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Eastern Anatolia
A general survey of the vegetation of north - eastern anatolia by İBRAHİM AT AL AY Introduction The study area named NE Anatolia which is bounded by the Erzurum-Rize line on the west, the Erzurum-Tuzluca line or the Aras river valley on the south, comprises the subregion of the Eastern Black Sea and the subregion of Erzurum- Kars in Eastern Anatolia. From the vegetational point of view, the lower part of the Eastern Black Sea Mountains was covered by broad-leaved forests, and the upper section was occupied by pine forests. The southern slopes of the East Black Sea Mountains were covered by xerophytic and winter hardy forest from the bottom to the upper section, while the slopes facing the north of the ranges were covered by winter hardy and humid forests such as spurce, fir and Scotch pine. The upper watershed areas of the Çoruh river basin were occupied by oak, juniper, and shrub formations. The northern slopes and upper part of the continental sector of Eastern Ana tolia were occupied by scotch pine. Natural steppe vegetation was common on the tectonic corridor of the Aras valley, the Oltu basin, and the Kağızman-Tuzluca basin. Destroyed forest areas were covered by the mountain steppe which belong to the irano-Turanian ele ments. Tall prairie-like grass was seen between the Erzurum-Kars plateau. Alpine and subalpine grasses were widespread on the upper part of mountains. The aim of this short article is to explain the distribution of vegetation-for- mation and the evolution of vegetation and floristic composition in this region. -
Phylogenetic Analyses of Juniperus Species in Turkey and Their Relations with Other Juniperus Based on Cpdna Supervisor: Prof
MOLECULAR PHYLOGENETIC ANALYSES OF JUNIPERUS L. SPECIES IN TURKEY AND THEIR RELATIONS WITH OTHER JUNIPERS BASED ON cpDNA A THESIS SUBMITTED TO THE GRADUATE SCHOOL OF NATURAL AND APPLIED SCIENCES OF MIDDLE EAST TECHNICAL UNIVERSITY BY AYSUN DEMET GÜVENDİREN IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY IN BIOLOGY APRIL 2015 Approval of the thesis MOLECULAR PHYLOGENETIC ANALYSES OF JUNIPERUS L. SPECIES IN TURKEY AND THEIR RELATIONS WITH OTHER JUNIPERS BASED ON cpDNA submitted by AYSUN DEMET GÜVENDİREN in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Department of Biological Sciences, Middle East Technical University by, Prof. Dr. Gülbin Dural Ünver Dean, Graduate School of Natural and Applied Sciences Prof. Dr. Orhan Adalı Head of the Department, Biological Sciences Prof. Dr. Zeki Kaya Supervisor, Dept. of Biological Sciences METU Examining Committee Members Prof. Dr. Musa Doğan Dept. Biological Sciences, METU Prof. Dr. Zeki Kaya Dept. Biological Sciences, METU Prof.Dr. Hayri Duman Biology Dept., Gazi University Prof. Dr. İrfan Kandemir Biology Dept., Ankara University Assoc. Prof. Dr. Sertaç Önde Dept. Biological Sciences, METU Date: iii I hereby declare that all information in this document has been obtained and presented in accordance with academic rules and ethical conduct. I also declare that, as required by these rules and conduct, I have fully cited and referenced all material and results that are not original to this work. Name, Last name : Aysun Demet GÜVENDİREN Signature : iv ABSTRACT MOLECULAR PHYLOGENETIC ANALYSES OF JUNIPERUS L. SPECIES IN TURKEY AND THEIR RELATIONS WITH OTHER JUNIPERS BASED ON cpDNA Güvendiren, Aysun Demet Ph.D., Department of Biological Sciences Supervisor: Prof. -
Morphology and Morphogenesis of the Seed Cones of the Cupressaceae - Part II Cupressoideae
1 2 Bull. CCP 4 (2): 51-78. (10.2015) A. Jagel & V.M. Dörken Morphology and morphogenesis of the seed cones of the Cupressaceae - part II Cupressoideae Summary The cone morphology of the Cupressoideae genera Calocedrus, Thuja, Thujopsis, Chamaecyparis, Fokienia, Platycladus, Microbiota, Tetraclinis, Cupressus and Juniperus are presented in young stages, at pollination time as well as at maturity. Typical cone diagrams were drawn for each genus. In contrast to the taxodiaceous Cupressaceae, in Cupressoideae outgrowths of the seed-scale do not exist; the seed scale is completely reduced to the ovules, inserted in the axil of the cone scale. The cone scale represents the bract scale and is not a bract- /seed scale complex as is often postulated. Especially within the strongly derived groups of the Cupressoideae an increased number of ovules and the appearance of more than one row of ovules occurs. The ovules in a