Plant Pathogenic Fungi Associated with Coraebus florentinus (Coleoptera: Buprestidae) Attacks in Declining Oak Forests
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Diplodia Corticola FERNANDES
Universidade de Aveiro Departamento de Biologia 2015 ISABEL OLIVEIRA Mecanismo de infecção de Diplodia corticola FERNANDES Infection mechanism of Diplodia corticola A tese foi realizada em regime de co-tutela com a Universidade de Ghent na Bélgica. The thesis was realized in co-tutelle regime (Joint PhD) with the Ghent University in Belgium. Universidade de Aveiro Departamento de Biologia 2015 ISABEL OLIVEIRA Mecanismo de infecção de Diplodia corticola FERNANDES Infection mechanism of Diplodia corticola Tese apresentada à Universidade de Aveiro para cumprimento dos requisitos necessários à obtenção do grau de Doutor em Biologia, realizada sob a orientação científica da Doutora Ana Cristina de Fraga Esteves, Professora Auxiliar Convidada do Departamento de Biologia da Universidade de Aveiro e co-orientações do Doutor Artur Jorge da Costa Peixoto Alves, Investigador Principal do Departamento de Biologia da Universidade de Aveiro e do Doutor Bart Devreese, Professor Catedrático do Departamento de Bioquímica e Microbiologia da Universidade de Ghent. A tese foi realizada em regime de co-tutela com a Universidade de Ghent. Apoio financeiro da FCT e do Apoio financeiro da FCT e do FSE no FEDER através do programa âmbito do III Quadro Comunitário de COMPETE no âmbito do projecto de Apoio. investigação PROMETHEUS. Bolsa com referência BD/66223/2009 Bolsas com referência: PTDC/AGR-CFL/113831/2009 FCOMP-01-0124-FEDER-014096 Perguntaste-me um dia o que pretendia fazer a seguir, Respondi-te simplesmente que gostaria de ir mais além, Assim fiz! Gostava que me perguntasses de novo... Ao meu pai, You asked me one day what I intended to do next, I simply answered you that I would like to go further, I did so! I would like you ask me again.. -
Resolving Cryptic Species Complexes in Diplodia
RESOLVING CRYPTIC SPECIES COMPLEXES IN DIPLODIA Joana Filipa de Sousa Ramos Reis Lopes Dissertação para obtenção do Grau de Mestre em Engenharia Agronómica - Biotecnologia e Melhoramento de Plantas Orientador: Doutor Alan John Lander Phillips Co-orientador: Doutora Maria Helena Mendes da Costa Ferreira Correia de Oliveira Júri: Presidente: Doutora Cristina Maria Moniz Simões de Oliveira, Professora Associada do Instituto Superior de Agronomia da Universidade Técnica de Lisboa. Vogais: Doutora Maria Helena Mendes da Costa Ferreira Correia de Oliveira, Professora Associada do Instituto Superior de Agronomia da Universidade Técnica de Lisboa; Doutor Alan John Lander Phillips, Investigador Principal da Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa; Doutora Maria Cecília Nunes Farinha Rego, Investigadora Auxiliar do Laboratório de Patologia Vegetal “Veríssimo de Almeida”. Lisboa, 2008 Aos meus pais. ii Acknowledgements Firstly, I would like to thank Dr. Alan Phillips to whom I had the privilege to work with, for the suggestion of the studied theme and the possibility to work in his project. For the scientific orientation in the present work, the teachings and advices and for the support and persistency in the achievement of a coherent and consistent piece of work; I would also like to thank Prof. Dr. Helena Oliveira for the support and constant availability and especially for her human character and kindness in the most stressful moments; To Eng. Cecília Rego for the interest, attention and encouragement; To Dr. Artur Alves -
Phylogenetic Lineages in the Botryosphaeriaceae
STUDIES IN MYCOLOGY 55: 235–253. 2006. Phylogenetic lineages in the Botryosphaeriaceae Pedro W. Crous1*, Bernard Slippers2, Michael J. Wingfield2, John Rheeder3, Walter F.O. Marasas3, Alan J.L. Philips4, Artur Alves5, Treena Burgess6, Paul Barber6 and Johannes Z. Groenewald1 1Centraalbureau voor Schimmelcultures, Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD, Utrecht, The Netherlands; 2Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute, University of Pretoria, South Africa; 3PROMEC Unit, Medical Research Council, P.O. Box 19070, 7505 Tygerberg, South Africa; 4Centro de Recursos Microbiológicos, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516 Caparica, Portugal; 5Centro de Biologia Celular, Departamento de Biologia, Universidade de Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro, Portugal; 