A Phylogeny of the High-Elevation Tibetan Megophryid Frogs and Evidence for the Multiple Origins of Reversed Sexual Size Dimorphism J

Total Page:16

File Type:pdf, Size:1020Kb

A Phylogeny of the High-Elevation Tibetan Megophryid Frogs and Evidence for the Multiple Origins of Reversed Sexual Size Dimorphism J Journal of Zoology. Print ISSN 0952-8369 A phylogeny of the high-elevation Tibetan megophryid frogs and evidence for the multiple origins of reversed sexual size dimorphism J. Fu, C. J. Weadickà &K.Bi Department of Integrative Biology, University of Guelph, Guelph, ON, Canada Keywords Abstract phylogeny; sexual dimorphism; DNA sequences; megophryids; Scutiger; A molecular phylogeny of the high-elevation Tibetan megophryid frogs was Oreolalax; Vibrissaphora. reconstructed using mitochondrial and nuclear gene sequences. Both parsimony and Bayesian analysis produced similar tree topologies, which identified the genus Correspondence Leptobrachium as a sister group to Vibrissaphora, and the genera Oreolalax and Jinzhong Fu, Department of Integrative Scutiger as monophyletic groups. Within the latter two genera, several species Biology, University of Guelph, Guelph, ON groups were also clearly recognized. At least 13 megophryids display reversed N1G 2W1, Canada. Tel: 519 824 4120 ext. sexual size dimorphism (RSSD), where males are equal to or larger than females. 52715; Fax: 519 767 1656 According to our phylogenetic hypothesis, RSSD may have independently evolved Email: [email protected] at least five times or as many as seven times in this group. The multiple origins of RSSD within this group provide an excellent opportunity for studying the ÃCurrent address: Department of Ecology & relationship between body size sexual dimorphism and other life-history traits Evolutionary Biology, University of Toronto, and for determining the costs and benefits of RSSD. 25 Harbord St, Toronto, ON M5S 3G5, Canada. Received 8 December 2006; accepted 8 May 2007 doi:10.1111/j.1469-7998.2007.00330.x Introduction between the sexes in breeding populations could explain most of the dimorphism. As such, the evolutionary factors Females are larger than males in most animal species, with operating on body size in anurans remain largely controver- avian and mammalian species being the main exceptions. sial, and a study of the origin of RSSD will undoubtedly The widely accepted explanation for large female size is improve our understanding of how natural and sexual fecundity advantage, as egg production increases with body selection operate in this large and important group. RSSD size (Andersson, 1994). Most anurans follow this rule, but in is particularly concentrated among the high-elevation Tibetan c. 10% of species, males tend to be of an equal or of a larger megophryid frog species of the genera Oreolalax, Scutiger and size than females (Shine, 1979). For instance, male Vibrissa- Vibrissaphora; in at least 13 of them, males are of an equal or phora boringiae may attain a body length of 69.8–89.0 mm, a larger size than females (Liu & Hu, 1961; Yang, 1991; Ye, whereas females fall within the range of 58.6–76.0 mm (Liu Fei & Hu, 1993; Fei & Ye, 2000, Supplementary Material & Hu, 1961). This is known as reversed sexual size dimorph- Appendix S1). The repeated presence of RSSD in this group ism (RSSD). Several mechanisms have been proposed to offers us an excellent opportunity to examine the adaptive explain the large male size in anurans: male-to-male physical values and tradeoffs that have shaped the degree of sexual size combat (Shine, 1979), different selection gradients for size dimorphism over time, from both the male’s and female’s between males and females (Arak, 1988), female choice perspective. (Morris & Yoon, 1989) and several others (see Andersson, Hypotheses on the evolutionary origin(s) of RSSD can 1994 for a review). Monnet & Cherry (2002) pointed out only be tested within a solid phylogenetic framework. For that the previous studies suffered from either methodologi- instance, a shared single origin of RSSD would suggest that cal problems (e.g. non-independent data points) or unrealis- the multiple