Electron Transfer Reactions of Ferrocene John R
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Structure-Function Relationship of Metalloproteins
RESEARCH ACTIVITIES Structure-Function Relationship of Metalloproteins Department of Life and Coordination-Complex Molecular Science Division of Biomolecular Functions FUJII, Hiroshi Associate Professor KURAHASHI, Takuya Assistant Professor CONG, Zhiqi IMS Fellow OHTSUKI, Akimichi Post-Doctoral Fellow WANG, Chunlan Graduate Student TANIZAWA, Misako Secretary Metalloproteins are a class of biologically important A d4 high-spin manganese(III) ion forms a Robin-Day Class II macromolecules, which have various functions such as oxygen mixed-valence system, in which electron transfer is occurring transport, electron transfer, oxidation, and oxygenation. These between the localized phenoxyl radical and the phenolate. This diverse functions of metalloproteins have been thought to is in clear contrast to a d8 low-spin nickel(II) ion with the depend on the ligands from amino acid, coordination struc- same salen ligand, which induces a delocalized radical (Robin- tures, and protein structures in immediate vicinity of metal Day Class III) over the two phenolate rings, as previously ions. In this project, we are studying the relationship between reported by others. The present findings point to a fascinating the electronic structures of the metal active sites and reactivity possibility that electron transfer could be drastically modu- of metalloproteins. lated by exchanging the metal ion that bridges the two redox centers. 1. One-Electron Oxidation of One-electron Oxidation Electronically-Diverse Manganese(III) and N N N N Nickel(II) Salen Complexes: Transition from M M R O O R R O O R Localized to Delocalized Mixed-Valence tBu tBu 3+ 2+ tBu tBu Ligand Radicals1) M = Mn , Ni t R = Bu, OCH3, Ph Electron Transfer Ligand radicals from salen complexes are unique mixed- Figure 1. -
Iron-Catalysed Transformation of Molecular Dinitrogen Into Silylamine Under Ambient Conditions
ARTICLE Received 6 Sep 2012 | Accepted 6 Nov 2012 | Published 4 Dec 2012 DOI: 10.1038/ncomms2264 Iron-catalysed transformation of molecular dinitrogen into silylamine under ambient conditions Masahiro Yuki1, Hiromasa Tanaka2, Kouitsu Sasaki1, Yoshihiro Miyake1, Kazunari Yoshizawa2 & Yoshiaki Nishibayashi1 Although stoichiometric transformations using transition metal–N2 complexes have been well investigated towards the goal of nitrogen fixation under mild reaction conditions, only a few examples of the catalytic transformations of N2 using transition metal–N2 complexes as catalysts have been reported. In almost all the catalytic systems, the use of Mo is essential to realize the catalytic transformation of N2, where Mo–N2 complexes are considered to work as effective catalysts. Here we show the first successful example of the Fe-catalysed transfor- mation of N2 into N(SiMe3)3 under ambient conditions, in which iron complexes such as iron pentacarbonyl [Fe(CO)5] and ferrocenes have been found to work as effective catalysts. A plausible reaction pathway is proposed, where Fe(II)–N2 complex bearing two Me3Si groups as ancillary ligands has an important role as a key reactive intermediate, with the aid of density-functional-theory calculations. 1 Institute of Engineering Innovation, School of Engineering, University of Tokyo, Yayoi, Bunkyo-ku, Tokyo 113-8656, Japan. 2 Institute for Materials Chemistry and Engineering, International Research Center for Molecular Systems, Kyushu University, Nishi-ku, Fukuoka 819-0395, Japan. Correspondence and requests for materials should be addressed to K.Y. (email: [email protected]) or to Y.N. (email: [email protected]). -
Concepts and Tools for Mechanism and Selectivity Analysis in Synthetic Organic Electrochemistry
