The Whale Shark Genome Reveals Patterns of Vertebrate Gene Family Evolution
bioRxiv preprint doi: https://doi.org/10.1101/685743; this version posted June 28, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. The whale shark genome reveals patterns of vertebrate gene family evolution 1 2 3 4 4,5 Milton Tan *, Anthony K. Redmond , Helen Dooley , Ryo Nozu , Keiichi Sato , Shigehiro 6 7 7 8 9 Kuraku , Sergey Koren , Adam M. Phillippy , Alistair D.M. Dove , Timothy D. Read 1. Illinois Natural History Survey at University of Illinois Urbana-Champaign, Champaign, IL, USA. 2. Smurfit Institute of Genetics, Trinity College Dublin, Dublin, Ireland. 3. University of Maryland School of Medicine, Institute of Marine & Environmental Technology, Baltimore, MD, USA. 4. Okinawa Churashima Research Center, Okinawa Churashima Foundation, Okinawa, Japan. 5. Okinawa Churaumi Aquarium, Motobu, Okinawa, Japan 6. RIKEN Center for Biosystems Dynamics Research (BDR), RIKEN, Kobe, Japan. 7. National Human Genome Research Institute, Bethesda, MD, USA. 8. Georgia Aquarium, Atlanta, GA, USA. 9. Department of Infectious Diseases, Emory University School of Medicine, Atlanta, GA, USA. Keywords: fish, Elasmobranchii, Chondrichthyes, Cartilaginous Fishes, Gnathostomata, comparative genomics, innate immunity, gigantism Abstract Due to their key phylogenetic position, cartilaginous fishes, which includes the largest fish species Rhincodon typus (whale shark), are an important vertebrate lineage for understanding the origin and evolution of vertebrates. However, until recently, this lineage has been understudied in vertebrate genomics. Using newly-generated long read sequences, we produced the best gapless cartilaginous fish genome assembly to date.
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