occurrences of RSSD simply reflect phyloge- tic assumptions, and rejected the sexual selection-based netic inertia, and are unrelated to variation in present-day explanations. Instead, they suggested that the age difference selection pressures. Conversely, independent origins of Journal of Zoology 273 (2007) 315–325 c 2007 The Authors. Journal compilation c 2007 The Zoological Society of London 315 A phylogeny of Tibetan megophryid frogs J. Fu, C. J. Weadick and K. Bi RSSD might reflect convergence due to similar selection RSSD. Three species from two other genera, Leptolalax and pressures, a possibility that could be investigated by con- Megophrys, were selected as outgroups for phylogenetic sidering how RSSD and environmental conditions are dis- analysis. The genus Leptolalax has been considered to be tributed across the phylogeny. Phylogenetic hypotheses closely related to the ingroup genera by many taxonomists provide the foundation necessary for making informed (e.g. Dubois, 1980; Fei et al., 2005), while the genus evolutionary comparisons that account for shared history Megophrys is relatively distantly related to the ingroup. All in addition to contemporary selective pressures (Harvey & voucher specimens are deposited in the herpetological collec- Pagel, 1991). tions of the Chengdu Institute of Biology (Chengdu), the Several phylogenetic works on the high-elevation Tibetan Institute of Zoology (Beijing) and the Royal Ontario Mu- megophryids have been published. For example, Fu, seum at Toronto (Table 1). Lathrop & Murphy (1997) and Fu & Murphy (1997) analysed some morphological data of the genera Scutiger Laboratory protocols and Oreolalax, respectively. A few recent studies have focused on inter-generic relationships within the Mego- DNA sequence data were used for phylogenetic reconstruc- phryidae; Delorme & Dubois (2001) presented a preliminary tion. Two fragments were targeted for sequencing. One is phylogeny of 15 megophryid frogs based on 54 external from the mitochondrial genome, and includes the second morphological characters, and Zheng (2004) studied the half of the 12S gene, most of the 16S gene, plus the tRNAÀval relationships among eight genera of the family Megophryi- gene between them. This fragment is one of the most dae using partial 16S and cytochrome b gene sequence data. conservative parts of the mitochondrial genome and has Frost et al. (2006) also included eight megophryids in their been used extensively in the reconstruction of species-level amphibian tree of life. Unfortunately, these previous studies phylogenies in various vertebrate groups, especially in am- had either limited number of taxa or limited number of phibians (e.g. Vences et al., 2004). The other fragment is part informative characters, as well as some analytical short- of the recombination activating gene 1 (RAG-1), a single- comings, as Frost et al. (2006) pointed out. As such, the copy protein-coding nuclear gene that has also been widely phylogenetic relationships of megophryid frogs in general used in amphibian phylogenetics (e.g. Mauro et al., 2004). and among species with RSSD in particular remain largely DNA was extracted from muscle tissues preserved in 95% unknown. The lack of a solid phylogeny for this group has ethanol or liquid nitrogen using the Promega Wizard geno- constrained the pursuit of several research avenues. mic DNA extraction protocols. A standard polymerase We recently initiated a project aiming at understanding chain reaction (PCR) was used to amplify the mitochondrial the evolution of sexual dimorphism and sexual selection in 12S–16S gene fragment. PCR products were purified using these high-elevation megophryid frogs. As the first step of Qiaquick protocols (Qiagen, Germantown, MA, USA), and this long-term study, we used a combination of nuclear and were directly sequenced with BigDye-labelled terminator mitochondrial DNA (mtDNA) sequence data to reconstruct sequencing kits on an ABI 377 automatic sequencer (Applied a molecular phylogeny of the genera Oreolalax, Scutiger and Biosystems, Foster City, CA, USA). The primers, 12SA-50, Vibrissaphora. Furthermore, by