Concepts and tools for mechanism and selectivity analysis in synthetic organic electrochemistry Cyrille Costentina,1,2 and Jean-Michel Savéanta,1 aUniversité Paris Diderot, Sorbonne Paris Cité, Laboratoire d’Electrochimie Moléculaire, Unité Mixte de Recherche Université–CNRS 7591, 75205 Paris Cedex 13, France Contributed by Jean-Michel Savéant, April 2, 2019 (sent for review March 19, 2019; reviewed by Robert Francke and R. Daniel Little) As an accompaniment to the current renaissance of synthetic organic sufficient to record a current-potential response but small electrochemistry, the heterogeneous and space-dependent nature of enough to leave the substrates and cosubstrates (of the order of electrochemical reactions is analyzed in detail. The reactions that follow one part per million) almost untouched. Competition of the the initial electron transfer step and yield the products are intimately electrochemical/chemical events with diffusional transport under coupled with reactant transport. Depiction of the ensuing reactions precisely mastered conditions allows analysis of the kinetics profiles is the key to the mechanism and selectivity parameters. within extended time windows (from minutes to submicroseconds). Analysis is eased by the steady state resulting from coupling of However, for irreversible processes, these approaches are blind on diffusion with convection forced by solution stirring or circulation. reaction bifurcations occurring beyond the kinetically determining Homogeneous molecular catalysis of organic electrochemical reactions step, which are precisely those governing the selectivity of the re- of the redox or chemical type may be treated in the same manner. The same benchmarking procedures recently developed for the activation action. This is not the case of preparative-scale electrolysis accom- of small molecules in the context of modern energy challenges lead to panied by identification and quantitation of products. -
Organometrallic Chemistry
CHE 425: ORGANOMETALLIC CHEMISTRY SOURCE: OPEN ACCESS FROM INTERNET; Striver and Atkins Inorganic Chemistry Lecturer: Prof. O. G. Adeyemi ORGANOMETALLIC CHEMISTRY Definitions: Organometallic compounds are compounds that possess one or more metal-carbon bond. The bond must be “ionic or covalent, localized or delocalized between one or more carbon atoms of an organic group or molecule and a transition, lanthanide, actinide, or main group metal atom.” Organometallic chemistry is often described as a bridge between organic and inorganic chemistry. Organometallic compounds are very important in the chemical industry, as a number of them are used as industrial catalysts and as a route to synthesizing drugs that would not have been possible using purely organic synthetic routes. Coordinative unsaturation is a term used to describe a complex that has one or more open coordination sites where another ligand can be accommodated. Coordinative unsaturation is a very important concept in organotrasition metal chemistry. Hapticity of a ligand is the number of atoms that are directly bonded to the metal centre. Hapticity is denoted with a Greek letter η (eta) and the number of bonds a ligand has with a metal centre is indicated as a superscript, thus η1, η2, η3, ηn for hapticity 1, 2, 3, and n respectively. Bridging ligands are normally preceded by μ, with a subscript to indicate the number of metal centres it bridges, e.g. μ2–CO for a CO that bridges two metal centres. Ambidentate ligands are polydentate ligands that can coordinate to the metal centre through one or more atoms. – – – For example CN can coordinate via C or N; SCN via S or N; NO2 via N or N. -
Arxiv:1706.09241V1 [Cond-Mat.Mtrl-Sci] 28 Jun 2017 Based Electrolyte Supercapacitors Remain Somewhat Sim- Confinement Might Have a Drastic Influence on the Sol- Ilar
Confinement Effects on an Electron Transfer Reaction in Nanoporous Carbon Electrodes Zhujie Li1;2;3, Guillaume Jeanmairet2;3, Trinidad M´endez-Morales1;2;3, Mario Burbano1;3, Matthieu Haefele1, Mathieu Salanne1;2;3 1Maison de la Simulation, CEA, CNRS, Univ. Paris-Sud, UVSQ, Universit´eParis-Saclay, F-91191 Gif-sur-Yvette, France 2Sorbonne Universit´es,UPMC Univ Paris 06, CNRS, Laboratoire PHENIX, F-75005 Paris, France and 3R´eseau sur le Stockage Electrochimique´ de l'Energie´ (RS2E), FR CNRS 3459, France∗ Nanoconfinement generally leads to drastic effect on the physical and chemical properties of ionic liquids. Here we investigate how the electrochemical reactivity in such media may be impacted inside nanoporous carbon electrodes. To this end, we study a simple electron transfer reaction using molecular dynamics simulations. The electrodes are held at constant electric potential by allowing the atomic charges on the carbon atoms to fluctuate. We show that the Fe3+=Fe2+ couple dissolved in an ionic liquid exhibits a deviation with respect to Marcus theory. This behavior is rationalized by the stabilization of a solvation state of the Fe3+ cation in the disordered nanoporous electrode that is not observed in the bulk. The simulation results are fitted with a recently proposed two solvation state model, which allows us to estimate the effect of such a deviation on the kinetics of electron transfer inside nanoporous electrodes. Nanoconfinement effects strongly impact on many liq- a supercapacitor16. Among the various questions raised uid properties, such as transport, diffusion coefficients, by this study, the most important ones are: How is the phase transitions, and solvation structures1{4. -
