Structure of Natural Juniperus Excelsa Stands in Northwest of Iran
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Phylogenetic Analyses of Juniperus Species in Turkey and Their Relations with Other Juniperus Based on Cpdna Supervisor: Prof
MOLECULAR PHYLOGENETIC ANALYSES OF JUNIPERUS L. SPECIES IN TURKEY AND THEIR RELATIONS WITH OTHER JUNIPERS BASED ON cpDNA A THESIS SUBMITTED TO THE GRADUATE SCHOOL OF NATURAL AND APPLIED SCIENCES OF MIDDLE EAST TECHNICAL UNIVERSITY BY AYSUN DEMET GÜVENDİREN IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY IN BIOLOGY APRIL 2015 Approval of the thesis MOLECULAR PHYLOGENETIC ANALYSES OF JUNIPERUS L. SPECIES IN TURKEY AND THEIR RELATIONS WITH OTHER JUNIPERS BASED ON cpDNA submitted by AYSUN DEMET GÜVENDİREN in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Department of Biological Sciences, Middle East Technical University by, Prof. Dr. Gülbin Dural Ünver Dean, Graduate School of Natural and Applied Sciences Prof. Dr. Orhan Adalı Head of the Department, Biological Sciences Prof. Dr. Zeki Kaya Supervisor, Dept. of Biological Sciences METU Examining Committee Members Prof. Dr. Musa Doğan Dept. Biological Sciences, METU Prof. Dr. Zeki Kaya Dept. Biological Sciences, METU Prof.Dr. Hayri Duman Biology Dept., Gazi University Prof. Dr. İrfan Kandemir Biology Dept., Ankara University Assoc. Prof. Dr. Sertaç Önde Dept. Biological Sciences, METU Date: iii I hereby declare that all information in this document has been obtained and presented in accordance with academic rules and ethical conduct. I also declare that, as required by these rules and conduct, I have fully cited and referenced all material and results that are not original to this work. Name, Last name : Aysun Demet GÜVENDİREN Signature : iv ABSTRACT MOLECULAR PHYLOGENETIC ANALYSES OF JUNIPERUS L. SPECIES IN TURKEY AND THEIR RELATIONS WITH OTHER JUNIPERS BASED ON cpDNA Güvendiren, Aysun Demet Ph.D., Department of Biological Sciences Supervisor: Prof. -
Morphology and Morphogenesis of the Seed Cones of the Cupressaceae - Part II Cupressoideae
1 2 Bull. CCP 4 (2): 51-78. (10.2015) A. Jagel & V.M. Dörken Morphology and morphogenesis of the seed cones of the Cupressaceae - part II Cupressoideae Summary The cone morphology of the Cupressoideae genera Calocedrus, Thuja, Thujopsis, Chamaecyparis, Fokienia, Platycladus, Microbiota, Tetraclinis, Cupressus and Juniperus are presented in young stages, at pollination time as well as at maturity. Typical cone diagrams were drawn for each genus. In contrast to the taxodiaceous Cupressaceae, in Cupressoideae outgrowths of the seed-scale do not exist; the seed scale is completely reduced to the ovules, inserted in the axil of the cone scale. The cone scale represents the bract scale and is not a bract- /seed scale complex as is often postulated. Especially within the strongly derived groups of the Cupressoideae an increased number of ovules and the appearance of more than one row of ovules occurs. The ovules in a row develop centripetally. Each row represents one of ascending accessory shoots. Within a cone the ovules develop from proximal to distal. Within the Cupressoideae a distinct tendency can be observed shifting the fertile zone in distal parts of the cone by reducing sterile elements. In some of the most derived taxa the ovules are no longer (only) inserted axillary, but (additionally) terminal at the end of the cone axis or they alternate to the terminal cone scales (Microbiota, Tetraclinis, Juniperus). Such non-axillary ovules could be regarded as derived from axillary ones (Microbiota) or they develop directly from the apical meristem and represent elements of a terminal short-shoot (Tetraclinis, Juniperus). -
Perspectives of World Science and Education
1 PERSPECTIVES OF WORLD SCIENCE AND EDUCATION Abstracts of X International Scientific and Practical Conference Osaka, Japan 17-19 June 2020 Osaka, Japan 2020 2 UDC 001.1 The 10th International scientific and practical conference “Perspectives of world science and education” (June 17-19, 2020) CPN Publishing Group, Osaka, Japan. 2020. 560 p. ISBN 978-4-9783419-8-3 The recommended citation for this publication is: Ivanov I. Analysis of the phaunistic composition of Ukraine // Perspectives of world science and education. Abstracts of the 10th International scientific and practical conference. CPN Publishing Group. Osaka, Japan. 