mapping size dimorphism 16Sbr-30 (Palumbi, 1996), 1602L (50-GTA TAC CGG AAG on to the reconstructed tree, we tested the single versus GTG TAC TTG GAA CAG-30, this study) and 2571H (50- multiple origins hypotheses of RSSD among these mego- TAC CTT CGC ACG GTC AGA ATA CCG C-30,this phryids. study), were used to amplify and sequence the 12S–16S fragment. Most sequencing was conducted in both directions Material and methods with a 70–80% overlap. In a few cases, strings of eight or more consecutive guanines or cytosines disrupted sequencing and, as a result, sequences from only one direction were Species sampling obtained. For the RAG-1 gene, five of the samples were A total of 34 specimens representing 23 species of the genera amplified, purified and directly sequenced using the same Oreolalax, Scutiger and Vibrissaphora were collected during protocols as the mitochondrial genes. The primers, Amp- 1999–2006. Zheng (2004) suggested that the three genera RAG1 F (50-AGC TGC AGY CAR TAC CAY AAR ATG might form a monophyletic group. All eight species with TA-30, Mauro et al., 2004) and RAG1-R (50-GCA AAG reported RSSD in the genera Oreolalax and Scutiger TTT CCG TTC ATT CTC AT-30, this study), were used for (O. jingdongensis, O. nanjiangensis, O. omeimontis, O. popei, both amplification and sequencing. For the rest of the O. rhodostigmatus, S. glandulatus, S. mammatus and samples, the targeted fragments were first amplified and then S. muliensis) were included in our analysis. Five of the six cloned into the pCR2.1/TOPO vector (Invitrogen, Carlsbad, species of the genus Vibrissaphora (V. ailaonica, V. boringiae, CA, USA). The standard M13 forward and reverse primers V. leishanensis, V. liui and V. ngoclinhensis) have larger were then used to sequence the inserted fragment. males, but we were only able to obtain two species in this analysis. One species from the genus Leptobrachium, which Analysis was often considered to be closely related to Vibrissaphora (but see Zheng, 2004), was also included in the analysis. Sequence alignment was conducted with the computer None of the Leptobrachium species are known to display programs ClustalX (version 1.8; Thompson et al., 1997) 316 Journal of Zoology 273 (2007) 315–325 c 2007 The Authors.
Recommended publications
  • Present and Past Climatic Effects on the Current Distribution and Genetic
    Journal of Biogeography (J. Biogeogr.) (2016) ORIGINAL Present and past climatic effects on the ARTICLE current distribution and genetic diversity of the Iberian spadefoot toad (Pelobates cultripes): an integrative approach Jorge Gutierrez-Rodrıguez1,A.Marcia Barbosa2 and Inigo~ Martınez-Solano3,4,* 1Museo Nacional de Ciencias Naturales, ABSTRACT CSIC, 28006 Madrid, Spain, 2Centro de Aim Predicting species responses to global change is one of the most pressing Investigacß~ao em Biodiversidade e Recursos issues in conservation biogeography. A key part of the problem is understand- Geneticos (CIBIO/InBIO) – Universidade de Evora, 7004-516 Evora, Portugal, 3CIBIO/ ing how organisms have reacted to climatic changes in the past. Here, we use InBIO, Centro de Investigacß~ao em species distribution modelling to infer the effects of climate changes since the bp Biodiversidade e Recursos Geneticos, Last Interglacial (LIG, c. 130,000 yr ) on patterns of genetic structure and Universidade do Porto, 4485-661 Vair~ao, diversity in the western spadefoot toad (Pelobates cultripes) in combination Portugal, 4Instituto de Investigacio´nen with spatially explicit phylogeographical analyses. Recursos Cinegeticos (CSIC-UCLM-JCCM), Location Iberian Peninsula and mainland France. Ronda de Toledo, s/n, 13071 Ciudad Real, Spain Methods Five hundred and twenty-four individuals from 54 populations across the species range were sampled to document patterns of genetic diversity and infer their evolutionary history based on data from mtDNA and 14 poly- morphic microsatellites. Generalized linear models based on distribution data were used to infer climatic favourability for the species in the present and in palaeoclimatic simulations for the LIG, the mid-Holocene and the Last Glacial Maximum (LGM).
