POLD3 Is Haploinsufficient for DNA Replication in Mice
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Telomeres.Pdf
Telomeres Secondary article Elizabeth H Blackburn, University of California, San Francisco, California, USA Article Contents . Introduction Telomeres are specialized DNA–protein structures that occur at the ends of eukaryotic . The Replication Paradox chromosomes. A special ribonucleoprotein enzyme called telomerase is required for the . Structure of Telomeres synthesis and maintenance of telomeric DNA. Synthesis of Telomeric DNA by Telomerase . Functions of Telomeres Introduction . Telomere Homeostasis . Alternatives to Telomerase-generated Telomeric DNA Telomeres are the specialized chromosomal DNA–protein . Evolution of Telomeres and Telomerase structures that comprise the terminal regions of eukaryotic chromosomes. As discovered through studies of maize and somes. One critical part of this protective function is to fruitfly chromosomes in the 1930s, they are required to provide a means by which the linear chromosomal DNA protect and stabilize the genetic material carried by can be replicated completely, without the loss of terminal eukaryotic chromosomes. Telomeres are dynamic struc- DNA nucleotides from the 5’ end of each strand of this tures, with their terminal DNA being constantly built up DNA. This is necessary to prevent progressive loss of and degraded as dividing cells replicate their chromo- terminal DNA sequences in successive cycles of chromo- somes. One strand of the telomeric DNA is synthesized by somal replication. a specialized ribonucleoprotein reverse transcriptase called telomerase. Telomerase is required for both -
Iron Depletion Reduces Abce1 Transcripts While Inducing The
Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 22 October 2019 doi:10.20944/preprints201910.0252.v1 1 Research Article 2 Iron depletion Reduces Abce1 Transcripts While 3 Inducing the Mitophagy Factors Pink1 and Parkin 4 Jana Key 1,2, Nesli Ece Sen 1, Aleksandar Arsovic 1, Stella Krämer 1, Robert Hülse 1, Suzana 5 Gispert-Sanchez 1 and Georg Auburger 1,* 6 1 Experimental Neurology, Goethe University Medical School, 60590 Frankfurt am Main; 7 2 Faculty of Biosciences, Goethe-University Frankfurt am Main, Germany 8 * Correspondence: [email protected] 9 10 Abstract: Lifespan extension was recently achieved in Caenorhabditis elegans nematodes by 11 mitochondrial stress and mitophagy, triggered via iron depletion. Conversely in man, deficient 12 mitophagy due to Pink1/Parkin mutations triggers iron accumulation in patient brain and limits 13 survival. We now aimed to identify murine fibroblast factors, which adapt their mRNA expression 14 to acute iron manipulation, relate to mitochondrial dysfunction and may influence survival. After 15 iron depletion, expression of the plasma membrane receptor Tfrc with its activator Ireb2, the 16 mitochondrial membrane transporter Abcb10, the heme-release factor Pgrmc1, the heme- 17 degradation enzyme Hmox1, the heme-binding cholesterol metabolizer Cyp46a1, as well as the 18 mitophagy regulators Pink1 and Parkin showed a negative correlation to iron levels. After iron 19 overload, these factors did not change expression. Conversely, a positive correlation of mRNA levels 20 with both conditions of iron availability was observed for the endosomal factors Slc11a2 and Steap2, 21 as well as for the iron-sulfur-cluster (ISC)-containing factors Ppat, Bdh2 and Nthl1. -
Replication Stress: an Achilles' Heel of Glioma Cancer Stem–Like Cells Meredith A
Published OnlineFirst November 29, 2018; DOI: 10.1158/0008-5472.CAN-18-2439 Cancer Review Research Replication Stress: An Achilles' Heel of Glioma Cancer Stem–like Cells Meredith A. Morgan1, and Christine E. Canman2 Abstract Glioblastoma (GBM) is a highly aggressive form of cancer that Carruthers and colleagues investigated DNA replication stress as is resistant to standard therapy with concurrent radiation and an underlying mechanism responsible for upregulation of the temozolomide, two agents that work by inducing DNA damage. DDR and hence the radiation resistance of glioma stem–like An underlying causeof this resistance may be a subpopulation of cells. Furthermore, the authors explore the efficacy of combined cancer stem–like cells that display a heightened DNA damage ataxia telangiectasia and Rad3-related kinase and PARP inhibi- response (DDR). Although this DDR represents an attractive tors as a strategy to leverage these mechanisms and overcome therapeutic target for overcoming the resistance of GBMs to radiation resistance. Cancer Res; 