2020. Pp. 21-27. URL: https://sci-conf.com.ua. Editor Komarytskyy M.L. Ph.D. in Economics, Associate Professor Collection of scientific articles published is the scientific and practical publication, which contains scientific articles of students, graduate students, Candidates and Doctors of Sciences, research workers and practitioners from Europe, Ukraine, Russia and from neighbouring coutries and beyond. The articles contain the study, reflecting the processes and changes in the structure of modern science. The collection of scientific articles is for students, postgraduate students, doctoral candidates, teachers, researchers, practitioners and people interested in the trends of modern science development. e-mail: [email protected] homepage: http://sci-conf.com.ua ©2020 Scientific Publishing Center “Sci-conf.com.ua” ® ©2020 CPN Publishing Group ® ©2020 Authors of the articles 3 TABLE OF CONTENTS 1. Ahmadova G. 11 PEER ASSISTANCE IN EFL WRITING. 2. Bogatov Ie. O. 16 THE PROBLEM OF UTILIZING PROCESS-MINING APPROACHES IN ENTERPRISE REENGINEERING. 3. Ismayılov V. A., Hajieva N. A., Gamzaeva Ja. -
The Ecological Status of Juniperus Foetidissima Forest Stands in the Mt
sustainability Article The Ecological Status of Juniperus foetidissima Forest Stands in the Mt. Oiti-Natura 2000 Site in Greece Nikolaos Proutsos * , Alexandra Solomou, George Karetsos, Konstantinia Tsagari, George Mantakas, Konstantinos Kaoukis, Athanassios Bourletsikas and George Lyrintzis Hellenic Agricultural Organization “Demeter”, Institute of Mediterranean Forest Ecosystems, Terma Alkmanos, 11528 Athens, Greece; [email protected] (A.S.); [email protected] (G.K.); [email protected] (K.T.); [email protected] (G.M.); [email protected] (K.K.); [email protected] (A.B.); [email protected] (G.L.) * Correspondence: [email protected]; Tel.: +30-2107-787535 Abstract: Junipers face multiple threats induced both by climate and land use changes, impacting their expansion and reproductive dynamics. The aim of this work is to evaluate the ecological status of Juniperus foetidissima Willd. forest stands in the protected Natura 2000 site of Mt. Oiti in Greece. The study of the ecological status is important for designing and implementing active management and conservation actions for the species’ protection. Tree size characteristics (height, breast height diameter), age, reproductive dynamics, seed production and viability, tree density, sex, and habitat expansion were examined. The data analysis revealed a generally good ecological status of the habitat with high plant diversity. However, at the different juniper stands, subpopulations present high variability and face different problems, such as poor tree density, reduced numbers of juvenile trees or poor seed production, inadequate male:female ratios, a small number of female trees, reduced numbers of seeds with viable embryos, competition with other woody species, grazing, and Citation: Proutsos, N.; Solomou, A.; illegal logging. From the results, the need for site-specific active management and interventions is Karetsos, G.; Tsagari, K.; Mantakas, demonstrated in order to preserve or achieve the good status of the habitat at all stands in the region. -
Literaturverzeichnis
Literaturverzeichnis Abaimov, A.P., 2010: Geographical Distribution and Ackerly, D.D., 2009: Evolution, origin and age of Genetics of Siberian Larch Species. In Osawa, A., line ages in the Californian and Mediterranean flo- Zyryanova, O.A., Matsuura, Y., Kajimoto, T. & ras. Journal of Biogeography 36, 1221–1233. Wein, R.W. (eds.), Permafrost Ecosystems. Sibe- Acocks, J.P.H., 1988: Veld Types of South Africa. 3rd rian Larch Forests. Ecological Studies 209, 41–58. Edition. Botanical Research Institute, Pretoria, Abbadie, L., Gignoux, J., Le Roux, X. & Lepage, M. 146 pp. (eds.), 2006: Lamto. Structure, Functioning, and Adam, P., 1990: Saltmarsh Ecology. Cambridge Uni- Dynamics of a Savanna Ecosystem. Ecological Stu- versity Press. Cambridge, 461 pp. dies 179, 415 pp. Adam, P., 1994: Australian Rainforests. Oxford Bio- Abbott, R.J. & Brochmann, C., 2003: History and geography Series No. 6 (Oxford University Press), evolution of the arctic flora: in the footsteps of Eric 308 pp. Hultén. Molecular Ecology 12, 299–313. Adam, P., 1994: Saltmarsh and mangrove. In Groves, Abbott, R.J. & Comes, H.P., 2004: Evolution in the R.H. (ed.), Australian Vegetation. 2nd Edition. Arctic: a phylogeographic analysis of the circu- Cambridge University Press, Melbourne, pp. marctic plant Saxifraga oppositifolia (Purple Saxi- 395–435. frage). New Phytologist 161, 211–224. Adame, M.F., Neil, D., Wright, S.F. & Lovelock, C.E., Abbott, R.J., Chapman, H.M., Crawford, R.M.M. & 2010: Sedimentation within and among mangrove Forbes, D.G., 1995: Molecular diversity and deri- forests along a gradient of geomorphological set- vations of populations of Silene acaulis and Saxi- tings. -