    [Show full text]
  • AMNH-Scientific-Publications-2014
    AMERICAN MUSEUM OF NATURAL HISTORY Fiscal Year 2014 Scientific Publications Division of Anthropology 2 Division of Invertebrate Zoology 11 Division of Paleontology 28 Division of Physical Sciences 39 Department of Earth and Planetary Sciences and Department of Astrophysics Division of Vertebrate Zoology Department of Herpetology 58 Department of Ichthyology 62 Department of Mammalogy 65 Department of Ornithology 78 Center for Biodiversity and Conservation 91 Sackler Institute for Comparative Genomics 99 DIVISION OF ANTHROPOLOGY Berwick, R.C., M.D. Hauser, and I. Tattersall. 2013. Neanderthal language? Just-so stories take center stage. Frontiers in Psychology 4, article 671. Blair, E.H., and Thomas, D.H. 2014. The Guale uprising of 1597: an archaeological perspective from Mission Santa Catalina de Guale (Georgia). In L.M. Panich and T.D. Schneider (editors), Indigenous Landscapes and Spanish Missions: New Perspectives from Archaeology and Ethnohistory: 25–40. Tucson: University of Arizona Press. Charpentier, V., A.J. de Voogt, R. Crassard, J.-F. Berger, F. Borgi, and A. Al- Ma’shani. 2014. Games on the seashore of Salalah: the discovery of mancala games in Dhofar, Sultanate of Oman. Arabian Archaeology and Epigraphy 25: 115– 120. Chowns, T.M., A.H. Ivester, R.L. Kath, B.K. Meyer, D.H. Thomas, and P.R. Hanson. 2014. A New Hypothesis for the Formation of the Georgia Sea Islands through the Breaching of the Silver Bluff Barrier and Dissection of the Ancestral Altamaha-Ogeechee Drainage. Abstract, 63rd Annual Meeting, Geological Society of America, Southeastern Section, April 10–11, 2014. 2 DeSalle, R., and I. Tattersall. 2014. Mr. Murray, you lose the bet.
    [Show full text]
  • Hand and Foot Musculature of Anura: Structure, Homology, Terminology, and Synapomorphies for Major Clades
    HAND AND FOOT MUSCULATURE OF ANURA: STRUCTURE, HOMOLOGY, TERMINOLOGY, AND SYNAPOMORPHIES FOR MAJOR CLADES BORIS L. BLOTTO, MARTÍN O. PEREYRA, TARAN GRANT, AND JULIÁN FAIVOVICH BULLETIN OF THE AMERICAN MUSEUM OF NATURAL HISTORY HAND AND FOOT MUSCULATURE OF ANURA: STRUCTURE, HOMOLOGY, TERMINOLOGY, AND SYNAPOMORPHIES FOR MAJOR CLADES BORIS L. BLOTTO Departamento de Zoologia, Instituto de Biociências, Universidade de São Paulo, São Paulo, Brazil; División Herpetología, Museo Argentino de Ciencias Naturales “Bernardino Rivadavia”–CONICET, Buenos Aires, Argentina MARTÍN O. PEREYRA División Herpetología, Museo Argentino de Ciencias Naturales “Bernardino Rivadavia”–CONICET, Buenos Aires, Argentina; Laboratorio de Genética Evolutiva “Claudio J. Bidau,” Instituto de Biología Subtropical–CONICET, Facultad de Ciencias Exactas Químicas y Naturales, Universidad Nacional de Misiones, Posadas, Misiones, Argentina TARAN GRANT Departamento de Zoologia, Instituto de Biociências, Universidade de São Paulo, São Paulo, Brazil; Coleção de Anfíbios, Museu de Zoologia, Universidade de São Paulo, São Paulo, Brazil; Research Associate, Herpetology, Division of Vertebrate Zoology, American Museum of Natural History JULIÁN FAIVOVICH División Herpetología, Museo Argentino de Ciencias Naturales “Bernardino Rivadavia”–CONICET, Buenos Aires, Argentina; Departamento de Biodiversidad y Biología Experimental, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina; Research Associate, Herpetology, Division of Vertebrate Zoology, American
    [Show full text]
  • Halliday Conservation Library January