18- Electron Rule. 18 Electron Rule Cont’D Recall That for MAIN GROUP Elements the Octet Rule Is Used to Predict the Formulae of Covalent Compounds
18- Electron Rule. 18 Electron Rule cont’d Recall that for MAIN GROUP elements the octet rule is used to predict the formulae of covalent compounds. Example 1. This rule assumes that the central atom in a compound will make bonds such Oxidation state of Co? [Co(NH ) ]+3 that the total number of electrons around the central atom is 8. THIS IS THE 3 6 Electron configuration of Co? MAXIMUM CAPACITY OF THE s and p orbitals. Electrons from Ligands? Electrons from Co? This rule is only valid for Total electrons? Period 2 nonmetallic elements. Example 2. Oxidation state of Fe? The 18-electron Rule is based on a similar concept. Electron configuration of Fe? [Fe(CO) ] The central TM can accommodate electrons in the s, p, and d orbitals. 5 Electrons from Ligands? Electrons from Fe? s (2) , p (6) , and d (10) = maximum of 18 Total electrons? This means that a TM can add electrons from Lewis Bases (or ligands) in What can the EAN rule tell us about [Fe(CO)5]? addition to its valence electrons to a total of 18. It can’t occur…… 20-electron complex. This is also known Effective Atomic Number (EAN) Rule Note that it only applies to metals with low oxidation states. 1 2 Sandwich Compounds Obeying EAN EAN Summary 1. Works well only for d-block metals. It does not apply to f-block Let’s draw some structures and see some new ligands. metals. 2. Works best for compounds with TMs of low ox. state. Each of these ligands is π-bonded above and below the metal center. -
Synthesis and Reactions of Ferrocene
R Carbon Synthesis and Reactions of Ferrocene R Carbon Carbon Contents Objectives 1 Introduction 1 Preparation of ferrocene 2 Acetylation of ferrocene 7 Preparation of [Fe(η-C5H5)(η-C6H6)]PF6 10 Reaction of [Fe(η-C5H5)(η-C6H6)] PF6 with nucleophiles 12 Manuscript prepared by Dr. Almas I. Zayya, Dr. A. Jonathan Singh and Prof. John L. Spencer. School of Chemical and Physical Sciences, Victoria University of Wellington, New Zealand. R Carbon Objectives Introduction The principal aims of these experiments are to The archetypal organometallic compound provide experience in the synthesis, isolation, ferrocene, [Fe(η-C5H5)2], is of historical importance purification and characterisation of organometallic since its discovery and structural characterisation compounds. Purification techniques include in the early 1950s sparked extensive research into distillation, sublimation, chromatography and the chemistry of metal sandwich compounds.1 crystallisation. The main characterisation Two of the chemists who first proposed the correct technique used in these experiments is 1H NMR structure of ferrocene (Figure 1), Geoffrey Wilkinson spectroscopy using the benchtop Spinsolve and Ernst Otto Fischer, were awarded the Nobel spectrometer. Furthermore, students will Prize in Chemistry in 1973 for their pioneering work also develop their synthetic skills using inert on the chemistry of sandwich complexes. atmosphere techniques. Ferrocene is an example of a π-complex in which interactions between the d-orbitals of the Fe2+ metal centre with the π-orbitals of the two planar - cyclopentadienyl ligands (C5H5 ) form the metal-ligand bonds. Thus, all the carbon atoms in the cyclopentadienyl rings are bonded equally to the central Fe2+ ion. Ferrocene exhibits aromatic properties and is thermally very stable. -
Oxidation of Ferrocene Derivatives with Dibenzoyl Peroxide and Meta-Chloroperoxybenzoic Acid