Juniperus Excelsa M.Bieb) Date Published Online: 25/11/2016; Humaira Abdul Wahid*, Muhammad Younas Khan Barozai, Muhammad Din
www.als-journal.com/ ISSN 2310-5380/ November 2016 Full Length Research Article Advancements in Life Sciences – International Quarterly Journal of Biological Sciences A R T I C L E I N F O Open Access Date Received: 03/09/2016; Functional characterization of fifteen hundred transcripts from Date Revised: 07/11/2016; Ziarat juniper (Juniperus excelsa M.Bieb) Date Published Online: 25/11/2016; Humaira Abdul Wahid*, Muhammad Younas Khan Barozai, Muhammad Din Authors’ Affiliation: Abstract Department of Botany, University of Balochistan - Pakistan ackground: Ziarat juniper (Juniperus excelsa M.Bieb) is an evergreen and dominant species of Balochistan juniper forests. This forest is providing many benefits to regional ecosystems and *Corresponding Author: surrounding populations. No functional genomics study is reported for this important juniper Humaira Abdul Wahid B plant. This research is aimed to characterize the Ziarat juniper functional genome based on the Email: [email protected] analyses of 1500 transcripts. Methods: Total RNA from shoot of Juniperus excelsa was extracted and subjected for transcriptome How to Cite: Wahid HA, Barozai MYK, sequencing using Illumina HiSeq 2000 with the service from Macrogen, Inc., South Korea. The Illumina Din M (2016). Functional sequenced data was subjected to bioinformatics analysis. Quality assessment and data filtration was characterization of fifteen hundred transcripts from performed for the removal of low-quality reads, ambiguous reads and adaptor sequences. The high-quality Ziarat juniper (Juniperus clean reads data was deposited in the Sequence Read Archive (SRA) at NCBI, and used for downstream excelsa M.Bieb). Adv. Life Sci. 4(1): 20-26. processes. Fifteen hundred transcripts were randomly chosen and used for functional characterization. -
Tree of the Year 2013
The Troodos mountain Stinking juniper (Juniperus foetidissima) belongs to the Distribution - Habitat Cupressaceae family. The genus includes about 60 species, widely distributed throughout the northern hemisphere, mainly in mild climates. It is a widely distributed species growing on mountainous areas of the Balkans, Southeastern Europe and Southwestern Asia. Juniper is a native species of Albania, Greece, Many Juniper species are used in landscaping as well as for timber, resin and essential oils Turkey, and Syria and indigenous to Cyprus, where it is restricted to the Troodos area – production and used to flavor a wide variety of foods and drinks . Prodromos, Kryos Potamos, Chionistra, Almyrolivado, Kannoures, and elsewhere on Apart from the Juniperus foetidissima, three more Juniperus species are also found in altitudes of 1000 - 1950 m. Cyprus: Juniperus oxycedrus , Juniperus phoenicea (juniper of Akamas) , and Juniperus excelsa As a tree, which is the basic form of the species, juniper is the basic constituent of the (juniper of Madari) . priority habitat type 9563* (Forest clumps with Juniperus foetidissima) of Annex I, of the European Habitats Directive (92/43/EEC) which is protected at European level. Description Rarely, as a result of felling and other human activities, juniper grows in a bushy form It is a medium-sized, long-lived evergreen tree, usually 3-5 m high and occasionally up to forming the habitat type 5213 of the above Habitat Directive. 20 m, with a lifespan up to 1500 years. Its crown is broadly conical, becoming rounded or irregular with time. Historical Elements The bark on young trees or branches is smooth, and on old trees fibrous, grey, peeling off Gennadios and Kavvadas believed that the plant is probably the “brathy (juniper) with longitudinally in strips. -
(<I>Morchella</I>) Species in the Elata Subclade