row develop centripetally. Each row represents one of ascending accessory shoots. Within a cone the ovules develop from proximal to distal. Within the Cupressoideae a distinct tendency can be observed shifting the fertile zone in distal parts of the cone by reducing sterile elements. In some of the most derived taxa the ovules are no longer (only) inserted axillary, but (additionally) terminal at the end of the cone axis or they alternate to the terminal cone scales (Microbiota, Tetraclinis, Juniperus). Such non-axillary ovules could be regarded as derived from axillary ones (Microbiota) or they develop directly from the apical meristem and represent elements of a terminal short-shoot (Tetraclinis, Juniperus). -
The Ecological Status of Juniperus Foetidissima Forest Stands in the Mt
sustainability Article The Ecological Status of Juniperus foetidissima Forest Stands in the Mt. Oiti-Natura 2000 Site in Greece Nikolaos Proutsos * , Alexandra Solomou, George Karetsos, Konstantinia Tsagari, George Mantakas, Konstantinos Kaoukis, Athanassios Bourletsikas and George Lyrintzis Hellenic Agricultural Organization “Demeter”, Institute of Mediterranean Forest Ecosystems, Terma Alkmanos, 11528 Athens, Greece; [email protected] (A.S.); [email protected] (G.K.); [email protected] (K.T.); [email protected] (G.M.); [email protected] (K.K.); [email protected] (A.B.); [email protected] (G.L.) * Correspondence: [email protected]; Tel.: +30-2107-787535 Abstract: Junipers face multiple threats induced both by climate and land use changes, impacting their expansion and reproductive dynamics. The aim of this work is to evaluate the ecological status of Juniperus foetidissima Willd. forest stands in the protected Natura 2000 site of Mt. Oiti in Greece. The study of the ecological status is important for designing and implementing active management and conservation actions for the species’ protection. Tree size characteristics (height, breast height diameter), age, reproductive dynamics, seed production and viability, tree density, sex, and habitat expansion were examined. The data analysis revealed a generally good ecological status of the habitat with high plant diversity. However, at the different juniper stands, subpopulations present high variability and face different problems, such as poor tree density, reduced numbers of juvenile trees or poor seed production, inadequate male:female ratios, a small number of female trees, reduced numbers of seeds with viable embryos, competition with other woody species, grazing, and Citation: Proutsos, N.; Solomou, A.; illegal logging. From the results, the need for site-specific active management and interventions is Karetsos, G.; Tsagari, K.; Mantakas, demonstrated in order to preserve or achieve the good status of the habitat at all stands in the region. -
Hydrodistillation Extraction Kinetics Regression Models for Essential Oil Yield and Composition in Juniperus Virginiana, J
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Faculty Publications in Food Science and Food Science and Technology Department Technology 3-11-2019 Hydrodistillation Extraction Kinetics Regression Models for Essential Oil Yield and Composition in Juniperus virginiana, J. excelsa, and J. sabina Ivanka B. Semerdjieva Agricultural University, [email protected] Santosh Shiwakoti Washington State University, [email protected] Charles L. Cantrell United States Department of Agriculture, [email protected] Valtcho D. Zheljazkov Oregon State University, [email protected] Tess Astatkie Dalhousie University, [email protected] See next page for additional authors Follow this and additional works at: https://digitalcommons.unl.edu/foodsciefacpub Part of the Food Science Commons Semerdjieva, Ivanka B.; Shiwakoti, Santosh; Cantrell, Charles L.; Zheljazkov, Valtcho D.; Astatkie, Tess; Schlegel, Vicki L.; and Radoukova, Tzenka, "Hydrodistillation Extraction Kinetics Regression Models for Essential Oil Yield and Composition in Juniperus virginiana, J. excelsa, and J. sabina" (2019). Faculty Publications in Food Science and Technology. 294. https://digitalcommons.unl.edu/foodsciefacpub/294 This Article is brought to you for free and open access by the Food Science and Technology Department at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Faculty Publications in Food Science and Technology by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Authors Ivanka B. Semerdjieva, Santosh Shiwakoti, Charles L. Cantrell, Valtcho D. Zheljazkov, Tess Astatkie, Vicki L. Schlegel, and Tzenka Radoukova This article is available at DigitalCommons@University of Nebraska - Lincoln: https://digitalcommons.unl.edu/foodsciefacpub/294 molecules Article Hydrodistillation Extraction Kinetics Regression Models for Essential Oil Yield and Composition in Juniperus virginiana, J. -