    2020 Journal Publications January Addis, B. R. Lowe, W. H. (2020). Long-term survival probability, not current habitat quality, predicts dispersal distance in a stream salamander. Ecology, Accepted Article, e02982. https://esajournals.onlinelibrary.wiley.com/doi/abs/10.1002/ecy.2982 Agostinia, M. G. Roesler, I. Bonetto, C. Ronco, A. E. Bilenca, D. (2020). Pesticides in the real world: The consequences of GMO-based intensive agriculture on native amphibians. Biological Conservation, 241, Article 108355. https://www.sciencedirect.com/science/article/pii/S0006320719309905?fbclid=IwAR3tnrdCEHa1T9 McZT3GG1A4ae46vDA7aQnwBF354hJ2fjmlBjyK7aZRx4Q AliBardi, L. (2020). Presence of immune cells in the regenerating caudal spinal cord of frog tadpoles indicates active immune-surveillance before metamorphosis. Zoology, In Press, Journal Pre-proof, 125745. https://www.sciencedirect.com/science/article/abs/pii/S0944200620300040 Amori, G. Bologna, M. A. Luiselli, L. (2020). A review of mono- and bispecific genera of Amphibians worldwide. The Herpetological Journal, 30(1), pp. 47-51. https://www.thebhs.org/publications/the-herpetological-journal/volume-30-number-1-january- 2020/2027-07-a-review-of-mono-and-bispecific-genera-of-amphibians-worldwide Anjos, A. G. Costa, R. N. Brito, D. Solé, M. (2020). Is there an association between the ecological characteristics of anurans from the Brazilian Atlantic Forest and their extinction risk? Ethology, Ecology & Evolution, DOI: 10.1080/03949370.2020.1711815. https://www.tandfonline.com/doi/abs/10.1080/03949370.2020.1711815 Araújo, A. P. da C. Malafaia, G. (2020). Can short exposure to polyethylene microplastics change tadpoles’ behaviour? A study conducted with neotropical tadpole species belonging to order anura (Physalaemus cuvieri). Journal of Hazardous Materials, Article 122214, In Press, Journal Pre- proof.
    [Show full text]
  • Distinct Genetic Basis of Closely Related Toad Tadpoles Respectively Adapted to High Altitude and Karst Caves
    G C A T T A C G G C A T genes Article Plateau Grass and Greenhouse Flower? Distinct Genetic Basis of Closely Related Toad Tadpoles Respectively Adapted to High Altitude and Karst Caves 1,2, 1, 1,2 1,2 1, Liming Chang y, Wei Zhu y, Shengchao Shi , Meihua Zhang , Jianping Jiang *, Cheng Li 1, Feng Xie 1 and Bin Wang 1,* 1 CAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization & Ecological Restoration and Biodiversity Conservation Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; [email protected] (L.C.); [email protected] (W.Z.); [email protected] (S.S.); [email protected] (M.Z.); [email protected] (C.L.); [email protected] (F.X.) 2 University of Chinese Academy of Sciences, Beijing 100049, China * Correspondence: [email protected] (B.W.); [email protected] (J.J.) These authors have contributed equally to this work. y Received: 1 December 2019; Accepted: 19 January 2020; Published: 22 January 2020 Abstract: Genetic adaptation to extremes is a fascinating topic. Nevertheless, few studies have explored the genetic adaptation of closely related species respectively inhabiting distinct extremes. With deep transcriptome sequencing, we attempt to detect the genetic architectures of tadpoles of five closely related toad species adapted to the Tibetan Plateau, middle-altitude mountains and karst caves. Molecular evolution analyses indicated that not only the number of fast evolving genes (FEGs), but also the functioning coverage of FEGs, increased with elevation. Enrichment analyses correspondingly revealed that the highland species had most of the FEGs involved in high-elevation adaptation, for example, amino acid substitutions of XRCC6 in its binding domains might improve the capacity of DNA repair of the toad.
