Spri-Based Hemagglutinin Quantitative Assay for Influenza
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A Conserved Influenza a Virus Nucleoprotein Code Controls Specific
ARTICLE Received 8 Mar 2016 | Accepted 10 Aug 2016 | Published 21 Sep 2016 DOI: 10.1038/ncomms12861 OPEN A conserved influenza A virus nucleoprotein code controls specific viral genome packaging E´tori Aguiar Moreira1,2,3, Anna Weber1, Hardin Bolte1,2,3, Larissa Kolesnikova4, Sebastian Giese1, Seema Lakdawala5, Martin Beer6, Gert Zimmer7, Adolfo Garcı´a-Sastre8,9,10, Martin Schwemmle1 & Mindaugas Juozapaitis1 Packaging of the eight genomic RNA segments of influenza A viruses (IAV) into viral particles is coordinated by segment-specific packaging sequences. How the packaging signals regulate the specific incorporation of each RNA segment into virions and whether other viral or host factors are involved in this process is unknown. Here, we show that distinct amino acids of the viral nucleoprotein (NP) are required for packaging of specific RNA segments. This was determined by studying the NP of a bat influenza A-like virus, HL17NL10, in the context of a conventional IAV (SC35M). Replacement of conserved SC35M NP residues by those of HL17NL10 NP resulted in RNA packaging defective IAV. Surprisingly, substitution of these conserved SC35M amino acids with HL17NL10 NP residues led to IAV with altered packaging efficiencies for specific subsets of RNA segments. This suggests that NP harbours an amino acid code that dictates genome packaging into infectious virions. 1 Institute of Virology, University Medical Center Freiburg, 79104 Freiburg, Germany. 2 Spemann Graduate School of Biology and Medicine, University of Freiburg, 79104 Freiburg, Germany. 3 Faculty of Biology, University of Freiburg, 79104 Freiburg, Germany. 4 Institute of Virology, Philipps-Universita¨t Marburg, 35043 Marburg, Germany. 5 Department of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania 15217, USA. -
Marine Surface Microlayer As a Source of Enteric Viruses
MARINE SURFACE MICROLAYER AS A SOURCE OF ENTERIC VIRUSES Ana Catarina Bispo Prata Tese de Doutoramento em Ciências do Mar e do Ambiente 2014 Ana Catarina Bispo Prata MARINE SURFACE MICROLAYER AS A SOURCE OF ENTERIC VIRUSES Tese de Candidatura ao grau de Doutor em Ciências do Mar e do Ambiente Especialidade em Oceanografia e Ecossistemas Marinhos submetida ao Instituto de Ciências Biomédicas de Abel Salazar da Universidade do Porto. Programa Doutoral da Universidade do Porto (Instituto de Ciências Biomédicas de Abel Salazar e Faculdade de Ciências) e da Universidade de Aveiro. Orientador – Doutor Adelaide Almeida Categoria – Professora Auxiliar Afiliação – Departamento de Biologia da Universidade de Aveiro Co-orientador – Doutor Newton Carlos Marcial Gomes Categoria – Investigador Principal do CESAM Afiliação – Departamento de Biologia da Universidade de Aveiro LEGAL DETAILS In compliance with what is stated in the legislation in vigor, it is hereby declared that the author of this thesis participated in the creation and execution of the experimental work leading to the results here stated, as well as in their interpretation and writing of the respective manuscripts. This thesis includes one scientific paper published in an international journal and three articles in preparation originated from part of the results obtained in the experimental work referenced as: • Prata C, Ribeiro A, Cunha A , Gomes NCM, Almeida A, 2012, Ultracentrifugation as a direct method to concentrate viruses in environmental waters: virus-like particles enumeration as a new approach to determine the efficiency of recovery, Journal of Environmental Monitoring, 14 (1), 64-70. • Prata C, Cunha A, Gomes N, Almeida A, Surface Microlayer as a source of health relevant enteric viruses in Ria de Aveiro. -
Dissecting Human Antibody Responses Against Influenza a Viruses and Antigenic Changes That Facilitate Immune Escape
