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Phd. Thesis Sana Jabeen.Pdf
ECTOMYCORRHIZAL FUNGAL COMMUNITIES ASSOCIATED WITH HIMALAYAN CEDAR FROM PAKISTAN A dissertation submitted to the University of the Punjab in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY in BOTANY by SANA JABEEN DEPARTMENT OF BOTANY UNIVERSITY OF THE PUNJAB LAHORE, PAKISTAN JUNE 2016 TABLE OF CONTENTS CONTENTS PAGE NO. Summary i Dedication iii Acknowledgements iv CHAPTER 1 Introduction 1 CHAPTER 2 Literature review 5 Aims and objectives 11 CHAPTER 3 Materials and methods 12 3.1. Sampling site description 12 3.2. Sampling strategy 14 3.3. Sampling of sporocarps 14 3.4. Sampling and preservation of fruit bodies 14 3.5. Morphological studies of fruit bodies 14 3.6. Sampling of morphotypes 15 3.7. Soil sampling and analysis 15 3.8. Cleaning, morphotyping and storage of ectomycorrhizae 15 3.9. Morphological studies of ectomycorrhizae 16 3.10. Molecular studies 16 3.10.1. DNA extraction 16 3.10.2. Polymerase chain reaction (PCR) 17 3.10.3. Sequence assembly and data mining 18 3.10.4. Multiple alignments and phylogenetic analysis 18 3.11. Climatic data collection 19 3.12. Statistical analysis 19 CHAPTER 4 Results 22 4.1. Characterization of above ground ectomycorrhizal fungi 22 4.2. Identification of ectomycorrhizal host 184 4.3. Characterization of non ectomycorrhizal fruit bodies 186 4.4. Characterization of saprobic fungi found from fruit bodies 188 4.5. Characterization of below ground ectomycorrhizal fungi 189 4.6. Characterization of below ground non ectomycorrhizal fungi 193 4.7. Identification of host taxa from ectomycorrhizal morphotypes 195 4.8. -
Morchella Esculenta</Em>
Journal of Bioresource Management Volume 3 Issue 1 Article 6 In Vitro Propagation of Morchella esculenta and Study of its Life Cycle Nazish Kanwal Institute of Natural and Management Sciences, Rawalpindi, Pakistan Kainaat William Bioresource Research Centre, Islamabad, Pakistan Kishwar Sultana Institute of Natural and Management Sciences, Rawalpindi, Pakistan Follow this and additional works at: https://corescholar.libraries.wright.edu/jbm Part of the Biodiversity Commons, and the Biology Commons Recommended Citation Kanwal, N., William, K., & Sultana, K. (2016). In Vitro Propagation of Morchella esculenta and Study of its Life Cycle, Journal of Bioresource Management, 3 (1). DOI: https://doi.org/10.35691/JBM.6102.0044 ISSN: 2309-3854 online This Article is brought to you for free and open access by CORE Scholar. It has been accepted for inclusion in Journal of Bioresource Management by an authorized editor of CORE Scholar. For more information, please contact [email protected]. In Vitro Propagation of Morchella esculenta and Study of its Life Cycle © Copyrights of all the papers published in Journal of Bioresource Management are with its publisher, Center for Bioresource Research (CBR) Islamabad, Pakistan. This permits anyone to copy, redistribute, remix, transmit and adapt the work for non-commercial purposes provided the original work and source is appropriately cited. Journal of Bioresource Management does not grant you any other rights in relation to this website or the material on this website. In other words, all other rights are reserved. For the avoidance of doubt, you must not adapt, edit, change, transform, publish, republish, distribute, redistribute, broadcast, rebroadcast or show or play in public this website or the material on this website (in any form or media) without appropriately and conspicuously citing the original work and source or Journal of Bioresource Management’s prior written permission. -