    [Show full text]
  • Climatic Niche Measures and Extinction Risks of Amphibians In
    Australian Systematic Botany, 2017, 30, 414–421 ©CSIRO 2017 doi:10.1071/SB17001_AC Supplemental material Correlates of ecological-niche diversity and extinction risk of amphibians in China under climate change Youhua ChenA,C,D and Tania EscalanteB AChengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610000, P.R. China. BGrupo de Biogeografía de la Conservación, Departamento de Biología Evolutiva, Facultad de Ciencias, Universidad Nacional Autónoma de México, Circuito Exterior s/n, Ciudad Universitaria, Coyoacán, CP 04510, México. CDepartment of Renewable Resources, University of Alberta, Edmonton, AB, T6G 2H1, Canada. DCorresponding author. Email: [email protected] Page 1 of 12 Australian Systematic Botany ©CSIRO 2017 doi:10.1071/SB17001_AC Table S1. Correlations of different niche diversity metrics and the significance of the correlations Upper triangular matrix collects the correlation values, whereas the lower triangular matrix collects the P-values of the correlations. NC, niche connectivity; TNC, trend of NC; NB, niche breadth; TNB, trend of NB; NP, niche position; TNP, trend of NP; NA, niche amount; TNA, trend of NA; NCO, niche spatial correlation; TNCO, trend of NCO; NPA, niche packing; TNPA, trend of NPA; NFD, niche fractal dimension; TNFD, trend of NFD; NV, niche volume; and TNV, trend of NV NB NP NC NA NCO NPA NFD TNB TNP TNC TNA TNCO TNPA TNFD NB 1.000 0.515 0.263 0.088 0.335 –0.168 –0.071 –0.269 –0.056 –0.081 0.027 –0.086 0.095 –0.017 NP 0.000 1.000 0.003 –0.318 0.342 0.633 –0.423 –0.125 –0.134 –0.089 0.088 –0.151
    [Show full text]
  • Ecography E4802 Fu, C., Hua, X., Li, J., Chang, Z., Pu, Z
    Ecography E4802 Fu, C., Hua, X., Li, J., Chang, Z., Pu, Z. and Chen, J. 2006. Elevational patterns of frog species richness and endemic richness in the Hengduan Mountains, China: geometric constraints, area and climate effects. – Ecography 29: 919–927. Appendix 1. Literature sources (in Chinese) for secondary data on Li, C. et al. 2003. Survey on herpetological resources in Labahe Nature frog distributions in the Hengduan Mountains, China. Reserve, Tianquan, Sichuan. – Sichuan Journal of Zoology 22: 31– 34. Chen, X. and Huang, Y. 1995. A herpetological survey of Muli county, Li, J. and Li, P. 2005. An introduction to National Cibaogou Nature Re- Sichuan. – Acta Herpetologica Sinica, Guiyang, 4 & 5: 117–123. serve of Xizang and its Herpetofauna. – Sichuan Journal of Zoology Fei, L. and Ye, C. 2000. The colour handbook of the amphibians of Si- 24: 260–262. chuan. – China Forestry Publishing House. Beijing, China. Li, S. et al. 1984. Amphibian fauna of southern Yunnan. – Acta Herpeto- He, X. and Liu, G. 2000. Observations on amphibians and reptiles of logica Sinica, Chengdu, new ser., 3: 47–54. Yanzidong area, Jianshui County, Yunnan Province. – Sichuan Jour- Liu, C. et al. 1960. Amphibia of Yunnan collected in 1958. – Acta Zoo- nal of Zoology 19: 127–130. logica Sinica 12: 149–174. He, X. and Wang, Z. 1999. An investigation on amphibians nearby the Ma, D. et al. 1983. A primary investigation on amphibians and reptiles of river reservoir of Manwan hyoroelectric station on Lancang Jiang, Xujiaba region on western slope of Ailao Mts. – In: Wu, Z (ed.), Re- Yunnan. – Sichuan Journal of Zoology 18: 119–123.
    [Show full text]
  • Amphibia, Anura, Megophryidae)
    Available online at www.sciencedirect.com Progress in Natural Science 19 (2009) 1403–1408 www.elsevier.com/locate/pnsc Short communication Morphological evolution from aquatic to terrestrial in the genus Oreolalax (Amphibia, Anura, Megophryidae) Gang Wei a,b,c, Bin Wang c, Ning Xu b, Zizhong Li a, Jianping Jiang c,* a Institute of Entomology, Guizhou University, Guiyang 550025, China b Centre of Ecology, Guiyang College, Guiyang 550005, China c Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China Received 18 January 2009; received in revised form 23 February 2009; accepted 23 February 2009 Abstract A phylogeny of 17 species in the genus Oreolalax is reconstructed based on 21 morphological characters from adult specimens, skel- eton specimens, tadpoles and eggs. Four species groups are recognized, of which the O. rugosus species group is the most primitive, the O. weigoldi species group is the second, the O. omeimontis species group is the third and the O. pingii species group is the most recently diversified. Based on the evolutional tendency of the morphological characters on the phylogenetic tree, it is proposed that the evolution of tympanum, tympanic annulus, columella, spoon-like cartilage and the web between toes reflect the habit changes from aquatic to ter- restrial. Thus, Oreolalax is regarded as one important representative genus to study further the evolution of morphological characters from aquatic to terrestrial. Ó 2009 National Natural Science Foundation of China and Chinese Academy of Sciences. Published by Elsevier Limited and Science in China Press. All rights reserved. Keywords: Aquatic; Terrestrial; Morphology; Evolution; Oreolalax 1. Introduction evolution, geographic distribution and differentiation of high-altitude pelobatid toads (=Megophryidae) in Asia [5].