MYCOTAXON ISSN (print) 0093-4666 (online) 2154-8889 © 2016. Mycotaxon, Ltd. April–June 2016—Volume 131, pp. 467–482 http://dx.doi.org/10.5248/131.467 Four new morel (Morchella) species in the elata subclade (M. sect. Distantes) from Turkey Hatıra Taşkın1*, Hasan Hüseyİn Doğan2, Saadet Büyükalaca1, Philippe Clowez3, Pierre-Arthur Moreau4 & Kerry O’Donnell5 1Department of Horticulture, Faculty of Agriculture, University of Çukurova, Adana, 01330, Turkey 2Department of Biology, Faculty of Science, University of Selçuk, Konya, 42079, Turkey 356 place des Tilleuls, F-60400 Pont-l’Evêque, France 4 EA 4483, UFR Pharmacie, Université de Lille, F-59000 Lille cedex, France 5Mycotoxin Prevention and Applied Mycology Research Unit, National Center for Agricultural Utilization Research, US Department of Agriculture, Agricultural Research Service, 1815 North University Street, Peoria, Illinois 61604, USA * Correspondence to: [email protected] Abstract—Four Turkish Morchella species identified in published multilocus molecular phylogenetic analyses are described here as new, using detailed macro- and microscopic data: M. mediterraneensis (Mel-27), M. fekeensis (Mel-28), M. magnispora (Mel-29), and M. conifericola (Mel-32). A distribution map of morels identified to date in Turkey is also provided. Key words—Ascomycota, conservation, edible fungi, Morchellaceae, systematics, taxonomy Introduction True morels (Morchella), among the most highly prized edible macrofungi, are classified in the Morchellaceae (Pezizales, Ascomycota). This monophyletic family also includes Disciotis, Kalapuya, Fischerula, Imaia, Leucangium, and Verpa (O’Donnell et al. 1997, Trappe et al. 2010). Several multilocus DNA sequence-based analyses of Morchella that employed phylogenetic species recognition based on genealogical concordance (GCPSR sensu Taylor et al. 2000) have revealed that most species exhibit continental endemism and provincialism in the northern hemisphere (Du et al. -
Evidence of Relictual Introgression Or Incomplete Lineage Sorting in Nrdna of Juniperus Excelsa and J
University of Texas Rio Grande Valley ScholarWorks @ UTRGV Health and Biomedical Sciences Faculty Publications and Presentations College of Health Professions 4-4-2016 Evidence of relictual introgression or incomplete lineage sorting in nrDNA of Juniperus excelsa and J. polycarpos in Asia Minor Robert P. Adams Baylor University Metin Armagan Adam Boratynski Bouchra Douaihy Magda Dou Dagher-Kharrat See next page for additional authors Follow this and additional works at: https://scholarworks.utrgv.edu/hbs_fac Part of the Plant Sciences Commons Recommended Citation Adams, R., Armağan, M., Boratyński, A., Douaihy, B., Dagher-Kharrat, M. D., Farzaliyev, V., Gucel, S., Mataraci, T., Tashev, A., & Schwarzbach, A. E. (2016). Evidence of relictual introgression or incomplete lineage sorting in nrDNA of Juniperus excelsa and J. polycarpos in Asia Minor. Phytologia, 98(2), 146–155. This Article is brought to you for free and open access by the College of Health Professions at ScholarWorks @ UTRGV. It has been accepted for inclusion in Health and Biomedical Sciences Faculty Publications and Presentations by an authorized administrator of ScholarWorks @ UTRGV. For more information, please contact [email protected], [email protected]. Authors Robert P. Adams, Metin Armagan, Adam Boratynski, Bouchra Douaihy, Magda Dou Dagher-Kharrat, Vahid Farzaliyev, Salih Gucel, Tuğrul Mataraci, and Andrea E. Schwarzbach This article is available at ScholarWorks @ UTRGV: https://scholarworks.utrgv.edu/hbs_fac/41 146 Phytologia (April 4, 2016) 98(2) Evidence -
Structure and Regeneration Patterns of Juniperus Polycarpos C.Koch in Alborz Mountains, Iran
J. Basic. Appl. Sci. Res., 2(6)5993-5996, 2012 ISSN 2090-4304 Journal of Basic and Applied © 2012, TextRoad Publication Scientific Research www.textroad.com Structure and Regeneration Patterns of Juniperus polycarpos C.Koch in Alborz Mountains, Iran Kambiz Taheri Abkenai1, Farhad Fadaie Khosh-e-bijari2, R.Jahdi3, Bahman Sotoudeh Foumani4 1Assistant professor, Faculty of Natural Resources, University of Guilan, Rasht, Iran. 2M.S. Graduate, Faculty of Natural Resources, University of Mazandaran, Sari, Iran. 3M.S. Graduate, Faculty of Natural Resources, University of Tehran, Karaj, Iran. 4Ph.D. candidate of Azad University, Science and Research Campus, Tehran, Iran. ABSTRACT The absence of natural regeneration is the most important problem of Junipers forest. Regeneration in these forests is strongly inhabited by grazing pressure and human disturbance. The