Cleveland State University EngagedScholarship@CSU ETD Archive 2018 Oxidation of Ferrocene Derivatives with Dibenzoyl Peroxide and Meta-Chloroperoxybenzoic Acid Jos M. Halstead Cleveland State University Follow this and additional works at: https://engagedscholarship.csuohio.edu/etdarchive Part of the Chemistry Commons, and the Medicine and Health Sciences Commons How does access to this work benefit ou?y Let us know! Recommended Citation Halstead, Jos M., "Oxidation of Ferrocene Derivatives with Dibenzoyl Peroxide and Meta- Chloroperoxybenzoic Acid" (2018). ETD Archive. 1108. https://engagedscholarship.csuohio.edu/etdarchive/1108 This Dissertation is brought to you for free and open access by EngagedScholarship@CSU. It has been accepted for inclusion in ETD Archive by an authorized administrator of EngagedScholarship@CSU. For more information, please contact [email protected]. OXIDATION OF FERROCENE DERIVATIVES WITH DIBENZOYL PEROXIDE AND META-CHLOROPEROXYBENZOIC ACID JOSHUA M. HALSTEAD Bachelor of Science in Chemistry Cleveland State University May 2011 Master of Science in Chemistry Cleveland State University May 2013 submitted in partial fulfillment of requirements for the degree DOCTOR OF PHILOSOPHY IN CLINICAL AND BIOANALYTICAL CHEMISTRY at the CLEVELAND STATE UNIVERSITY DECEMBER 2018 DEDICATION This work is dedicated to Dr. John Masnovi, who sadly passed away shortly before its completion. I will remember him for his insightful instruction, kind demeanor, and willingness to help anyone learn. He will be missed. We hereby approve this dissertation for Joshua M. Halstead Candidate for the Doctor of Philosophy in Clinical-Bioanalytical Chemistry degree for The Department of Chemistry and the CLEVELAND STATE UNIVERSITY’S College of Graduate Studies by _________________________________________________________________ Dissertation Chairperson, Dr. -
Experiment #4 the Preparation of Ferrocene & Acetylferrocenes1
Experiment #4: The Preparation of Ferrocene & Acetylferrocene MASSACHUSETTS INSTITUTE OF TECHNOLOGY Department of Chemistry 5.311 Introductory Chemical Experimentation EXPERIMENT #4 THE PREPARATION OF FERROCENE & ACETYLFERROCENES1 I. Purpose The principal aims of this experiment are to provide background information about and experience in: S the synthesis and electronic structure of ferrocene (1), ( -C5H5)2Fe [bis(pentahaptocyclopentadienyl) iron]2 S the synthesis of an ionic liquid, as environment for the acetylation of ferrocene S the use of inert atmospheres (including glove box techniques) S recrystallization or sublimation S the use of GC/MS and thin-layer chromatography as analytical tools and column chromatography as a purification technique • the concepts of Green Chemistry such as Atom Economy3 and alternative non-polluting solvents Ferrocene is a historically important molecule. The initial recognition of the structure of 4 C10H10Fe in 1951 spawned a vast area of chemistry, viz., transition metal organometallic chemistry. This field is still developing and has produced a huge number of compounds in which saturated, unsaturated, and aromatic organic fragments are bonded directly to metals. All carbon atoms in the two cyclopentadienyl rings are equally bonded to the central ion by electrons in the rings. The sandwich structure proposed by Wilkinson and Fischer5,6 (Nobel prize in 1973) in early 1 Mircea D. Gheorghiu designed the experiment to include the acetylation of ferrocene in ionic liquid. 2 The word hapto means in Greek to fasten. Pentahapto therefore, is to be taken as “fastened in five places.” The greek letter followed by a superscript indicates how many atoms of the ligand are attached to the metal. -
Ferrocene Functionalized Single-Walled Carbon Nanotube Bundles
1200 J. Phys. Chem. C 2007, 111, 1200-1206 Ferrocene Functionalized Single-Walled Carbon Nanotube Bundles. Hybrid Interdigitated Construction Film for L-Glutamate Detection Xing-Jiu Huang,*,† Hyung-Soon Im,† Do-Hoon Lee,‡ Hak-Sung Kim,‡ and Yang-Kyu Choi*,† Nano-Bio-Electronic Lab, Department of Electrical Engineering and Computer Science and Department of Biological Sciences, Korea AdVanced Institute of Science and Technology, 373-1 Guseong-dong, Yuseong-gu, Daejeon, South Korea ReceiVed: September 4, 2006; In Final Form: NoVember 9, 2006 A ferrocene functionalized SWCNT noncovalent nanohybrid was investigated by using a ferrocene/SWCNT interdigitated construction film as an electrode for L-glutamate detection. Ferrocene could immobilize on the surface of SWCNT bundles, and the ferrocene/SWCNT hybrid had a high stability not only in water but also in an organic solvent such as ethanol and acetone (no