    [Show full text]
  • Karyological Studies on Six Anuran Species from Yunnan Province, China
    Japanese Journal of Herpetology 15(1): 22-28., June 1993 (C) 1993 by The Herpetological Society of Japan Karyological Studies on Six Anuran Species from Yunnan Province, China WANZHAO LIU, DATONG YANG, AND MITSURU KURAMOTO Abstract: Karyotypes of six species of frogs from Yunnan Province, China, were described for the first time. Leptobrachium chapaensis had 2n=24 chromosomes com- posed of six large and six small pairs. Rana andersonii and R. maculosa had 2n=26 chromosomes comprising five large and eight small pairs. The karyotype of R, un- culuana was unique among the advanced anurans in having 2n=40 chromosomes form- ing a graded series. Polypedates dugritei had 2n=26 chromosomes consisting of five large and eight small pairs, and Rhacophorus rhodopus had 2n=26 chromosomes with five large, one medium, and seven small pairs. The six species examined here belong to the Pelobatidae, Ranidae, and Rhacophoridae, and the karyotypes of these species ex- cepting R. unculuana agree, in general, with the common karyotypes of the three families. Taxonomic status of each species is discussed on the basis of karyological features. Key words: Karyotype; Anura; Yunnan; China The amphibian fauna of Yunnan Province is field after Omura's (1967) method or in the quite rich, comprising a total of 94 anuran, six laboratory by conventional air-dry method. urodelan, and one gymnophionan species (Yang, For the hypotonic treatment, dilute KCl solution 1991). Of the first, karyotypes have been (0.4%) was applied for 30 to 40 minutes. reported only for 26 species (Li et al., 1981, Diploid chromosome numbers were determined 1990, 1991a, b; Tan and Wu, 1987; Wu and by observing more than 100 metaphase plates Zhao, 1985; Wu et al., 1989; Zhao, 1988; Zhao for each species.
    [Show full text]
  • Multi-Tissue Transcriptomes Yield Information on High-Altitude Adaptation and Sex-Determination in Scutiger Cf. Sikimmensis
    G C A T T A C G G C A T genes Article Multi-Tissue Transcriptomes Yield Information on High-Altitude Adaptation and Sex-Determination in Scutiger cf. sikimmensis Sylvia Hofmann 1,* , Heiner Kuhl 2, Chitra Bahadur Baniya 3 and Matthias Stöck 2 1 Department of Conservation Biology, UFZ-Helmholtz-Centre for Environmental Research, Permoserstrasse 15, 04318 Leipzig, Germany 2 Leibniz-Institute of Freshwater Ecology and Inland Fisheries, Müggelseedamm 301, D-12587 Berlin, Germany; [email protected] (H.K.); [email protected] (M.S.) 3 Central Department of Botany, Tribhuvan University, Kirtipur 44618, Kathmandu, Nepal; [email protected] * Correspondence: [email protected] Received: 30 September 2019; Accepted: 29 October 2019; Published: 31 October 2019 Abstract: The Himalayas are one of earth’s hotspots of biodiversity. Among its many cryptic and undiscovered organisms, including vertebrates, this complex high-mountain ecosystem is expected to harbour many species with adaptations to life in high altitudes. However, modern evolutionary genomic studies in Himalayan vertebrates are still at the beginning. Moreover, in organisms, like most amphibians with relatively high DNA content, whole genome sequencing remains bioinformatically challenging and no complete nuclear genomes are available for Himalayan amphibians. Here, we present the first well-annotated multi-tissue transcriptome of a Greater Himalayan species, the lazy toad Scutiger cf. sikimmensis (Anura: Megophryidae). Applying Illumina NextSeq 500 RNAseq to six tissues, we obtained 41.32 Gb of sequences, assembled to ~111,000 unigenes, translating into 54362 known genes as annotated in seven functional databases. We tested 19 genes, known to play roles in anuran and reptile adaptation to high elevations, and potentially detected diversifying selection for two (TGS1, SENP5) in Scutiger.