78(24); 6713–6. Ó2018 AACR. radiotherapy, until now, the cause of this DDR upregulation has See related article by Carruthers and colleagues, Cancer Res; not been understood. In a previous issue of Cancer Research, 78(17); 5060–71. The cancer stem cell theory states that a small subpopulation of of replication factories compared with non-GSC populations tumor cells possess unique self-renewal properties that are capa- (6). These observations pointed to elevated levels of RS as ble of seeding new tumors and are a source of regrowth following causative of DDR activation in untreated GSCs, a hypothesis therapy (1). Glioma stem–like cells (GSC) are defined as CD133- supported by the high levels of RS in glioblastoma (GBM; positive cells that can initiate new tumors in mice (2). -
Congenital Microcephaly
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Sussex Research Online American Journal of Medical Genetics Part C (Seminars in Medical Genetics) ARTICLE Congenital Microcephaly DIANA ALCANTARA AND MARK O'DRISCOLL* The underlying etiologies of genetic congenital microcephaly are complex and multifactorial. Recently, with the exponential growth in the identification and characterization of novel genetic causes of congenital microcephaly, there has been a consolidation and emergence of certain themes concerning underlying pathomechanisms. These include abnormal mitotic microtubule spindle structure, numerical and structural abnormalities of the centrosome, altered cilia function, impaired DNA repair, DNA Damage Response signaling and DNA replication, along with attenuated cell cycle checkpoint proficiency. Many of these processes are highly interconnected. Interestingly, a defect in a gene whose encoded protein has a canonical function in one of these processes can often have multiple impacts at the cellular level involving several of these pathways. Here, we overview the key pathomechanistic themes underlying profound congenital microcephaly, and emphasize their interconnected nature. © 2014 Wiley Periodicals, Inc. KEY WORDS: cell division; mitosis; DNA replication; cilia How to cite this article: Alcantara D, O'Driscoll M. 2014. Congenital microcephaly. Am J Med Genet Part C Semin Med Genet 9999:1–16. INTRODUCTION mid‐gestation although glial cell division formation of the various cortical layers. and consequent brain volume enlarge- Furthermore, differentiating and devel- Congenital microcephaly, an occipital‐ ment does continue after birth [Spalding oping neurons must migrate to their frontal circumference of equal to or less et al., 2005]. Impaired neurogenesis is defined locations to construct the com- than 2–3 standard deviations below the therefore most obviously reflected clini- plex architecture and laminar layered age‐related population mean, denotes cally as congenital microcephaly. -
Bioinformatics-Based Screening of Key Genes for Transformation of Liver
Jiang et al. J Transl Med (2020) 18:40 https://doi.org/10.1186/s12967-020-02229-8 Journal of Translational Medicine RESEARCH Open Access Bioinformatics-based screening of key genes for transformation of liver cirrhosis to hepatocellular carcinoma Chen Hao Jiang1,2, Xin Yuan1,2, Jiang Fen Li1,2, Yu Fang Xie1,2, An Zhi Zhang1,2, Xue Li Wang1,2, Lan Yang1,2, Chun Xia Liu1,2, Wei Hua Liang1,2, Li Juan Pang1,2, Hong Zou1,2, Xiao Bin Cui1,2, Xi Hua Shen1,2, Yan Qi1,2, Jin Fang Jiang1,2, Wen Yi Gu4, Feng Li1,2,3 and Jian Ming Hu1,2* Abstract Background: Hepatocellular carcinoma (HCC) is the most common type of liver tumour, and is closely related to liver cirrhosis. Previous studies have focussed on the pathogenesis of liver cirrhosis developing into HCC, but the molecular mechanism remains unclear. The aims of the present study were to identify key genes related to the transformation of cirrhosis into HCC, and explore the associated molecular mechanisms. Methods: GSE89377, GSE17548, GSE63898 and GSE54236 mRNA microarray datasets from Gene Expression Omni- bus (GEO) were analysed to obtain diferentially expressed genes (DEGs) between HCC and liver cirrhosis tissues, and network analysis of protein–protein interactions (PPIs) was carried out. String and Cytoscape were used to analyse modules and identify hub genes, Kaplan–Meier Plotter and Oncomine databases were used to explore relationships between hub genes and disease occurrence, development and prognosis of HCC, and the molecular mechanism of the main hub gene was probed using Kyoto Encyclopedia of Genes and Genomes(KEGG) pathway analysis. -
DNA Polymerase Δ Proofreads Errors Made by DNA Polymerase E