University of Pennsylvania ScholarlyCommons Publicly Accessible Penn Dissertations 2018 Dissecting Human Antibody Responses Against Influenza A Viruses And Antigenic Changes That Facilitate Immune Escape Seth J. Zost University of Pennsylvania, [email protected] Follow this and additional works at: https://repository.upenn.edu/edissertations Part of the Allergy and Immunology Commons, Immunology and Infectious Disease Commons, Medical Immunology Commons, and the Virology Commons Recommended Citation Zost, Seth J., "Dissecting Human Antibody Responses Against Influenza A Viruses And Antigenic Changes That Facilitate Immune Escape" (2018). Publicly Accessible Penn Dissertations. 3211. https://repository.upenn.edu/edissertations/3211 This paper is posted at ScholarlyCommons. https://repository.upenn.edu/edissertations/3211 For more information, please contact [email protected]. Dissecting Human Antibody Responses Against Influenza A Viruses And Antigenic Changes That Facilitate Immune Escape Abstract Influenza A viruses pose a serious threat to public health, and seasonal circulation of influenza viruses causes substantial morbidity and mortality. Influenza viruses continuously acquire substitutions in the surface glycoproteins hemagglutinin (HA) and neuraminidase (NA). These substitutions prevent the binding of pre-existing antibodies, allowing the virus to escape population immunity in a process known as antigenic drift. Due to antigenic drift, individuals can be repeatedly infected by antigenically distinct influenza strains over the course of their life. Antigenic drift undermines the effectiveness of our seasonal influenza accinesv and our vaccine strains must be updated on an annual basis due to antigenic changes. In order to understand antigenic drift it is essential to know the sites of antibody binding as well as the substitutions that facilitate viral escape from immunity. -
Zika and Ebola Assays for Droplet Digital PCR Systems
Fast, Accurate, and High-Sensitivity Virus Detection: Zika and Ebola Assays for Droplet Digital PCR Systems Dianna Maar, Nick Heredia, Madhuri Ganta, Carolyn Reifsnyder Digital Biology Center, Bio-Rad Laboratories, Pleasanton, CA. Droplet Digital PCR Bulletin 7111 Abstract Virus quantification and detection are critical for effectively identifying, monitoring, and mitigating viruses. Viral infections can ebb and flow seasonally in the population or spread rapidly in a seemingly sudden and intense outbreak, such as the recent outbreaks of Zika and Ebola viruses. During such outbreaks, testing becomes important for understanding and managing the spread and treatment of that virus. Sensitivity and specificity are important for responding effectively. However, RNA viruses, such as Ebola and Zika, have high variability and need to be detected in high backgrounds of DNA/RNA. Droplet Digital PCR (ddPCR) is a useful tool for viral detection, offering several key advantages over qPCR alone; for example, ddPCR enables accurate quantification of standards for qPCR. Additionally, ddPCR can verify the accuracy of a qPCR assay for cases where the virus contains sequence variants, which is common in RNA viruses. Ultimately, for low-level quantification, digital PCR provides easy, accurate results with high confidence. Droplet Digital PCR results with the new Zika and Ebola ddPCR assays are shown and discussed. Introduction Quantifying and Detecting Zika and Ebola with ddPCR When a viral outbreak occurs it is important to be able to In 2007 the first recorded outbreak of Zika occurred. In 2015 rapidly detect and monitor the virus accurately. Droplet Digital large outbreaks occurred in Brazil. Zika virus is spread mostly PCR (ddPCR) technology is ideal for detecting and quantifying by mosquitos (Aedes aegypti and Aedes albopictus). -
Quantitative Real-Time PCR
Current PCR http://www.horizonpress.com/pcrbooks Quantitative Real-Time PCR N. A. Saunders Abstract Unlike classical end-point analysis PCR, real-time PCR provides the data required for quantification of the target nucleic acid. The results can be expressed in absolute terms by reference to external quantified standards or in relative terms compared to another target sequence present within the sample. Absolute quantification requires that the efficiency of the amplification reaction is the same in all samples and in the external quantified standards. Consequently, it is important that the efficiency of the PCR does not vary greatly due to minor differences between samples. Careful optimisation of the PCR conditions is therefore required. The use of probes in quantitative real- time PCR improves its performance and a range of suitable systems is now available. Generally quantitative real-time assays have excellent performance characteristics including a wide dynamic range, high