    [Show full text]
  • Chapter 4. Identifying Individual and Sex of Giant Pandas Through Footprint Identification Technique
    Conservation of endemic species in China by Binbin Li Nicholas School of the Environment Duke University Date: _______________________ Approved: ___________________________ Dr. Stuart Pimm, Supervisor ___________________________ Dr. Jeff Vincent ___________________________ Dr. Alex Pfaff ___________________________ Dr. Jennifer Swenson Dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Department of Chemistry in the Graduate School of Duke University 2017 i v ABSTRACT Conservation of endemic species in China by Binbin Li Environment Program Nicholas School of the Environment Duke University Date: _______________________ Approved: ___________________________ Dr. Stuart Pimm, Supervisor ___________________________ Dr. Jeff Vincent ___________________________ Dr. Alex Pfaff ___________________________ Dr. Jennifer Swenson An abstract of a dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Department of Chemistry in the Graduate School of Duke University 2017 Copyright by Binbin Li 2017 Abstract China is one of the most biodiverse countries in the world, harboring more than 10% of the species in the world. Among them, 11% of the vertebrate genera and 7% plant genera are endemic to China. During its rapid social and economic development, increasing habitat loss and fragmentation have occurred. However, it wakes up to the threats of biodiversity in recent years. Protected areas, as an essential conservation tool to reduce habitat loss and species extinction have expanded dramatically in China. Protected areas with various other concepts such as umbrella species and payment for ecosystem services have been promoted to conserve the biodiversity. However, questions remain that whether they work, how they work and how we could do better.
    [Show full text]
  • Philippine Frogs of the Genus Leptobrachium (Anura; Megophryidae): Phylogeny-Based Species Delimitation, Taxonomic Review, and Descriptions of Three New Species
    Herpetological Monographs, 23, 2009, 1–44 E 2009 by The Herpetologists’ League, Inc. PHILIPPINE FROGS OF THE GENUS LEPTOBRACHIUM (ANURA; MEGOPHRYIDAE): PHYLOGENY-BASED SPECIES DELIMITATION, TAXONOMIC REVIEW, AND DESCRIPTIONS OF THREE NEW SPECIES 1,2,3,4 1 2,3 3 RAFE M. BROWN ,CAMERON D. SILER ,ARVIN C. DIESMOS , AND ANGEL C. ALCALA 1Natural History Museum, Biodiversity Institute and Department of Ecology and Evolutionary Biology; University of Kansas, Dyche Hall, 1345 Jayhawk Blvd, Lawrence, KS 66045-7561, USA 2Herpetology Section, Zoology Division, National Museum of the Philippines, Padre Burgos Avenue, Ermita 1000, Manila, Philippines 3Silliman University-Angelo King Center for Research and Environmental Management, Marine Laboratory Building, Bantayan, Dumaguete City 6200, Philippines ABSTRACT: We review the Philippine frogs of the genus Leptobrachuim. All previous treatments have referred Philippine populations to L. hasseltii, a species we restrict to Java and Bali, Indonesia. We use external morphology, body proportions, color pattern, advertisement calls, and phylogenetic analysis of molecular sequence data to show that Philippine populations of Leptobrachium represent three distinct and formerly unrecognized evolutionary lineages, and we describe each (populations on Mindoro, Palawan, and Mindanao Island groups) as new species. Our findings accentuate the degree to which the biodiversity of Philippine amphibians is currently underestimated and in need of comprehensive review with new and varied types of data. LAGOM: Pinagbalik
    [Show full text]