(<I>Morchella</I>) Species in the Elata Subclade
MYCOTAXON ISSN (print) 0093-4666 (online) 2154-8889 © 2016. Mycotaxon, Ltd. April–June 2016—Volume 131, pp. 467–482 http://dx.doi.org/10.5248/131.467 Four new morel (Morchella) species in the elata subclade (M. sect. Distantes) from Turkey Hatıra Taşkın1*, Hasan Hüseyİn Doğan2, Saadet Büyükalaca1, Philippe Clowez3, Pierre-Arthur Moreau4 & Kerry O’Donnell5 1Department of Horticulture, Faculty of Agriculture, University of Çukurova, Adana, 01330, Turkey 2Department of Biology, Faculty of Science, University of Selçuk, Konya, 42079, Turkey 356 place des Tilleuls, F-60400 Pont-l’Evêque, France 4 EA 4483, UFR Pharmacie, Université de Lille, F-59000 Lille cedex, France 5Mycotoxin Prevention and Applied Mycology Research Unit, National Center for Agricultural Utilization Research, US Department of Agriculture, Agricultural Research Service, 1815 North University Street, Peoria, Illinois 61604, USA * Correspondence to: [email protected] Abstract—Four Turkish Morchella species identified in published multilocus molecular phylogenetic analyses are described here as new, using detailed macro- and microscopic data: M. mediterraneensis (Mel-27), M. fekeensis (Mel-28), M. magnispora (Mel-29), and M. conifericola (Mel-32). A distribution map of morels identified to date in Turkey is also provided. Key words—Ascomycota, conservation, edible fungi, Morchellaceae, systematics, taxonomy Introduction True morels (Morchella), among the most highly prized edible macrofungi, are classified in the Morchellaceae (Pezizales, Ascomycota). This monophyletic family also includes Disciotis, Kalapuya, Fischerula, Imaia, Leucangium, and Verpa (O’Donnell et al. 1997, Trappe et al. 2010). Several multilocus DNA sequence-based analyses of Morchella that employed phylogenetic species recognition based on genealogical concordance (GCPSR sensu Taylor et al. 2000) have revealed that most species exhibit continental endemism and provincialism in the northern hemisphere (Du et al. -
Spore Print 2005 No
Spore Print 2005 No. 1 Quarterly Newsletter of the Edmonton Mycological Society A Confirmation of Spring – the Delicious Morel Mushroom by Loretta Puckrin (Morchellaceae - Morchella ) large groups. An area might be Whether you call them ‘morels’ covered in morels but you will still (Canada), morille (France), have several steps between speisemorchel (Germany), spugnoal pickings unlike many other edibles bruna (Italy), or colmenilla (Spain) grow in clumps. In spite of this you are talking about the early spread-out nature, morels are one edible mushroom that starts the of the few mushrooms that are wild mushroom picking season. picked commercially. Wind is very Being a very distinctive mushroom, important in the spreading of the morels are picked very freely morel spores, so if you find a group by many people who would of morels check downwind of your normally stay away from wild current location and you will likely mushrooms. It doesn’t hurt that find more. the morel family (Morchella to give Morels tend to appear early in them their proper name) tastes the spring, although they do have a very good. longer growing season. With the Morels grow in old-growth forest floors being covered in brown A morel mushroom with its distinctive cap which is forest, abandoned orchards, dead leaves, the morel can be attached to the stem or stipe. Notice the vertical banding gardens, along roads and on sandy difficult to find. A general rule of and the ridges that are darker than the recessed parts. stream banks. They are also known thumb is to look for morels when common morel (Morchella as a mushroom that loves to grow the crocus flower is beginning to esculenta) is normally found at after a fire. -