rate of natural regeneration in Iran is low, therefore in present research sample plots are carried out to analyze the structure and regeneration patterns of the Juniperus polycarpos c.koch in Alborz Mountains of Iran. In each sampling plot, the diameter at breast height, height of all trees and regeneration density and were measured. Statistical analysis showed that there was a positive correlation between regeneration density, mature trees density and basal area per hectare. All Juniperus polycarpos c.koch trees with height up to 1.5m were considered as seedling (regeneration plants) and were classified into tree groups: S seedling, P seedlings, and G seedlings. The results of regeneration in three groups showed that the regeneration of S seedlings was the most frequent and the regeneration of P seedlings was the least frequent. -
In Vitro and in Vivo Assessment of Anti-Leishmanial Efficacy of Leaf
Iran Red Crescent Med J. 2019 June; 21(6):e87754. doi: 10.5812/ircmj.87754. Published online 2019 June 8. Research Article In vitro and in vivo Assessment of Anti-Leishmanial Efficacy of Leaf, Fruit, and Fractions of Juniperus excelsa Against Axenic Amastigotes of Leishmania major and Topical Formulation in BALB/c Mice Somayeh Mirzavand 1, Gholamreza Hatam 1, *, Mahmoodreza Moein 2 and Mohammad M Zarshenas 2 1Basic Sciences in Infectious Diseases Research Center, Shiraz University of Medical Sciences, Shiraz, Iran 2Medicinal Plants Processing Research Center, Shiraz University of Medical Sciences, Shiraz, Iran *Corresponding author: Basic Sciences in Infectious Diseases Research Center, Shiraz University of Medical Sciences, Shiraz, Iran. Tel/Fax: +98-7132305291, Email: [email protected] Received 2018 December 17; Revised 2019 May 11; Accepted 2019 May 13. Abstract Background: Leishmaniasis is a parasitic disease caused by Leishmania protozoa. Iran is an endemic region for leishmaniasis and thus, many natural medicaments, such as Juniperus excelsa, are traditionally being used for the treatment of its cutaneous form. Objectives: The current study aimed at assessing the anti-leishmanial activities of this medicament’s leaf and fruit extracts and respective leaf fractions against Leishmania major as the causative agent of zoonotic cutaneous leishmaniasis in both in vitro and in vivo models. Methods: This experimental study was carried out at Shiraz University of Medical Sciences, Shiraz, Iran, during the year 2013. For the generation of axenic amastigotes, promastigotes were mass cultivated and incubated at 33 to 34°C and pH 3.5. The anti-amastigote activity was evaluated using the colorimetric assay. For in vivo study, promastigotes were inoculated in 40 female BALB/c mice tails. -
Nutritional and Anti-Nutritional Study of Juniperus Excelsa (M.Bieb) of Ziarat, Balochistan, Pakistan, Environ Sci Ecol: Curr Res 1: 0008
Research Article Nutritional and Anti-Nutritional Study Environmental of Juniperus Excelsa (M.Bieb) of Ziarat, Sciences and Balochistan, Pakistan Shahbano Ali Kashani1, Imran Ali2, Muhammad Sharif Hasni2, Mudassir Asrar1, Ecology: Current Jabran Ahmad1, Muhammad Zeeshan Shahzad3 1Department of Botany, University of Balochistan, Quetta, Pakistan ²Institution of Biochemistry, University of Balochistan, Quetta, Pakistan Research (ESECR) ³Department of Immunology & Biotechnology Medical School, University of Pecs, Hungary Volume 1 Issue 2, 2020 Abstract Article Information The ecological entity and juristic personality of River Ganga traced from the standpoint of the legal status vis-à-vis the reverJuniper forest of Ziarat, Balochistan, Pakistan is the second largest forest in the world. Ziarat has world oldest Juniper Received date : August 14, 2020 trees. The Juniper forest of Ziarat is in a very bad shape by over- grazing, excessive cutting and overexploitation by the local Published date: September 18 2020 people. The berries were powdered and used to analyze the nutritional and antinutritional compositions; like (Alkaloids, Flavonoids, Terponoids, Saponins, Pectin, Total Phenols and Steroid contents) were reported in different concentration. Also reported the composition of proteins and carbohydrates, some vitamins (A, B1, B3, and C) were found in varying *Corresponding author concentration. These all chemical compounds obtained the responsible for nutritional and antinutritional values. The all Muhammad Zeeshan Shahzad, chemical compositions