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Ancient DNA Dataset 2.07.72

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Ancient DNA Dataset 2.07.72 8/27/2021 Ancient DNA Dataset 2.07.72 https://haplogroup.info/ Object‐ID Colloquial‐Skeletal LatitudLongit Sex mtDNA‐comtFARmtDNA‐haplogroup mtDNA‐Haplotree mt‐FT mtree mt‐YFFTDNA‐mt‐Haplotree mt‐Simmt‐S HVS‐I HVS‐II HVS‐NO mt‐SNPs Responsible‐ Y‐DNA Y‐New SNP‐positive SNP‐negative SNP‐dubious NRY Y‐FARY‐Simple YTree Y‐Haplotree‐VY‐Haplotree‐PY‐FTD YFull Y‐YFu ISOGG2019 FTDNA‐Y‐Haplotree Y‐SymY‐Symbol2Responsible‐SNPSNPs AutosomaDamage‐RAssessmenKinship‐Notes Source Method‐Date Date Mean CalBC_top CalBC_bot Age Simplified_Culture Culture_Grouping Label Location SiteID Country Denisova4 FR695060.1 51.4 84.7 M DN1a1 DN1a1 https:/ROOT>HD>DN1>D1a>D1a1 DN L A11914G • C1YFull TMRCA ca. 708,133.1 (549,422.5‐930,979.7) A0000 A0000 A0000 A0000 A0 A0000 PetrbioRxiv2020 84.1–55.2 ka [Douka ‐67700 ‐82150 ‐53250 Adult ma Denisovan Middle Palaeolithic Denisova Cave Russia Denisova8 KT780370.1 51.4 84.7 M DN2 DN2 https:/ROOT>HD>DN2 DN L A11914G • C1YFull TMRCA ca. 706,874.9 (607,187.2‐833,211.4) A0000 A0000‐T A0000‐T A0000‐T A0 A0000 PetrbioRxiv2020 136.4–105.6 ka ‐119050 ‐134450 ‐103650 Adult ma Denisovan Middle Palaeolithic Denisova Cave Russia Spy_final Spy 94a 50.5 4.67 .. ND1b1a1b2* ND1b1a1b2* https:/ROOT>NM>ND>ND1>ND1b>ND1b1>ND1b1a>ND1b1a1>ND1b1a1b>ND1b1a1b2 ND L C6563T * A11YFull TMRCA ca. 369,637.7 (326,137.1‐419,311.0) A000 A000a A000a A000‐T>A000>A000a A0 A000 PetrbioRxiv2020 553719 0.66381 .. PASS (literan/a HajdinjakNature2018 from MeyDirect: 95.4%; IntCal20, OxC39431‐38495 calBCE ‐38972 ‐39431 ‐38495 Neanderthal Late Middle Palaeolithic Spy_Neanderthal.SG Grotte de Spy, Jemeppe‐sur‐Sambre, Namur Belgium El Sidron 1253 FM865409.1 43.4 ‐5.33 ND1b1a* ND1b1a* https:/ROOT>NM>ND>ND1>ND1b>ND1b1>ND1b1a ND L YFull TMRCA ca. 353,265.5 (286,250.7‐449,185.5) A000 A000b A000b A000‐T>A000>A000b A0 A000 PetrbioRxiv2020 43,040 (40,300‐47,05 ‐41090 ‐38350 ‐45100 Neanderthal Late Middle Palaeolithic El Sidrón Cave, Asturias Spain Mezmaiskaya2_finaMezmaiskaya 2 44.2 40 M .. ND1b1a* ND1b1a* https:/ROOT>NM>ND>ND1>ND1b>ND1b1>ND1b1a ND L YFull TMRCA ca. 339,207.2 (274,711.4‐408,161.1A21660 A000 A000b1 A000b1 A000‐T>A000>A000b>A000b1 A0 A000 Mateja Hajdinjak 837728 1.29539 .. PASS (literan/a PetrbioRxiv2020 from HajdinjakDirect: 95.4%; IntCal20, OxC43015‐40206 calBCE ‐41499 ‐43015 ‐40206 Neanderthal Late Middle Palaeolithic Mezmaiskaya2_Neanderthal.SG Mezmaiskaya Cave, Republic of Adygea Russia I10871 LAK93 C13 339 (3), I10 5.86 10.1 .. 