6School of Biological Sciences & Biotechnology, Murdoch University, Murdoch 6150, WA, Australia *Correspondence: Pedro W. Crous, [email protected] Abstract: Botryosphaeria is a species-rich genus with a cosmopolitan distribution, commonly associated with dieback and cankers of woody plants. As many as 18 anamorph genera have been associated with Botryosphaeria, most of which have been reduced to synonymy under Diplodia (conidia mostly ovoid, pigmented, thick-walled), or Fusicoccum (conidia mostly fusoid, hyaline, thin-walled). However, there are numerous conidial anamorphs having morphological characteristics intermediate between Diplodia and Fusicoccum, and there are several records of species outside the Botryosphaeriaceae that have anamorphs apparently typical of Botryosphaeria s.str. Recent studies have also linked Botryosphaeria to species with pigmented, septate ascospores, and Dothiorella anamorphs, or Fusicoccum anamorphs with Dichomera synanamorphs. The aim of this study was to employ DNA sequence data of the 28S rDNA to resolve apparent lineages within the Botryosphaeriaceae. -
Cork Oak Endophytic Fungi As Potential Biocontrol Agents Against Biscogniauxia Mediterranea and Diplodia Corticola
Journal of Fungi Article Cork Oak Endophytic Fungi as Potential Biocontrol agents Against Biscogniauxia mediterranea and Diplodia corticola Daniela Costa 1 , Rui M. Tavares 1, Paula Baptista 2 and Teresa Lino-Neto 1,* 1 BioSystems & Integrative Sciences Institute (BioISI), Plant Functional Biology Centre, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal; [email protected] (D.C.); [email protected] (R.M.T.) 2 Centro de Investigação de Montanha (CIMO), Instituto Politécnico de Bragança, Campus de Santa Apolónia, 5300-253 Bragança, Portugal; [email protected] * Correspondence: [email protected] Received: 19 October 2020; Accepted: 12 November 2020; Published: 14 November 2020 Abstract: An increase in cork oak diseases caused by Biscogniauxia mediterranea and Diplodia corticola has been reported in the last decade. Due to the high socio-economic and ecologic importance of this plant species in the Mediterranean Basin, the search for preventive or treatment measures to control these diseases is an urgent need. Fungal endophytes were recovered from cork oak trees with different disease severity levels, using culture-dependent methods. The results showed a higher number of potential pathogens than beneficial fungi such as cork oak endophytes, even in healthy plants. The antagonist potential of a selection of eight cork oak fungal endophytes was tested against B. mediterranea and D. corticola by dual-plate assays. The tested endophytes were more efficient in inhibiting D. corticola than B. mediterranea growth, but Simplicillium aogashimaense, Fimetariella rabenhorstii, Chaetomium sp. and Alternaria alternata revealed a high potential to inhibit the growth of both. Simplicillium aogashimaense caused macroscopic and microscopic mycelial/hyphal deformations and presented promising results in controlling both phytopathogens’ growth in vitro. -
Botryosphaeriaceae Species Associated with Cankers and Dieback of Grapevine and Other Woody Hosts in Agricultural and Forestry Ecosystems
UNIVERSITÀ DEGLI STUDI DI SASSARI SCUOLA DI DOTTORATO DI RICERCA Scienze e Biotecnologie dei Sistemi Agrari e Forestali e delle Produzioni Alimentari Indirizzo Monitoraggio e Controllo degli Ecosistemi Forestali in Ambiente Mediterraneo Ciclo XXVII Botryosphaeriaceae species associated with cankers and dieback of grapevine and other woody hosts in agricultural and forestry ecosystems dr. Antonio Deidda Direttore della Scuola prof. Alba Pusino Referente di Indirizzo prof. Ignazio Floris Docente Guida prof. Salvatorica Serra Tutor dott. Benedetto T. Linaldeddu Anno accademico 2013 - 2014 UNIVERSITÀ DEGLI STUDI DI SASSARI SCUOLA DI DOTTORATO DI RICERCA Scienze e Biotecnologie dei Sistemi Agrari e Forestali e delle Produzioni Alimentari Indirizzo Monitoraggio e Controllo degli Ecosistemi Forestali in Ambiente Mediterraneo Ciclo XXVII La presente tesi è stata prodotta durante la frequenza del corso di dottorato in “Scienze e Biotecnologie dei Sistemi Agrari e Forestali e delle Produzioni Alimentari” dell’Università degli Studi di Sassari, a.a. 2013/2014 - XXVII ciclo, con il supporto di una borsa di studio finanziata con le risorse del