Morchella (Kuzugöbeği) Cinsi Genetik Çeşitliliğine Katkilar
Ç.Ü Fen ve Mühendislik Bilimleri Dergisi Yıl 2019 Cilt: 38-2 MOLEKÜLER YÖNTEMLERİN KULLANIMI İLE TÜRKİYE MORCHELLA (KUZUGÖBEĞİ) CİNSİ GENETİK ÇEŞİTLİLİĞİNE KATKILAR Modeling And Comparison Of Conventional And Active Stop Voltage Regulators İsmail KESKİNKILIÇ, Hatıra TAŞKIN Biyoteknoloji Anabalim Dalı ÖZET Sunulan bu çalışmada, Türkiye Morchella (kuzugöbeği) cinsi çeşitliliğine DNA dizi analizlerine dayalı moleküler tekniklerin kullanımı ile katkılar sunulması hedeflenmiştir. Daha önce Türkiye’de yapılan çalışmalarda Morchella cinsinde önemli bir çeşitlilik yakalanmıştır. Bu çalışma ile bu çeşitliliğin artırılmasına çalışılmıştır. Türkiye’nin farklı bölge ve illerinden toplanan kuzugöbeği mantarı örnekleri ile yeni bir koleksiyon oluşturulmuştur. Bu koleksiyon, farklı gen bölgelerinin (ITS rDNA, 28S rDNA, EF-1α, RPB1 ve RPB2) DNA dizi analizlerine dayalı yöntemle analizlenmiştir. Filogenetik ağaçlar, MEGA programında Maximum Likelihood (ML) analizi ile oluşturulmuştur. Çalışma sonucunda, koleksiyon içerisinde; Morchella dunensis, M. tridentina, M. importuna, M. eximia, M. dunalii, M. mediterraneensis, M. deliciosa, M. pulchella ve Mel-13 türleri tespit edilmiştir. Koleksiyonda yer alan bazı örneklerin tür adları, analizlenen tüm gen bölgelerinde tüm örnekler için kaliteli DNA dizileri elde edilemediği için sonraya bırakılmıştır. Bu örnekler; M. laurentiana, M. eohespera veya M. purpurascens türleri ile yüksek benzerlik göstermişlerdir. Filogenetik olarak bu kardeş türlerin ayırımı zor olmaktadır. Ayrıca koleksiyonda yer alan M. steppicola’nın -
Heikki Aisala: Sensory Properties and Underlying Chemistry of Finnish
DOCTORAL THESES IN FOOD SCIENCES AT THE UNIVERSITY OF TURKU Food Chemistry Sensory Properties and Underlying Chemistry of Finnish Edible Wild Mushrooms HEIKKI AISALA Food Chemistry and Food Development Department of Biochemistry and Functional Foods Forum TURKU, FINLAND – 2019 Food Chemistry and Food Development Department of Biochemistry University of Turku, Finland Supervised by Associate Professor Mari Sandell, Ph.D. Functional Foods Forum University of Turku Turku, Finland Research Professor Anu Hopia, Ph.D. Functional Foods Forum University of Turku Turku, Finland Associate Professor Kaisa Linderborg, Ph.D. Department of Biochemistry University of Turku Turku, Finland Reviewed by Professor Paula Varela-Tomasco, Ph.D. Nofima AS and Faculty of Chemistry, Biotechnology and Food Science Norwegian University of Life Sciences Ås, Norway Professor Dr ir Wender L.P. Bredie Department of Food Science, Faculty of Science University of Copenhagen Frederiksberg C, Denmark Opponent Professor Lisa Methven, Ph.D. Department of Food and Nutritional Sciences University of Reading Reading, United Kingdom Research director Professor Baoru Yang, Ph.D. Department of Biochemistry University of Turku Turku, Finland The originality of this dissertation has been checked in accordance with the University of Turku quality assurance system using the Turnitin OriginalityCheck service. ISBN 978-951-29-7613-3 (print) ISBN 978-951-29-7614-0 (pdf) ISSN 2323-9395 (print) ISSN 2323-9409 (pdf) Painosalama Oy – Turku, Finland 2019 Table of Contents TABLE OF CONTENTS -
Abdullah ÇOLAK.Pdf