sensitivity and accuracy. This has led to their use in a wide range of applications and two examples are presented. Viral quantification is now an important factor in the control of infection. The problems associated with virus quantification in cytomegalovirus (HCMV) infection are similar to those presented by other viruses. Quantitative PCR is finding an increasing role in the diagnosis of cancer. The assessment of c-erbB2/Her2/neu gene duplication is useful in predicting the disease http://www.horizonpress.com Current PCR http://www.horizonpress.com/pcrbooks prognosis in breast cancer. Several different real-time quantitative PCR protocols are available for these applications and have been applied successfully to their respective diseases. -
Diagnostic Potential of the Haemagglutination
Bulgarian Journal of Veterinary Medicine (2007), 10 , N o 3, 169 −178 DIAGNOSTIC POTENTIAL OF THE HAEMAGGLUTINATION INHIBITION TEST, THE IMMUNODIFFUSION TEST AND ELISA FOR DETECTION OF ANTIBODIES IN CHICKENS, INTRAVENOUSLY INFECTED WITH A/DUCK/BULGARIA/05 H6N2 AVIAN INFLUENZA VIRUS ISOLATE I. S. ZARKOV Faculty of Veterinary Medicine, Trakia University, Stara Zagora, Bulgaria Summary Zarkov, I., 2007. Diagnostic potential of the haemagglutination inhibition test, the immuno- diffusion test and ELISA for detection of antibodies in chickens, intravenously infected with A/duck/Bulgaria/05 H6N2 avian influenza virus isolate. Bulg. J. Vet. Med. , 10 , No 3, 169 −178. After experimental infection of chickens with an avian influenza viral isolate A/duck/Bulgaria/05 H6N2, the potential of the haemagglutination inhibition test (HIT), the immunodiffusion test (IDT) and enzyme-linked immunosorbent assay (ELISA) for antibody detection was evaluated. The results evidenced that in birds, haemagglutinins, precipitins and IgG antibodies, detectable with ELISA, were formed. The percentage of chickens with subtype-specific antibodies was the highest by the 21 st day of infection (100 %), followed by the 14 th (66.7 %) and the 28 th (55.6 %) days, and was the lowest by the 7 th day (44.4 %). Serum titres ranged between 1:4 and 1:256 with predomination of 1:8 and 1:16 titres (29.2 % each). The mean arithmetic titre for the experiment was 1:38.2. The highest percentage of chickens with precipitins was observed by the 14th day (55.6 %) followed by the 7 th , 21 st and the 28 th days with 33.3 % each. -
Detection and Quantification of Classic and Emerging Viruses by Skimmed
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by CONICET Digital water research xxx (2013) 1e14 Available online at www.sciencedirect.com journal homepage: www.elsevier.com/locate/watres Detection and quantification of classic and emerging viruses by skimmed-milk flocculation and PCR in river water from two geographical areas Byron Calgua a, Tulio Fumian b, Marta Rusin˜ola, Jesus Rodriguez-Manzano a, Viviana A. Mbayed c, Silvia Bofill-Mas a, Marize Miagostovich b, Rosina Girones a,* a Department of Microbiology, Faculty of Biology, University of Barcelona, Av. Diagonal 643, Barcelona 08028, Spain b Laboratory of Comparative and Environmental Virology, Oswaldo Cruz Institute, Avenida Brasil 4365, Rio de Janeiro, Brazil c Laboratory of Virology, Faculty of Pharmacy and Biochemistry, University of Buenos Aires, Junı´n 956, Buenos Aires, Argentina article info abstract Article history: Molecular techniques and virus concentration methods have shown that previously un- Received 24 September 2012 known viruses are shed by humans and animals, and may be transmitted by sewage- Received in revised form contaminated water. In the present study, 10-L river-water samples from urban areas in 16 February 2013 Barcelona, Spain and Rio Janeiro, Brazil, have been analyzed to evaluate the viral Accepted 21 February 2013 dissemination of human viruses, validating also a low-cost concentration method for virus Available online xxx quantification in fresh water. Three viral groups were analyzed: (i) recently reported vi- ruses, klassevirus (KV), asfarvirus-like virus (ASFLV), and the polyomaviruses Merkel cell Keywords: (MCPyV), KI (KIPyV) and WU (WUPyV); (ii) the gastroenteritis agents noroviruses (NoV) and Emerging virus rotaviruses (RV); and (iii) the human fecal viral indicators in water, human adenoviruses Polyomavirus (HAdV) and JC polyomaviruses (JCPyV). -