0.12 L0a2a1 L0a2a1* https:/L0a2a1* https:/ROOT>NM>RSRS>L0>L0a'b'f'g'k>L0a'b'f'g>L0a'b'g>L0a'g>L0a>L0a2>L0a2a>L0a2a1 L0 L YFull A00 A00* (unrooted, falls outside of pre A00a, A00b, A00c 0.05 A00* A00‐L1087 A‐L1087 A‐L1087 https:/A00* https:/A00* A‐L1087 AA00 FTDNA/YFull (SG 1178281 18.5137 .. PASS (XconCameroon, Shum Laka FaLipsonNature2020 Direct: 95.4%; IntCal20, OxC6058‐5889 calBCE (7 ‐5963 ‐6058 ‐5889 Adolesce Africa_West_Early_HoloceCameroon Early Holocene Cameroon_SMA.SG Shum Laka Burial Unit 2, DouCameroon bab001 2009/008.001, bab002 ‐29.5 31.2 M .. 1 L0d2a1 L0d2a1 https:/L0d2a1 https:/ROOT>NM>RSRS>L0>L0d>L0d1'2>L0d2>L0d2a'b'd>L0d2a>L0d2a1 L0 L Polymorphisms for called hg (against RSRS)*198T HaploFind, PhA1b1b2b1‐M118 A1b1b2b2 L1085, L1130, V171, M32, M190, P289, M144, M118 0.04 A1b1b2 A1b‐M32 A‐M32 A‐M32 https:/A‐M32 https:/A1b1b2b2 A‐PR2921>L1090>V168>V221>L419>M32 A A MartinianobioRx 731333 0.98892 .. PASS (literan/a SchlebuschScience2017 Direct: 95.4%; SHCal20, OxC163 calBCE ‐ 20 calC ‐87 ‐163 20 adult malAfrica_South_Ancient Later Stone Age hunter‐gatherer South_Africa_2000BP.SG shore near Ballito Bay, KwaZulu‐Natal South Africa baa001 2009/007, baa001‐dr, ‐29.5 31.2 M .. 0.02 L0d2c1 L0d2c1 https:/L0d2c1 https:/ROOT>NM>RSRS>L0>L0d>L0d1'2>L0d2>L0d2c>L0d2c1 L0 L Polymorphisms for called hg (against RSRS)*263A HaploFind, P hA1b1b2b1‐M118 A1b1b2b2 L1085, L1130, M13, M202 0.03 A1b1b2 A1b‐M32 A‐M32 A‐M32 https:/A‐M32 https:/A1b1b2b2 A‐PR2921>L1090>V168>V221>L419>M32 A A MartinianobioRx 1181491 12.934 .. PASS (literan/a SchlebuschScience2017 Direct: 95.4%; SHCal20, OxC38 calBCE ‐ 120 calC 62 ‐38 120 juvenile Africa_South_Ancient Later Stone Age hunter‐gatherer South_Africa_1900BP.SG KwaZulu‐Natal South Africa I8830 NV5.01 ‐0.66 36.4 M 8.29 0.13 M1a1b M1a1b https:/M1a1b https:/M>M1'20'51>M1>M1a>M1a1>M1a1b M1 M xBT (Likely A due to A1b1b2b 0.07 A1b1b2 A1b‐M13 A‐M13 A‐M13 https:/A‐M13 https:/A1b1b2b