T.C. KASTAMONU ÜNİVERSİTESİ FEN BİLİMLERİ ENSTİTÜSÜ KASTAMONU YÖRESİNDE TESPİT EDİLEN BAZI KUZUGÖBEĞİ TÜRLERİNİN MOLEKÜLER VE KİMYASAL ÖZELLİKLERİNİN BELİRLENMESİ Abdullah ÇOLAK Danışman : Prof.Dr. Sabri ÜNAL Jüri Üyesi : Prof. Dr. Erol AKKUZU Jüri Üyesi : Doç. Dr. Yafes YILDIZ YÜKSEK LİSANS TEZİ ORMAN MÜHENDİSLİĞİ ANA BİLİM DALI KASTAMONU – 2019 ÖZET Yüksek Lisans KASTAMONU YÖRESİNDE TESPİT EDİLEN BAZI KUZUGÖBEĞİ TÜRLERİNİN MOLEKÜLER VE KİMYASAL ÖZELLİKLERİNİN BELİRLENMESİ Abdullah ÇOLAK Kastamonu Üniversitesi Fen Bilimleri Enstitüsü Orman Mühendisliği Ana Bilim Dalı Danışman: Prof. Dr. Sabri ÜNAL Morchella mantarı genel olarak her yerde yetişebilen mantarlar olarak tanımlanmaktadır. Çalışma alanını oluşturan Kastamonu ilinde farklı lokasyonlarda çam, göknar ve meşe ormanlarında 600-1550 m rakımlar arasında Morchella mantarı tespit edilmiştir. Çalışmaya konu Kastamonu ilinde 2018 yılının Nisan-Mayıs aylarında Kastamonu Merkez, Ağlı, Araç, Bozkurt, Daday, Devrekani, Hanönü, Taşköprü, Tosya ilçelerinde daha önceki yıllarda Morchella tespit edilen mevkilerde arazi çalışması yapılmış olup 6 farklı lokasyonda Morchella mantarı bulunmuştur. Morfolojik olarak birbirinden farklı olan bu 6 farklı örneğin moleküler analizi sonucunda Morchella elata ve Morchella importuna olmak üzere 2 farklı tür olduğu ortaya konmuştur. Bu çalışmada Kastamonu yöresinde çeşitli lokasyonlarda yetişen Morchella türlerinin morfolojik ve moleküler tanımlamaları yapılmış, içerdiği fenolik bileşikler ile antioksidan özellikleri araştırılmıştır. Buna göre Küre Kösreli mevkisinden toplanan ve KG-1 olarak isimlendirilen örneklerde yüksek antioksidan aktivite ve en yüksek fenolik bileşik içeriği tespit edilmiştir. Anahtar Kelimeler: Kastamonu, Kuzugöbeği, Morchella 2019, 51 sayfa Bilim Kodu: 1205 iii ABSTRACT MSc. Thesis DETERMINATION OF MOLECULAR AND CHEMICAL PROPERTIES OF SOME NUGS SPECIES IN KASTAMONU AREA Abdullah ÇOLAK Kastamonu University Graduate School of Natural and Applied Sciences Department of Forest Engineering Supervisor: Prof. -
Distribution and Ecology of the Morels and False Morels of Iowa
Journal of the Iowa Academy of Science: JIAS Volume 105 Number Article 3 1998 Distribution and Ecology of the Morels and False Morels of Iowa L. H. Tiffany Iowa State University G. Knaphus Iowa State Universtiy D. M. Huffman Central College Let us know how access to this document benefits ouy Copyright © Copyright 1998 by the Iowa Academy of Science, Inc. Follow this and additional works at: https://scholarworks.uni.edu/jias Part of the Anthropology Commons, Life Sciences Commons, Physical Sciences and Mathematics Commons, and the Science and Mathematics Education Commons Recommended Citation Tiffany, L. H.; Knaphus, G.; and Huffman, D. M. (1998) "Distribution and Ecology of the Morels and False Morels of Iowa," Journal of the Iowa Academy of Science: JIAS, 105(1), 1-15. Available at: https://scholarworks.uni.edu/jias/vol105/iss1/3 This Research is brought to you for free and open access by the Iowa Academy of Science at UNI ScholarWorks. It has been accepted for inclusion in Journal of the Iowa Academy of Science: JIAS by an authorized editor of UNI ScholarWorks. For more information, please contact [email protected]. JAN 2 3 2002 Jour. Iowa Acad. Sci. 105(1):1-15, 1998 Distribution and Ecology of the Morels and False Morels of Iowa L. H. TIFFANY1, G. KNAPHUS1, and D. M. HUFFMAN2 1Department of Botany, Iowa State University, Ames, Iowa 50011-1020 2Department of Biology, Central College, Pella, Iowa 50219-1901 The distribution, time of fruiting and habitats of morels and false morels in Iowa were documented during a 10 year survey (1984- 1993). -
