical field Chemical driving force _ _ + + _ + + Electrical driving force _ + + _ + + + _+ _ + _ + + + + _ + _ + _ + + _ Net flux + + + + _ + _ + + V REMINDER: Diffusion through Ion Channels A leak channel A gated channel Both leak and gated channels allow movement of molecules (mainly inorganic ions) down the electrochemical gradient. So, if the gradient reverses, the ions will flow in the opposite direction. 1. The channels are aqueous pores through the membrane. 2. The channels are usually quite selective, for example some only pass Na+, others K+, still others – Cl- 3. Gated channels may be opened or closed by various factors -
Dissociation Constants of Oxalic Acid in Aqueous Sodium Chloride and Sodium Trifluoromethanesulfonate Media to 175 °C
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by DigitalCommons@University of Nebraska University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Earth and Atmospheric Sciences, Department Papers in the Earth and Atmospheric Sciences of 1998 Dissociation Constants of Oxalic Acid in Aqueous Sodium Chloride and Sodium Trifluoromethanesulfonate Media to 175 °C Richard Kettler University of Nebraska-Lincoln, [email protected] David J. Wesolowski Oak Ridge National Laboratory Donald A. Palmer Oak Ridge National Laboratory Follow this and additional works at: https://digitalcommons.unl.edu/geosciencefacpub Part of the Earth Sciences Commons Kettler, Richard; Wesolowski, David J.; and Palmer, Donald A., "Dissociation Constants of Oxalic Acid in Aqueous Sodium Chloride and Sodium Trifluoromethanesulfonate Media to 175 °C" (1998). Papers in the Earth and Atmospheric Sciences. 135. https://digitalcommons.unl.edu/geosciencefacpub/135 This Article is brought to you for free and open access by the Earth and Atmospheric Sciences, Department of at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Papers in the Earth and Atmospheric Sciences by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. J. Chem. Eng. Data 1998, 43, 337-350 337 Dissociation Constants of Oxalic Acid in Aqueous Sodium Chloride and Sodium Trifluoromethanesulfonate Media to 175 °C Richard M. Kettler*,† Department of Geology, University of Nebraska, Lincoln, Nebraska 68588-0340 David J. Wesolowski‡ and Donald A. Palmer§ Chemical and Analytical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831-6110 The first and second molal dissociation constants of oxalic acid were measured potentiometrically in a concentration cell fitted with hydrogen electrodes. -
The Action Potential
See discussions, stats, and author profiles for this publication at: http://www.researchgate.net/publication/6316219 The action potential ARTICLE in PRACTICAL NEUROLOGY · JULY 2007 Source: PubMed CITATIONS READS 16 64 2 AUTHORS, INCLUDING: Mark W Barnett The University of Edinburgh 21 PUBLICATIONS 661 CITATIONS SEE PROFILE Available from: Mark W Barnett Retrieved on: 24 October 2015 192 Practical Neurology HOW TO UNDERSTAND IT Pract Neurol 2007; 7: 192–197 The action potential Mark W Barnett, Philip M Larkman t is over 60 years since Hodgkin and called ion channels that form the permeation Huxley1 made the first direct recording of pathways across the neuronal membrane. the electrical changes across the neuro- Although the first electrophysiological nal membrane that mediate the action recordings from individual ion channels were I 2 potential. Using an electrode placed inside a not made until the mid 1970s, Hodgkin and squid giant axon they were able to measure a Huxley predicted many of the properties now transmembrane potential of around 260 mV known to be key components of their inside relative to outside, under resting function: ion selectivity, the electrical basis conditions (this is called the resting mem- of voltage-sensitivity and, importantly, a brane potential). The action potential is a mechanism for quickly closing down the transient (,1 millisecond) reversal in the permeability pathways to ensure that the polarity of this transmembrane potential action potential only moves along the axon in which then moves from its point -
Neuronal Signaling Neuroscience Fundamentals > the Nerve Cell > the Nerve Cell
Neuronal Signaling Neuroscience Fundamentals > The Nerve Cell > The Nerve Cell NEURONAL SIGNALING SUMMARY ACTION POTENTIALS See: Action Potentials Key Features • All-or-nothing events • Self-propagating • Conduction speed determined by axon diameter (thicker means faster) and amount of myelination (more myelin means faster transmission). CHEMICAL SYNAPSE Steps of Chemical Synapsis 1) The action potential travels down axon of presynaptic neuron. 2) Vesicle fuses with plasma membrane and releases neurotransmitter into the synaptic cleft. 3) Neurotransmitters bind to ligand-gated ion channels, opening them. 4) Ions entering through the open channels cause a depolarization of the membrane, opening voltage-gated ion channels. 5) Ions pass through these voltage-gated ion channels, causing further depolarization of the membrane. 6) This depolarization (action potential) travels along the membrane as more voltage-gated ion channels are opened. ELECTRICAL SYNAPSE • Cytoplasms of adjacent neurons are connected, allowing ions (and action potentials) to travel directly to the next cell. NEURONAL CODING OF STIMULUS STRENGTH Action Potential Frequency • Stimulus strength is based on frequency of action potentials. Action Potential Strength • Strong stimuli can produce another action potential during the relative refractory period. 1 / 7 ABSOLUTE REFRACTORY PERIOD No further action potentials • Voltage-gated sodium channels are open or inactivated so another stimulus, no matter its strength, CANNOT elicit another action potential. RELATIVE REFRACTORY -
Ch.14-16 Electrochemistry Redox Reaction
Redox Reaction - the basics ox + red <=> red + ox Ch.14-16 1 2 1 2 Oxidizing Reducing Electrochemistry Agent Agent Redox reactions: involve transfer of electrons from one species to another. Oxidizing agent (oxidant): takes electrons Reducing agent (reductant): gives electrons Redox Reaction - the basics Balance Redox Reactions (Half Reactions) Reduced Oxidized 1. Write down the (two half) reactions. ox1 + red2 <=> red1 + ox2 2. Balance the (half) reactions (Mass and Charge): a. Start with elements other than H and O. Oxidizing Reducing Agent Agent b. Balance O by adding water. c. balance H by adding H+. Redox reactions: involve transfer of electrons from one d. Balancing charge by adding electrons. species to another. (3. Multiply each half reaction to make the number of Oxidizing agent (oxidant): takes electrons electrons equal. Reducing agent (reductant): gives electrons 4. Add the reactions and simplify.) Fe3+ + V2+ → Fe2+ + V3 + Example: Balance the two half reactions and redox Important Redox Titrants and the Reactions reaction equation of the titration of an acidic solution of Na2C2O4 (sodium oxalate, colorless) with KMnO4 (deep purple). Oxidizing Reagents (Oxidants) - 2- 2+ MnO4 (qa ) + C2O4 (qa ) → Mn (qa ) + CO2(g) (1)Potassium Permanganate +qa -qa 2-qa 16H ( ) + 2MnO4 ( ) + 5C2O4 ( ) → − + − 2+ 2+ MnO 4 +8H +5 e → Mn + 4 H2 O 2Mn (qa ) + 8H2O(l) + 10CO2( g) MnO − +4H+ + 3 e − → MnO( s )+ 2 H O Example: Balance 4 2 2 Sn2+ + Fe3+ <=> Sn4+ + Fe2+ − − 2− MnO4 + e→ MnO4 2+ - 3+ 2+ Fe + MnO4 <=> Fe + Mn 1 Important Redox Titrants