A‐PR2921>L1090>V168>V221>L419>M32>M144>M13 A A MartinianobioRx 111218 0.1006 0.116 PASS (literan/a PrendergastScience2019 Direct: 95.4%; IntCal20, OxC409‐373 calBCE (232 ‐390 ‐409 ‐373 Africa_East_Pastoralist PN (other) Kenya_PastoralN_published Navaisha Burial Ground Kenya I8804 DEL.03.01 ‐0.36 35.7 M 38.9 0.22 L4b2a1 L4b2a1 https:/L4b2a1 https:/ROOT>NM>RSRS>L1'2'3'4'5'6>L2'3'4'5'6>L2'3'4'6>L3'4'6>L3'4>L4>L4b>L4b2>L4b2a>L4b2a1 L4 L A1b1b2; A‐L427 (proA1b1b2b~ 0.07 A1b1b2 A1b‐M13 A‐M13 A‐M13 https:/A‐M13 https:/A1b1b2b~ A‐PR2921>L1090>V168>V221>L419>M32>M144>M13 A A MartinianobioRx 428481 0.49662 0.075 PASS n/a PrendergastScience2019 Direct: 95.4%; IntCal20, OxC757‐423 calBCE (246 ‐626 ‐757 ‐423 Africa_East_Pastoralist PN (other) Kenya_PastoralN Keringet Cave (GrJg4)? Kenya I8758 NS2017.01.01 ‐0.46 36.1 M 64.1 0.16 L0a2d L0a2d https:/L0a2d https:/ROOT>NM>RSRS>L0>L0a'b'f'g'k>L0a'b'f'g>L0a'b'g>L0a'g>L0a>L0a2>L0a2d L0 L A1b(xA1b1b2a); A‐P A1b1b2b2~ 0.07 A1b1b2 A1b‐M13 A‐M13 A‐M13 https:/A‐M13 https:/A1b1b2b2~ A‐PR2921>L1090>V168>V221>L419>M32>M144>M13 A A MartinianobioRx 292750 0.29156 0.038 PASS (dam n/a PrendergastScience2019 Direct: 95.4%; IntCal20, OxC756‐489 calBCE (247 ‐641 ‐756 ‐489 Africa_East_Pastoralist PN (other) Kenya_PastoralN Naishi Rockshelter Kenya I8919 NV6.01 ‐0.66 36.4 M 77.2 0.05 L4a1 L4a1 https:/L4a1 https:/ROOT>NM>RSRS>L1'2'3'4'5'6>L2'3'4'5'6>L2'3'4'6>L3'4'6>L3'4>L4>L4a>L4a1 L4 L A1b1b2b; A‐M13 A1b1b2b2~ 0.07 A1b1b2 A1b‐M13 A‐M13 A‐M13 https:/A‐M13 https:/A1b1b2b2~ A‐PR2921>L1090>V168>V221>L419>M32>M144>M13 A A MartinianobioRx 809030 1.84046 0.088 PASS n/a PrendergastScience2019 Direct: 95.4%; IntCal20, OxC391‐208 calBCE (225 ‐300 ‐391 ‐208 Africa_East_Pastoralist PN (other) Kenya_PastoralN Naivasha Burial Site Kenya UCT386 UCT386 ‐32 18.5 M 0.02 L0d1b2b1b L0d1b2b1b https:/L0d1b2b1b https:/ROOT>NM>RSRS>L0>L0d>L0d1'2>L0d1>L0d1b>L0d1b2>L0d1b2b>L0d1b2b1>L0d1b2b1b L0 L A1b1b2a 0.06 A1b1b2 A1b‐M51 A‐M51 A‐M51 https:/A‐M51 https:/A1b1b2a A‐PR2921>L1090>V168>V221>L419>M32>M144>M51 A A MartinianobioRx 1028904 2.328 .. PASS n/a SkoglundCell2017 Direct: 95.4%; SHCal20, OxC88 calBCE ‐ 202 calC 40 ‐88 202 Africa_South_Ancient South_Africa_1900BP.SG Faraoskop Rock Shelter, South Africa South Africa KhoesanLeipzigHunter ‐32.8 18 M .. 