Safety and Immunogenicity of a Baculovirus- Expressed Hemagglutinin Influenza Vaccine a Randomized Controlled Trial
PRELIMINARY COMMUNICATION Safety and Immunogenicity of a Baculovirus- Expressed Hemagglutinin Influenza Vaccine A Randomized Controlled Trial John J. Treanor, MD Context A high priority in vaccine research is the development of influenza vaccines Gilbert M. Schiff, MD that do not use embryonated eggs as the substrate for vaccine production. Frederick G. Hayden, MD Objective To determine the dose-related safety, immunogenicity, and protective ef- ficacy of an experimental trivalent influenza virus hemagglutinin (rHA0) vaccine pro- Rebecca C. Brady, MD duced in insect cells using recombinant baculoviruses. C. Mhorag Hay, MD Design, Setting, and Participants Randomized, double-blind, placebo-controlled Anthony L. Meyer, BS clinical trial at 3 US academic medical centers during the 2004-2005 influenza season Jeanne Holden-Wiltse, MPH among 460 healthy adults without high-risk indications for influenza vaccine. Hua Liang, PhD Interventions Participants were randomly assigned to receive a single injection of saline placebo (n=154); 75 µg of an rHA0 vaccine containing 15 µg of hemagglutinin Adam Gilbert, PhD from influenza A/New Caledonia/20/99(H1N1) and influenza B/Jiangsu/10/03 virus Manon Cox, PhD and 45 µg of hemagglutinin from influenza A/Wyoming/3/03(H3N2) virus (n=153); or 135 µg of rHA0 containing 45 µg of hemagglutinin each from all 3 components LL CURRENTLY LICENSED IN- (n=153). Serum samples were taken before and 30 days following immunization. fluenza vaccines in the United Main Outcome Measures Primary safety end points were the rates and severity of States are produced in em- solicited and unsolicited adverse events. Primary immunogenicity end points were the bryonated hen’s eggs. -
Biosafety Recommendations for Work with Influenza Viruses Containing a Hemagglutinin from the A/Goose/Guangdong/1/96 Lineage
Morbidity and Mortality Weekly Report Recommendations and Reports / Vol. 62 / No. 6 June 28, 2013 Biosafety Recommendations for Work with Influenza Viruses Containing a Hemagglutinin from the A/goose/Guangdong/1/96 Lineage U.S. Department of Health and Human Services Centers for Disease Control and Prevention Recommendations and Reports CONTENTS Introduction ............................................................................................................2 Background .............................................................................................................2 Guidelines for Working with Influenza Viruses Containing an HA from the A/goose/Guangdong/1/96 Lineage ..................................3 Conclusion ...............................................................................................................6 References ...............................................................................................................7 Front cover photo: Transmission electron micrograph of avian influenza A H5N1 viruses (gold) grown in Madin-Darby canine kidney (MDCK) cells (green). The MMWR series of publications is published by the Office of Surveillance, Epidemiology, and Laboratory Services, Centers for Disease Control and Prevention (CDC), U.S. Department of Health and Human Services, Atlanta, GA 30333. Suggested Citation: Centers for Disease Control and Prevention. [Title]. MMWR 2013;62(No. RR-#):[inclusive page numbers]. Centers for Disease Control and Prevention Thomas R. Frieden, MD, MPH, Director -
Autocatalytic Activation of Influenza Hemagglutinin
University of Pennsylvania ScholarlyCommons Department of Chemical & Biomolecular Departmental Papers (CBE) Engineering December 2006 Autocatalytic Activation of Influenza Hemagglutinin Jeong H. Lee University of Pennsylvania Mark Goulian University of Pennsylvania Eric T. Boder University of Pennsylvania, [email protected] Follow this and additional works at: https://repository.upenn.edu/cbe_papers Recommended Citation Lee, J. H., Goulian, M., & Boder, E. T. (2006). Autocatalytic Activation of Influenza Hemagglutinin. Retrieved from https://repository.upenn.edu/cbe_papers/83 Postprint version. Published in Journal of Molecular Biology, Volume 364, Issue 3, December 2006, pages 275-282. Publisher URL: http://dx.doi.org/10.1016/j.jmb.2006.09.015 This paper is posted at ScholarlyCommons. https://repository.upenn.edu/cbe_papers/83 For more information, please