P.O.R. SARDEGNA F.S.E. 2007-2013 - Obiettivo competitività regionale e occupazione, Asse IV Capitale umano, Linea di Attività l.3.1 “Finanziamento di corsi di dottorato finalizzati alla formazione di capitale umano altamente specializzato, in particolare per i settori dell’ICT, delle nanotecnologie e delle biotecnologie, dell'energia e dello sviluppo sostenibile, dell'agroalimentare e dei materiali tradizionali”. Antonio Deidda gratefully acknowledges Sardinia Regional Government for the financial support of his PhD scholarship (P.O.R. Sardegna F.S.E. Operational Programme of the Autonomous Region of Sardinia, European Social Fund 2007-2013 - Axis IV Human Resources, Objective l.3, Line of Activity l.3.1.) Table of contents Table of contents Chapter 1. -
Mycosphere Notes 169–224 Article
Mycosphere 9(2): 271–430 (2018) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/9/2/8 Copyright © Guizhou Academy of Agricultural Sciences Mycosphere notes 169–224 Hyde KD1,2, Chaiwan N2, Norphanphoun C2,6, Boonmee S2, Camporesi E3,4, Chethana KWT2,13, Dayarathne MC1,2, de Silva NI1,2,8, Dissanayake AJ2, Ekanayaka AH2, Hongsanan S2, Huang SK1,2,6, Jayasiri SC1,2, Jayawardena RS2, Jiang HB1,2, Karunarathna A1,2,12, Lin CG2, Liu JK7,16, Liu NG2,15,16, Lu YZ2,6, Luo ZL2,11, Maharachchimbura SSN14, Manawasinghe IS2,13, Pem D2, Perera RH2,16, Phukhamsakda C2, Samarakoon MC2,8, Senwanna C2,12, Shang QJ2, Tennakoon DS1,2,17, Thambugala KM2, Tibpromma, S2, Wanasinghe DN1,2, Xiao YP2,6, Yang J2,16, Zeng XY2,6, Zhang JF2,15, Zhang SN2,12,16, Bulgakov TS18, Bhat DJ20, Cheewangkoon R12, Goh TK17, Jones EBG21, Kang JC6, Jeewon R19, Liu ZY16, Lumyong S8,9, Kuo CH17, McKenzie EHC10, Wen TC6, Yan JY13, Zhao Q2 1 Key Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan, P.R. China 2 Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 3 A.M.B. Gruppo Micologico Forlivese ‘‘Antonio Cicognani’’, Via Roma 18, Forlı`, Italy 4 A.M.B. Circolo Micologico ‘‘Giovanni Carini’’, C.P. 314, Brescia, Italy 5 Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan, P.R. China 6 Engineering and Research Center for Southwest Bio-Pharmaceutical Resources of national education Ministry of Education, Guizhou University, Guiyang, Guizhou Province 550025, P.R. -
Species of Colletotrichum on Agavaceae
mycological research 110 (2006) 1395–1408 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/mycres Species of Colletotrichum on Agavaceae David F. FARRa, M. Catherine AIMEa, Amy Y. ROSSMANa,*, Mary E. PALMb aSystematic Botany & Mycology Laboratory, Agricultural Research Service, United States Department of Agriculture, Rm 304, B011A, Beltsville, Maryland, USA bSystematic Botany & Mycology Laboratory, Animal and Plant Health Inspection Service, United States Department of Agriculture, Rm 304, B011A, Beltsville, Maryland, USA article info abstract Article history: Species of Colletotrichum cause diseases on a wide range of hosts, frequently infecting Received 22 December 2005 plants in the Agavaceae (monocotyledons: Liliales). Three species of Colletotrichum restricted Received in revised form to the Agavaceae were detected through morphological studies of specimens and molecular 30 June 2006 sequence analyses of the LSU of the nu-rDNA and the ITS region of the nu-rDNA from cul- Accepted 1 September 2006 tures. Colletotrichum agaves on Agave is fully described and illustrated. Colletotrichum dracae- Published online 28 November 2006 nophilum is described as a new species for isolates having long conidia and occurring on Corresponding Editor: Dracaena sanderiana from China. Colletotrichum phormii and Glomerella phormii are deter- Brenda Wingfield mined to be the correct scientific names for the asexual and sexual states, respectively, of a species commonly referred to as C. rhodocyclum and G. phacidiomorpha occurring mainly Keywords: on Phormium. In addition, C. gloeosporioides and C. boninense were isolated from plants in the Anthracnose Agavaceae. All species of Colletotrichum described on Agavaceae were evaluated based on Molecular phylogeny type specimens. A key to the five species of Colletotrichum on Agavaceae is included. -
ANABELA RODRIGUES LOPES Diversidade, Espécies Crípticas E Estratégias Sexuais Em Fungos Da Ordem Botryosphaeriales Diversity