Juniperus Excelsa M.Bieb) Date Published Online: 25/11/2016; Humaira Abdul Wahid*, Muhammad Younas Khan Barozai, Muhammad Din
www.als-journal.com/ ISSN 2310-5380/ November 2016 Full Length Research Article Advancements in Life Sciences – International Quarterly Journal of Biological Sciences A R T I C L E I N F O Open Access Date Received: 03/09/2016; Functional characterization of fifteen hundred transcripts from Date Revised: 07/11/2016; Ziarat juniper (Juniperus excelsa M.Bieb) Date Published Online: 25/11/2016; Humaira Abdul Wahid*, Muhammad Younas Khan Barozai, Muhammad Din Authors’ Affiliation: Abstract Department of Botany, University of Balochistan - Pakistan ackground: Ziarat juniper (Juniperus excelsa M.Bieb) is an evergreen and dominant species of Balochistan juniper forests. This forest is providing many benefits to regional ecosystems and *Corresponding Author: surrounding populations. No functional genomics study is reported for this important juniper Humaira Abdul Wahid B plant. This research is aimed to characterize the Ziarat juniper functional genome based on the Email: [email protected] analyses of 1500 transcripts. Methods: Total RNA from shoot of Juniperus excelsa was extracted and subjected for transcriptome How to Cite: Wahid HA, Barozai MYK, sequencing using Illumina HiSeq 2000 with the service from Macrogen, Inc., South Korea. The Illumina Din M (2016). Functional sequenced data was subjected to bioinformatics analysis. Quality assessment and data filtration was characterization of fifteen hundred transcripts from performed for the removal of low-quality reads, ambiguous reads and adaptor sequences. The high-quality Ziarat juniper (Juniperus clean reads data was deposited in the Sequence Read Archive (SRA) at NCBI, and used for downstream excelsa M.Bieb). Adv. Life Sci. 4(1): 20-26. processes. Fifteen hundred transcripts were randomly chosen and used for functional characterization. -
(<I>Morchella</I>) Species in the Elata Subclade
MYCOTAXON ISSN (print) 0093-4666 (online) 2154-8889 © 2016. Mycotaxon, Ltd. April–June 2016—Volume 131, pp. 467–482 http://dx.doi.org/10.5248/131.467 Four new morel (Morchella) species in the elata subclade (M. sect. Distantes) from Turkey Hatıra Taşkın1*, Hasan Hüseyİn Doğan2, Saadet Büyükalaca1, Philippe Clowez3, Pierre-Arthur Moreau4 & Kerry O’Donnell5 1Department of Horticulture, Faculty of Agriculture, University of Çukurova, Adana, 01330, Turkey 2Department of Biology, Faculty of Science, University of Selçuk, Konya, 42079, Turkey 356 place des Tilleuls, F-60400 Pont-l’Evêque, France 4 EA 4483, UFR Pharmacie, Université de Lille, F-59000 Lille cedex, France 5Mycotoxin Prevention and Applied Mycology Research Unit, National Center for Agricultural Utilization Research, US Department of Agriculture, Agricultural Research Service, 1815 North University Street, Peoria, Illinois 61604, USA * Correspondence to: [email protected] Abstract—Four Turkish Morchella species identified in published multilocus molecular phylogenetic analyses are described here as new, using detailed macro- and microscopic data: M. mediterraneensis (Mel-27), M. fekeensis (Mel-28), M. magnispora (Mel-29), and M. conifericola (Mel-32). A distribution map of morels identified to date in Turkey is also provided. Key words—Ascomycota, conservation, edible fungi, Morchellaceae, systematics, taxonomy Introduction True morels (Morchella), among the most highly prized edible macrofungi, are classified in the Morchellaceae (Pezizales, Ascomycota). This monophyletic family also includes Disciotis, Kalapuya, Fischerula, Imaia, Leucangium, and Verpa (O’Donnell et al. 1997, Trappe et al. 2010). Several multilocus DNA sequence-based analyses of Morchella that employed phylogenetic species recognition based on genealogical concordance (GCPSR sensu Taylor et al. 2000) have revealed that most species exhibit continental endemism and provincialism in the northern hemisphere (Du et al. -
Structure and Regeneration Patterns of Juniperus Polycarpos C.Koch in Alborz Mountains, Iran