contact [email protected]. Autocatalytic Activation of Influenza Hemagglutinin Abstract Enveloped viruses contain surface proteins that mediate fusion between the viral and target cell membranes following an activating stimulus. Acidic pH induces the influenza virus fusion protein hemagglutinin (HA) via irreversible refolding of a trimeric conformational state leading to exposure of hydrophobic fusion peptides on each trimer subunit. Herein, we show that cells expressing fowl plague virus HA demonstrate discrete switching behavior with respect to the HA conformational change. Partially activated states do not exist at the scale of the cell, activation of HA leads to aggregation of cell surface trimers, and newly synthesized HA refold spontaneously in the presence of previously activated HA. These observations imply a feedback mechanism involving self-catalyzed refolding of HA and thus suggest a mechanism similar to the autocatalytic refolding and aggregation of prions. -
Serological Methods in the Identification and Characterization of Viruses
CHAPTER 4 Serological Methods in the Identification and Characterization of Viruses M. H. V. Van Regenmortel Laboratoire de Virologie Institut de Biologie Mo!eculaire et Cellulaire 67000 Strasbourg, France 1. INTRODUCTION The purpose of this chapter is to present an integrated view of the various serological techniques that have been used in virology. The accent will be placed on the principles that govern each type of test and on the general applicability of the different serological techniques in all fields of virus research. In recent years, advances in serological tech niques have sometimes been applied in only one area of virology, although they could have been equally useful to workers studying other groups of viruses. No doubt this stems from the host-oriented approach that has guided the compartmentation of virology into separate fields of specialization. When it comes to serological properties, however, the similarities between animal, insect, bacterial, and plant viruses are paramount. The same immunochemical principles govern the in vitro serological reactions of all viral antigens, and much of general interest can be learned from the findings obtained with each particular group of viruses. An attempt will be made here to emphasize the general validity of specific experimental procedures. A number of recent reviews restricted to the serology of particular groups of viruses are available 183 H. Fraenkel-Conrat et al. (eds.), Comprehensive Virology © Plenum Press, New York 1981 184 Chapter 4 (Cowan, 1973; Schmidt and Lennette, 1973; Ball, 1974; Kurstak and Morisset, 1974; Burns and Allison, 1975; Mazzone and Tignor, 1976; Mayr et al., 1977; Tyrrell, 1978; Van Regenmortel, 1978; Cooper, 1979). -
ACRONYM & GLOSSARY LIST - Revised 9/2008
Survey & Certification Emergency Preparedness Initiative – All Hazards EMERGENCY PREPAREDNESS ACRONYM & GLOSSARY LIST - Revised 9/2008 ACRONYMS AAL Authorized Access List AAR After-Action Report ACE Army Corps of Engineers ACIP Advisory Committee on Immunization Practices ACL Access Control List ACLS Advanced Cardiac Life Support ACF Administration for Children and Families (HHS) ACS Alternate Care Site ADP Automated Data Processing AFE Annual Frequency Estimate AHRQ Agency for Healthcare Research and Quality (HHS) AIE Annual Impact Estimate AIS Automated Information System AISSP Automated Information Systems Security Program AMSC American Satellite Communications ANG Air National Guard ANSI American National Standards Institute AO Accrediting Organization AoA Administration on Aging (HHS) APE Assistant Secretary for Planning and Evaluation (HHS) APF Authorized Program Facility APHL Association of Public Health Laboratories ARC American Red Cross ARES Amateur Radio Emergency Service ARF Agency Request Form ARO Annualized Rate of Occurrence ASAM Assistant Secretary for Administration & Management (HHS) ASC Ambulatory Surgical Center ASC Accredited Standards Committee ASH Assistant Secretary for Health (HHS) ASL Assistant Secretary for Legislation (HHS) ASPA Assistant Secretary for Public Affairs (HHS) ASPE Assistant Secretary for Planning & Evaluation (HHS) ASPR Assistant Secretary for Preparedness & Response (HHS) ASRT Assistant Secretary for Resources & Technology (HHS) ATSDR Agency for Toxic Substances & Disease Registry (HHS) BARDA