Universidade de Aveiro Departamento de Biologia 2018 ANABELA Diversidade, espécies crípticas e estratégias RODRIGUES sexuais em fungos da ordem Botryosphaeriales LOPES Diversity, cryptic species and sexual strategies in fungi of the order Botryosphaeriales Universidade de Aveiro Departamento de Biologia 2018 ANABELA Diversidade, espécies crípticas e estratégias sexuais RODRIGUES em fungos da ordem Botryosphaeriales LOPES Diversity, cryptic species and sexual strategies in fungi of the order Botryosphaeriales Tese apresentada à Universidade de Aveiro para cumprimento dos requisitos necessários à obtenção do grau de Doutor em Biologia, realizada s ob a orientação científica do Doutor Artur Jorge da Costa Peixoto Alves, Investigador Principal do Departamento de Biologia da Universidade de Aveiro e do Doutor Alan John Lander Phillips, Investigador do Instituto de Biossistemas e Ciências Integrativas da Faculdade de Ciências da Universidade de Lisboa. Apoio financeiro da FCT e do FEDER Apoio financeiro da FCT e do FSE no através do programa COMPETE no âmbito do III Quadro Comunitário de âmbito do projecto de investigação Apoio. ALIEN. Bolsas com referência: Bolsa de Doutoramento: PTDC/AGR-PRO/2183/2014 SFRH/BD/85615/2012 POCI-01-0145-FEDER-016788 Para ti querida mãe… Por muitas conquistas que faça sem ti a felicidade nunca será completa. e Para o mentor do MicroLab, o muito estimado Professor António Correia. o júri Doutor Manuel João Senos Matias presidente Professor Catedrático da Universidade de Aveiro Doutor Nelson Manuel Viana da Silva -
Taxonomy, Phylogeny and Identification of Botryosphaeriaceae Associated with Pome and Stone Fruit Trees in South Africa and Other Regions of the World
openUP (March 2007) Taxonomy, phylogeny and identification of Botryosphaeriaceae associated with pome and stone fruit trees in South Africa and other regions of the world • B. Slippers a*, • W. A. Smit c, • P. W. Crous b,d, • T. A. Coutinho b, • B. D. Wingfield a and • M. J. Wingfield a aDepartment of Genetics, bDepartment of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute, Faculty of Natural and Agricultural Sciences, University of Pretoria, Pretoria, South Africa; cBiotechnology Division, ARC Infruitec-Nietvoorbij, Private Bag X5013, Stellenbosch, 7599, South Africa; and dCentraalbureau voor Schimmelcultures, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands [Figures and Tables at the bottom of the document] Abstract Species of Botryosphaeria are well-recognized pathogens of pome and stone fruit trees. The taxonomy of these fungi, however, has been confused in the past. Recent taxonomic changes to the Botryosphaeriaceae further influence the literature pertaining to these fungi. This study reviews the taxonomic status of Botryosphaeriaceae associated with fruit tree diseases, identifies them in South Africa and elsewhere, and develops a reliable identification technique for them. Comparisons were made using DNA sequence data from the nuclear ITS rRNA operon and anamorph morphology. These analyses distinguished six clades amongst isolates associated with fruit tree diseases, corresponding to Neofusicoccum ribis (= B. ribis), N. parvum (= B. parva), N. australe (= B. australis), B. dothidea, Diplodia mutila (= B. stevensii) and ‘Botryosphaeria’ obtusa (the genus Botryosphaeria is no longer available for the fungus known as B. obtusa, but a new name has not been proposed yet). Isolates from fruit trees in South openUP (March 2007) Africa were grouped in the N. -
Etiology of Botryosphaeria Stem Blight on Southern Highbush Blueberries in Florida and Quantification of Stem Blight Resistance in Breeding Stock
ETIOLOGY OF BOTRYOSPHAERIA STEM BLIGHT ON SOUTHERN HIGHBUSH BLUEBERRIES IN FLORIDA AND QUANTIFICATION OF STEM BLIGHT RESISTANCE IN BREEDING STOCK By AMANDA FAITH WATSON A THESIS PRESENTED TO THE GRADUATE SCHOOL OF THE UNIVERSITY OF FLORIDA IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER OF SCIENCE UNIVERSITY OF FLORIDA 2008 1 © 2008 Amanda Faith Watson 2 To my family and friends for all their gifts of roots and wings 3 ACKNOWLEDGMENTS I thank Jon Wright for his patience, love, kindness, humor, and strength throughout this process. I thank my parents for their guidance and support. I thank my sister for her humor and encouragement. I thank my major advisor Dr. Harmon and my committee members, for their instruction and patience. I thank Ms. Patricia Hill and Ms. Carrie Yankee for their willingness to help. I thank the Florida Blueberry Growers association for their funding and project support. 