J. Basic. Appl. Sci. Res., 2(6)5993-5996, 2012 ISSN 2090-4304 Journal of Basic and Applied © 2012, TextRoad Publication Scientific Research www.textroad.com Structure and Regeneration Patterns of Juniperus polycarpos C.Koch in Alborz Mountains, Iran Kambiz Taheri Abkenai1, Farhad Fadaie Khosh-e-bijari2, R.Jahdi3, Bahman Sotoudeh Foumani4 1Assistant professor, Faculty of Natural Resources, University of Guilan, Rasht, Iran. 2M.S. Graduate, Faculty of Natural Resources, University of Mazandaran, Sari, Iran. 3M.S. Graduate, Faculty of Natural Resources, University of Tehran, Karaj, Iran. 4Ph.D. candidate of Azad University, Science and Research Campus, Tehran, Iran. ABSTRACT The absence of natural regeneration is the most important problem of Junipers forest. Regeneration in these forests is strongly inhabited by grazing pressure and human disturbance. The rate of natural regeneration in Iran is low, therefore in present research sample plots are carried out to analyze the structure and regeneration patterns of the Juniperus polycarpos c.koch in Alborz Mountains of Iran. In each sampling plot, the diameter at breast height, height of all trees and regeneration density and were measured. Statistical analysis showed that there was a positive correlation between regeneration density, mature trees density and basal area per hectare. All Juniperus polycarpos c.koch trees with height up to 1.5m were considered as seedling (regeneration plants) and were classified into tree groups: S seedling, P seedlings, and G seedlings. The results of regeneration in three groups showed that the regeneration of S seedlings was the most frequent and the regeneration of P seedlings was the least frequent. -
<I>Xeromphalina Junipericola</I>
MYCOTAXON Volume 110, pp. 247–251 October–December 2009 Xeromphalina junipericola, a rare species new to southeastern Europe Hasan Huseyin Dogan 1& Mitko Karadelev2 [email protected] 1Selcuk University, Science Faculty, Biology Department 42031 Campus/Konya, Turkey [email protected] 2Institute of Biology, Faculty of Natural Science and Mathematics Arhimedova 5, P.O. Box 162, 1000 Skopje, Macedonia Abstract — Xeromphalina junipericola, a species new to Turkish and Macedonian mycobiota, is described. This wood-decaying fungus has been collected on stumps of juniper trees (Juniperus excelsa and J. foetidissima) in six localities situated in the central and southern part of Turkey, and on stump of Juniperus excelsa in one locality in Macedonia. It is a very rare species previously known only from a few localities in Spain. These finds will provide a better picture of its distribution area. Key words — Mycenaceae Introduction Xeromphalina junipericola is a rare species previously known from only a few localities in Spain. The species has a violaceous to purplish tinged pileus, lamellae, and stipe, fusoid, non-coralloid cheilo- and caulocystidia, and small spores. Moreno & Heykoop (1996) described this species from Guadalajara province in Spain as a saprobe on Juniperus thurifera. The same area has been visited a number of times and the species has been collected again on the same substrate (Heykoop & Moreno 2007, Moreno et al. 2002). Specimens collected during a collaborative project between the Institute of Biology within the Faculty of Natural Science and Mathematics in Skopje, the Republic (FYR) of Macedonia, and the Biology Department within the Science and Art Faculty, Selçuk University, from Konya, Turkey, have extended the known range of X. -
In Vitro and in Vivo Assessment of Anti-Leishmanial Efficacy of Leaf
Iran Red Crescent Med J. 2019 June; 21(6):e87754. doi: 10.5812/ircmj.87754. Published online 2019 June 8. Research Article In vitro and in vivo Assessment of Anti-Leishmanial Efficacy of Leaf, Fruit, and Fractions of Juniperus excelsa Against Axenic Amastigotes of Leishmania major and Topical Formulation in BALB/c Mice Somayeh Mirzavand 1, Gholamreza Hatam 1, *, Mahmoodreza Moein 2 and Mohammad M Zarshenas 2 1Basic Sciences in Infectious Diseases Research Center, Shiraz University of Medical Sciences, Shiraz, Iran 2Medicinal Plants Processing Research Center, Shiraz University of Medical Sciences, Shiraz, Iran *Corresponding author: Basic Sciences in Infectious Diseases Research Center, Shiraz University of Medical Sciences, Shiraz, Iran. Tel/Fax: +98-7132305291, Email: [email protected] Received 2018 December 17; Revised 2019 May 11; Accepted 2019 May 13. Abstract Background: Leishmaniasis is a parasitic disease caused by Leishmania protozoa. Iran is an endemic region for leishmaniasis and thus, many natural medicaments, such as Juniperus