Ecology and Management of Morels Harvested from the Forests of Western North America
United States Department of Ecology and Management of Agriculture Morels Harvested From the Forests Forest Service of Western North America Pacific Northwest Research Station David Pilz, Rebecca McLain, Susan Alexander, Luis Villarreal-Ruiz, General Technical Shannon Berch, Tricia L. Wurtz, Catherine G. Parks, Erika McFarlane, Report PNW-GTR-710 Blaze Baker, Randy Molina, and Jane E. Smith March 2007 Authors David Pilz is an affiliate faculty member, Department of Forest Science, Oregon State University, 321 Richardson Hall, Corvallis, OR 97331-5752; Rebecca McLain is a senior policy analyst, Institute for Culture and Ecology, P.O. Box 6688, Port- land, OR 97228-6688; Susan Alexander is the regional economist, U.S. Depart- ment of Agriculture, Forest Service, Alaska Region, P.O. Box 21628, Juneau, AK 99802-1628; Luis Villarreal-Ruiz is an associate professor and researcher, Colegio de Postgraduados, Postgrado en Recursos Genéticos y Productividad-Genética, Montecillo Campus, Km. 36.5 Carr., México-Texcoco 56230, Estado de México; Shannon Berch is a forest soils ecologist, British Columbia Ministry of Forests, P.O. Box 9536 Stn. Prov. Govt., Victoria, BC V8W9C4, Canada; Tricia L. Wurtz is a research ecologist, U.S. Department of Agriculture, Forest Service, Pacific Northwest Research Station, Boreal Ecology Cooperative Research Unit, Box 756780, University of Alaska, Fairbanks, AK 99775-6780; Catherine G. Parks is a research plant ecologist, U.S. Department of Agriculture, Forest Service, Pacific Northwest Research Station, Forestry and Range Sciences Laboratory, 1401 Gekeler Lane, La Grande, OR 97850-3368; Erika McFarlane is an independent contractor, 5801 28th Ave. NW, Seattle, WA 98107; Blaze Baker is a botanist, U.S. -
Aportación Al Catálogo Micológico De La Provincia De Cuenca I: Ascomycetes
20170820-22-0906 APORTACIÓN AL CATALOGO MICOLÓGICO DE LA PROVINCIA DE CUENCA I: ASCOMYCETES AUTOR: JAVIER MARCOS MARTÍNEZ* COLABORADORES: JOSÉ MARÍA GARCÍA CARDO, JOSÉ ANGEL MARTÍNEZ MARTÍNEZ, JAIRO ABARCA CAÑADA, SERGIO ABARCA CAÑADA, JOSÉ MORA GOMEZ & EMILIO JOSÉ SALVADOR FERNÁNDEZ. *C/ Camino Cañete, nº 6. 5ºB. 16004. Cuenca (España) Email: [email protected] RESUMEN: MARCOS, J. (2017). Aportación al catálogo micológico de la provincia de Cuenca I: Ascomycetes. A continuación se citan en total 256 especies de ascomicetes. Todos ellos son primera cita para la provincia, a excepción de 11 taxones (Anthracobia melaloma, Lophodermium foliicola, Lophodermium pinastri, Hypotarzetta insignis, Lamprospora carbonicola, Peziza berthetiana, Peziza lobulata, Stemphylium vesicarium, Tricharina gilva, Tuber melanosporum y Tuber rufum) previamente citados por otros autores. Dos de ellos (Pulvinula johannis y Symphiosyrinia clematidis) son primera cita para España y otro es tercera cita nacional (Hypoxylon sublimbatum). Entre los taxones presentados merece la pena destacarse: Hysterobrevium smilacis, Eutryblidiella hysterina, Penicillium vulpinum, Pezicula sepium, Pyrenopeziza rubi, Phaeohelotium tamaricis, Gemmina gemmarum, Calycina claroflava, Lachnum diminutum, Lachnum winteri, Vibrissea truncorum, Mellitiosporella pulchella, Therrya fuckelii, Ciboria brunneorufa, Rutstroemia coracina, Ascobolus brassicae, Desmazierella acicola, Morchella rufobrunnea, Pachyella violaceonigra, Peziza moravecii, Peziza muscicola, Genea tuberculata, Terfezia -
A Multigene Molecular Phylogenetic Assessment of True Morels (Morchella) in Turkey