4 TABLE OF CONTENTS page ACKNOWLEDGMENTS ...............................................................................................................4 LIST OF TABLES ...........................................................................................................................7 LIST OF FIGURES .........................................................................................................................8 ABSTRACT .....................................................................................................................................9 CHAPTER 1 LITERATURE REVIEW .......................................................................................................11 -
Evaluating Species in <I> Botryosphaeriales</I>
Persoonia 46, 2021: 63–115 ISSN (Online) 1878-9080 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE https://doi.org/10.3767/persoonia.2021.46.03 Evaluating species in Botryosphaeriales W. Zhang1, J.Z. Groenewald2, L. Lombard2, R.K. Schumacher 3, A.J.L. Phillips4, P.W. Crous2,5,* Key words Abstract The Botryosphaeriales (Dothideomycetes) includes numerous endophytic, saprobic, and plant pathogenic species associated with a wide range of symptoms, most commonly on woody plants. In a recent phylogenetic canker and leaf spot pathogens treatment of 499 isolates in the culture collection (CBS) of the Westerdijk Institute, we evaluated the families and Multi-Locus Sequence Typing (MLST) genera accommodated in this order of important fungi. The present study presents multigene phylogenetic analyses new taxa for an additional 230 isolates, using ITS, tef1, tub2, LSU and rpb2 loci, in combination with morphological data. systematics Based on these data, 58 species are reduced to synonymy, and eight novel species are described. They include Diplodia afrocarpi (Afrocarpus, South Africa), Dothiorella diospyricola (Diospyros, South Africa), Lasiodiplodia acaciae (Acacia, Indonesia), Neofusicoccum podocarpi (Podocarpus, South Africa), N. rapaneae (Rapanea, South Africa), Phaeobotryon ulmi (Ulmus, Germany), Saccharata grevilleae (Grevillea, Australia) and S. hakeiphila (Hakea, Australia). The results have clarified the identity of numerous isolates that lacked Latin binomials or had been deposited under incorrect names in the CBS collection in the past. They also provide a solid foundation for more in-depth future studies on taxa in the order. Sequences of the tef1, tub2 and rpb2 genes proved to be the most reliable markers. At the species level, results showed that the most informative genes were inconsistent, but that a combination of four candidate barcodes (ITS, tef1, tub2 and rpb2) provided reliable resolution. -
Carla Bernardete Rodrigues Barradas Alterações Climáticas E Doenças Associadas a Botryosphaeriaceae Em Eucalyptus Em Portuga
Universidade de Aveiro Departamento de Biologia 2016 Carla Bernardete Alterações climáticas e doenças associadas a Rodrigues Barradas Botryosphaeriaceae em Eucalyptus em Portugal Climate changes and Botryosphaeriaceae diseases of Eucalyptus in Portugal Universidade de Aveiro Departamento de Biologia 2016 Carla Bernardete Alterações climáticas e doenças associadas a Rodrigues Barradas Botryosphaeriaceae em Eucalyptus em Portugal Climate changes and Botryosphaeriaceae diseases of Eucalyptus in Portugal Tese apresentada à Universidade de Aveiro para cumprimento dos requisitos necessários à obtenção do grau de Doutor em Biologia, realizada sob a orientação científica do Doutor Artur Jorge da Costa Peixoto Alves, Investigador Principal do Departamento de Biologia da Universidade de Aveiro, do Professor Doutor António Carlos Matias Correia, Professor Catedrático do Departamento de Biologia da Universidade de Aveiro e do Doutor Alan John Lander Phillips, Investigador Principal da Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa Apoio financeiro da FCT e do FEDER Apoio financeiro da Fundação para a através do programa COMPETE no âmbito Ciência e Tecnologia e do Fundo Social do projeto de investigação PANDORA. Europeu no âmbito do III Quadro Comunitário de Apoio. Bolsas com referência: PTDC/AGR-FOR/3807/2012 Bolsa de Doutoramento: FCOMP-01-0124-FEDER-027979 SFRH/BD/77939/2011 Ao Professor Doutor António Correia (in memoriam) Esta tese ficará para sempre incompleta sem o seu último contributo. o júri presidente Doutor Artur da