0.03 L0d2c1 L0d2c1 https:/L0d2c1 https:/ROOT>NM>RSRS>L0>L0d>L0d1'2>L0d2>L0d2c>L0d2c1 L0 L A1b1b2a A1b1b2b M51 0.06 A1b1b2 A1b‐M51 A‐M51 A‐M51 https:/A‐M51 https:/A1b1b2a A‐PR2921>L1090>V168>V221>L419>M32>M144>M51 A A MartinianobioRx 731098 1.096 .. PASS n/a SkoglundCell2017 Direct: 95.4%; SHCal20, OxC403‐201 calBCE (233 ‐295 ‐403 ‐201 Africa_South_Ancient South_Africa_2200BP.SG St. Helena, South Africa South Africa I10872 LAK93 C13 212 (6) 5.86 10.1 .. 0.11 L0a2a1 L0a2a1 https:/L0a2a1 https:/ROOT>NM>RSRS>L0>L0a'b'f'g'k>L0a'b'f'g>L0a'b'g>L0a'g>L0a>L0a2>L0a2a>L0a2a1 L0 L .. BT B low coverage 0.08 B B B‐M181 B‐M181 https:/B https:/B B‐M181 B B Kolgeh 552159 0.7024 .. PASS Cameroon, Shum Laka FaLipsonNature2020 Direct: 95.4%; IntCal20, OxC5980‐5771 calBCE (6 ‐5870 ‐5980 ‐5771 Child (4 ±Africa_West_Early_HoloceCameroon Early Holocene Cameroon_SMA_published Shum Laka Burial Unit 2, DouCameroon I10873 , I10873_publishedLA 5.86 10.1 .. 0.37 L1c2a1b L1c2a1b https:/L1c2a1b https:/ROOT>NM>RSRS>L1'2'3'4'5'6>L1>L1c>L1c1'2'4'5'6>L1c1'2'4'6>L1c2'4>L1c2>L1c2a>L1c2a1>L1c2a1b L1 L YFull B2b1 B2b1(xB2b1a,xB2b1b) 0.13 B2b1* B2‐CTS162 B‐CTS162 B‐CTS162 https:/B‐CTS591 https:/B2b1~.. B‐M181>CTS1388>M182>M112>M8521>CTS162 BB FTDNA/YFull (SG 1121342 3.94464 .. PASS Cameroon, Shum Laka FaLipsonNature2020 Direct: 95.4%; IntCal20, OxC1217‐1055 calBCE (2 ‐1115 ‐1210 ‐1020 Child (8 ±Africa_West_Late_Holoce Cameroon Late Holocene Cameroon_SMA.SG Shum Laka Burial Unit 4, SingCameroon I2966 Hora1 ‐11.7 33.6 M .. 0.09 L0k2 (PMDS > 3) L0k2 https:/L0k2 https:/ROOT>NM>RSRS>L0>L0a'b'f'g'k>L0k>L0k2 L0 L H2a2a1 ReichLab_v44BT B2b1b B2b1b:M6502B2b1b:M6598,B2b1b:M6662,B2b1b:M 0.38 B2b1b B2‐M6557(xM6485) B‐M6557 B‐M6557 https:/B‐Y25096 https:/B2b1b B‐M181>CTS1388>M182>M112>M8521>M192>M6557 B B MartinianobioRx 610605 0.84 .. QUESTIONAn/a SkoglundCell2017 Direct (Warning UNPUBLISH7131‐6775 calBCE (8 ‐6945 ‐7131 ‐6775 Africa_East_Ancient Malawi Malawi_LSA_Hora_8500BP Hora, Malawi Malawi I4468 FGA3 ‐10.8 33.8 M .. 0.08 L0d1c L0d1c https:/L0d1c https:/ROOT>NM>RSRS>L0>L0d>L0d1'2>L0d1>L0d1a'c'd>L0d1c L0 L BT B2b1 M8632 0.26 B2b1b B2‐M6557(xM6485) B‐M6557 B‐M6557 https:/B‐Y25096 https:/B2b1b B‐M181>CTS1388>M182>M112>M8521>M192>M6557 B B MartinianobioRx 30257 0.026 .
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