Fungal Genetics and Biology 47 (2010) 672–682 Contents lists available at ScienceDirect Fungal Genetics and Biology journal homepage: www.elsevier.com/locate/yfgbi A multigene molecular phylogenetic assessment of true morels (Morchella) in Turkey Hatıra Tasßkın a, Saadet Büyükalaca a, Hasan Hüseyin Dog˘an b, Stephen A. Rehner c, Kerry O’Donnell d,* a Faculty of Agriculture, Department of Horticulture, University of Çukurova, 01330 Adana, Turkey b Faculty of Science, Department of Biology, University of Selçuk, 42079 Konya, Turkey c Systematic Mycology and Microbiology Laboratory, Agricultural Research Service, United States Department of Agriculture, Beltsville, MD 20705, USA d Bacterial Foodborne Pathogens and Mycology Research Unit, National Center for Agricultural Utilization Research, Agricultural Research Service, United States Department of Agriculture, Peoria, IL 61604, USA article info abstract Article history: A collection of 247 true morels (Morchella spp.) primarily from the Mediterranean and Aegean Regions of Received 30 September 2009 Southern Turkey, were analyzed for species diversity using partial RNA polymerase I (RPB1) and nuclear Accepted 9 May 2010 ribosomal large subunit (LSU) rDNA gene sequences. Based on the result of this initial screen, 62 collec- Available online 24 May 2010 tions representing the full range of genetic diversity sampled were subjected to multigene phylogenetic species recognition based on genealogical concordance (GCPSR). The 62-taxon dataset consisted of partial Keywords: sequences from three nuclear protein-coding genes, RNA polymerase I (RPB1), RNA polymerase II (RPB2), Conservation translation elongation factor (EF1-a), and partial LSU rDNA gene sequences. Phylogenetic analyses of the EF-1a individual and combined datasets, using maximum parsimony (MP) and maximum likelihood (ML), GCPSR ITS rDNA yielded nearly fully resolved phylogenies that were highly concordant topologically. -
Spring 2009 Officers Inside This Issue Volume 18 - No 1 Chester Leathers, Phd President
1 The Arizona Fun Gi - Newsletter of the Arizona Mushroom Club ARIZONA MUSHROOM CLUB and the Foray Facts ARIZONA RARE FRUIT GROWERS ODDS & ENDS Spring is here and our Scouts Terry Joining to share information! AMC Member Holly Nipperus recom- Beckman and Jim Stanczak will be A great opportunity for AMC members mended a mushroom wallet for yourself checking sites. If a foray for Morel * Make plans to attend now* or as a gift for your special fungi friend. mushrooms is set, it will be on short You can find it at: notice. Please check the AMC website for The Arizona Rare Fruit Growers has invited https://www.cartfly.com/bunkyboutique information frequently, more so as the members of The Arizona Mushroom Club scroll down product category menu on weather warms up in the high country in to be their guests at a potluck meeting of the left to wallets. (THANKS HOLLY!) late April through the second week in the two organizations! There will be two, May. short, illustrated lectures on *Growing The 25th New Mexico Mycological Soci- Mushrooms* by Ralph Reynolds, a Club ety Annual Furay is in Taos, Aug. 20- For summer forays, start checking the member from New Mexico, and Dr. Ches- 23+ Unfortunately, this conflicts with website the end of July through ter Leathers, Club President. Several Rare the AMC Foray. But FYI, they do a the second week in September. Fruit Growers are interested in growing vouchering system and collect speci- http://az-mushroom-club.org mushrooms and would like to learn more mens for storage by the Southwest Mu- az_mushroom/AZ_Mushroom_Club_ about fungi and how to grow them.