excelsa, are traditionally being used for the treatment of its cutaneous form. Objectives: The current study aimed at assessing the anti-leishmanial activities of this medicament’s leaf and fruit extracts and respective leaf fractions against Leishmania major as the causative agent of zoonotic cutaneous leishmaniasis in both in vitro and in vivo models. Methods: This experimental study was carried out at Shiraz University of Medical Sciences, Shiraz, Iran, during the year 2013. For the generation of axenic amastigotes, promastigotes were mass cultivated and incubated at 33 to 34°C and pH 3.5. The anti-amastigote activity was evaluated using the colorimetric assay. For in vivo study, promastigotes were inoculated in 40 female BALB/c mice tails. -
Nutritional and Anti-Nutritional Study of Juniperus Excelsa (M.Bieb) of Ziarat, Balochistan, Pakistan, Environ Sci Ecol: Curr Res 1: 0008
Research Article Nutritional and Anti-Nutritional Study Environmental of Juniperus Excelsa (M.Bieb) of Ziarat, Sciences and Balochistan, Pakistan Shahbano Ali Kashani1, Imran Ali2, Muhammad Sharif Hasni2, Mudassir Asrar1, Ecology: Current Jabran Ahmad1, Muhammad Zeeshan Shahzad3 1Department of Botany, University of Balochistan, Quetta, Pakistan ²Institution of Biochemistry, University of Balochistan, Quetta, Pakistan Research (ESECR) ³Department of Immunology & Biotechnology Medical School, University of Pecs, Hungary Volume 1 Issue 2, 2020 Abstract Article Information The ecological entity and juristic personality of River Ganga traced from the standpoint of the legal status vis-à-vis the reverJuniper forest of Ziarat, Balochistan, Pakistan is the second largest forest in the world. Ziarat has world oldest Juniper Received date : August 14, 2020 trees. The Juniper forest of Ziarat is in a very bad shape by over- grazing, excessive cutting and overexploitation by the local Published date: September 18 2020 people. The berries were powdered and used to analyze the nutritional and antinutritional compositions; like (Alkaloids, Flavonoids, Terponoids, Saponins, Pectin, Total Phenols and Steroid contents) were reported in different concentration. Also reported the composition of proteins and carbohydrates, some vitamins (A, B1, B3, and C) were found in varying *Corresponding author concentration. These all chemical compounds obtained the responsible for nutritional and antinutritional values. The all Muhammad Zeeshan Shahzad, chemical compositions -
This Is a Post-Peer-Review, Pre-Copyedit Version of an Article Published in Planta
This is a post-peer-review, pre-copyedit version of an article published in Planta. The final authenticated version is available online at: http://dx.doi.org/10.1007/s00425-015-2380-7 Vibrational microspectroscopy enables chemical characterization of single pollen grains as well as comparative analysis of plant species based on pollen ultrastructure Boris Zimmermann1*, Murat Bağcıoğlu1, Christophe Sandt2, Achim Kohler1,3 1Department of Mathematical Sciences and Technology, Faculty of Environmental Science and Technology, Norwegian University of Life Sciences, 1430, Ås, Norway 2Synchrotron SOLEIL, L'Orme des Merisiers, Saint-Aubin, BP 48, 91192 Gif-sur-Yvette, France 3Nofima AS, Osloveien 1, N-1430 Ås, Norway * Corresponding author: Boris Zimmermann, Department of Mathematical Sciences and Technology, Faculty of Environmental Science and Technology, Norwegian University of Life Sciences, Drøbakveien 31, 1432 Ås, Norway. Tel: +47 6723 1576 Faks: +47 6496 5001 E-mail: [email protected] E-mail addresses of authors: Murat Bağcıoğlu: [email protected] Christophe Sandt: [email protected] Achim Kohler: [email protected] Main conclusion: Chemical imaging of pollen by vibrational microspectroscopy enables characterization of pollen ultrastructure, in particular phenylpropanoid components in grain wall for comparative study of extant and extinct plant species. Keywords: FTIR microspectroscopy, Raman microspectroscopy, Pinales, imaging, cell wall. 1 SUMMARY A detailed characterization of conifer (Pinales) pollen by vibrational microspectroscopy is presented. The main problems that arise during vibrational measurements were scatter and saturation issues in Fourier transform infrared (FTIR), and fluorescence and penetration depth issues in Raman. Single pollen grains larger than approx. 15 µm can be measured by FTIR microspectroscopy using conventional light sources, while smaller grains may be measured by employing synchrotron light sources.