sediment was observed for more than 3 months). The nanohybrid could not only be thoroughly dispersed in ethanol but also adhere tightly onto glass substrates to form an interdigitated construction film. Owing to the existence of more carbon nanotubes, more active electrochemical mediators, and the unique interdigitated structure of the film, the ferrocene/SWCNT electrode exhibited a high catalytic efficiency, high sensitivity, and fast response during the detection of a low concentration of L-glutamate (1 µM). A good linear relationship between current and concentration was obtained from1to7µM. 1. Introduction of AST and ALT in monitoring patients with liver diseases. AST and ALT are also biological catalysts, and the assay of all Carbon nanotubes are an attractive material for applications AST and ALT activity is based on the following enzyme 1,2 in electronic or sensor devices. -
Oxidation-Reduction Reactions
Oxidation-Reduction Reactions What is an Oxidation-Reduction, or Redox, reaction? Oxidation-reduction reactions, or redox reactions, are technically defined as any chemical reaction in which the oxidation number of the participating atom, ion, or molecule of a chemical compound changes. Some common redox reactions include fire, rusting of metals, browning of fruit, and photosynthesis. In simpler terms, redox reactions involve the transfer of electrons from one substance to another. In a redox reaction, electrons can never be “lost”; if one substance loses electrons, another substance must gain an equal number of electrons. Therefore, oxidation and reduction always happen at the same time; they are a matched set. What is Oxidation? Oxidation is the loss of electrons by an atom, ion, or molecule. The atom, ion, or molecule that is oxidized will become more positively charged. Oxidation may also involve the addition of oxygen or the loss of hydrogen. What is Reduction? Reduction is the gain of electrons by an atom, ion, or molecule. The atom, ion, or molecule that is reduced will become more negatively charged. Reduction may also involve the loss of oxygen or the gain of hydrogen. Tips for determining if an atom, ion, or compound has been Oxidized or Reduced: • Remembering one of the two following mnemonics can be of assistance in determining the difference between oxidation and reduction: 1) OIL RIG- Oxidation Is Loss (of electrons), Reduction Is Gain (of electrons) or 2) LEO GER- Loss of Electrons- Oxidation, Gain of Electrons- Reduction • Atoms of metals tend to lose electrons to form positive ions (oxidation) • Atoms of non-metals tend to gain electrons to form negative ions (reduction). -
Renewable Fuels
research highlights nucleobase and the phosphate linker — to have proposed a chemical method that produce nucleic acid analogues with very could be used to upgrade more common and different properties. Metal-containing higher-yielding fermentation products into a variants have also been made, in which the mixture containing the desired hydrocarbons. two strands of the double helix are held together by metal–ligand coordination rather O O than hydrogen bonding. Now, James Tucker and co-workers 1.7 % 49.8 % at the University of Birmingham, UK, Eye of the beholder have taken the first steps towards making O O From pesky biochemists winning the a DNA mimic in which metals form an Nobel Prize in Chemistry, to the social integral part of the polymer backbone. < 0.5 %8.3 % construction of scientific ideas. Is it all On recognizing that the distance between just a matter of perspective? the two cyclopentadienyl (Cp) rings in O O ferrocene is very similar to the distance Considering the time of year, it would between adjacent sets of stacked base pairs be rude not to mention this year’s Nobel in B-DNA, the team set about designing and 4.2 % 2.8 % Laureates in Chemistry, Robert J. Lefkowitz making a nucleic acid analogue based on and Brian K. Kobilka. Being awarded the this well-known organometallic compound. Clostridium acetobutylicum is a bacterium prize “for studies of G-protein-coupled The resulting ferrocene nucleic acid that has been known for almost 100 years, receptors” resulted in a tedious furore (FcNA) structure is made up of a repeating and it produces, by fermentation, a mixture of owing to the awarding of the prize to C3-linker–ferrocene–C3-linker–phosphate acetone, butanol and ethanol (widely known biochemists.