DNA polymerase δ proofreads errors made by DNA polymerase e Chelsea R. Bulocka, Xuanxuan Xinga,1, and Polina V. Shcherbakovaa,2 aEppley Institute for Research in Cancer and Allied Diseases, Fred & Pamela Buffett Cancer Center, University of Nebraska Medical Center, Omaha, NE 68198 Edited by Sue Jinks-Robertson, Duke University School of Medicine, Durham, NC, and approved February 5, 2020 (received for review October 9, 2019) − During eukaryotic replication, DNA polymerases e (Pole) and δ analogous Pole-exo variant (2, 17–25). Furthermore, haploid (Polδ) synthesize the leading and lagging strands, respectively. In yeast deficient in Polδ proofreading do not survive when DNA a long-known contradiction to this model, defects in the fidelity of mismatch repair (MMR) is also inactivated with the death at- Pole have a much weaker impact on mutagenesis than analogous tributed to an excessive level of mutagenesis (26). In contrast, yeast Polδ defects. It has been previously proposed that Polδ contributes lacking both proofreading by Pole and MMR are viable, and while more to mutation avoidance because it proofreads mismatches the mutation rate in these strains is high, it does not reach the created by Pole in addition to its own errors. However, direct lethal threshold (19, 21, 22, 25, 27). Similarly, when identical ty- evidence for this model was missing. We show that, in yeast, rosine to alanine substitutions were made in the conserved region the mutation rate increases synergistically when a Pole nucleotide III of the polymerase domains (Polδ-Y708A and Pole-Y831A), the selectivity defect is combined with a Polδ proofreading defect, dem- Polδ variant produced a much stronger mutator effect than the onstrating extrinsic proofreading of Pole errors by Polδ. -
NAR Breakthrough Article
Published online 29 November 2016 Nucleic Acids Research, 2017, Vol. 45, No. 1 1–14 doi: 10.1093/nar/gkw1046 NAR Breakthrough Article Division of labor among Mycobacterium smegmatis RNase H enzymes: RNase H1 activity of RnhA or RnhC is essential for growth whereas RnhB and RnhA guard against killing by hydrogen peroxide in stationary phase Richa Gupta1, Debashree Chatterjee2, Michael S. Glickman1,3,* and Stewart Shuman2,* 1Immunology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA, 2Molecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA and 3Division of Infectious Diseases, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA Received September 14, 2016; Revised October 16, 2016; Editorial Decision October 19, 2016; Accepted October 20, 2016 ABSTRACT pathogenic mycobacteria, as a candidate drug dis- covery target for tuberculosis and leprosy. RNase H enzymes sense the presence of ribonu- cleotides in the genome and initiate their removal by incising the ribonucleotide-containing strand of INTRODUCTION an RNA:DNA hybrid. Mycobacterium smegmatis en- codes four RNase H enzymes: RnhA, RnhB, RnhC There is rising interest in the biological impact of ribonu- cleotides embedded in bacterial chromosomes during DNA and RnhD. Here, we interrogate the biochemical ac- replication and repair, and in the pathways of ribonu- tivity and nucleic acid substrate specificity of RnhA. cleotide surveillance that deal with such ‘lesions’ (1). Bacte- We report that RnhA (like RnhC characterized pre- rial polymerases display a range of fidelities with respect to viously) is an RNase H1-type magnesium-dependent discrimination of dNTP and rNTP substrates. -
Functional Characterization of the DNA Polymerase Epsilon and Its Involvement in the Maintenance of Genome Integrity in Arabidopsis Jose Antonio Pedroza-Garcia
Functional characterization of the DNA Polymerase epsilon and its involvement in the maintenance of genome integrity in Arabidopsis Jose Antonio Pedroza-Garcia To cite this version: Jose Antonio Pedroza-Garcia. Functional characterization of the DNA Polymerase epsilon and its involvement in the maintenance of genome integrity in Arabidopsis. Plants genetics. Université Paris Saclay (COmUE), 2016. English. NNT : 2016SACLS248. tel-03092326 HAL Id: tel-03092326 https://tel.archives-ouvertes.fr/tel-03092326 Submitted on 2 Jan 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. NNT : 2016SACLS248 THESE DE DOCTORAT DE L’UNIVERSITE PARIS-SACLAY, préparée à l’Université Paris-Sud ÉCOLE DOCTORALE N° 567 Sciences du Végétal : du Gène à l’Ecosystème Spécialité de doctorat: Biologie Par M. José Antonio Pedroza-Garcia Functional characterization of the DNA Polymerase epsilon and its involvement in the maintenance of genome integrity in Arabidopsis Thèse présentée et soutenue à Orsay, le 22 septembre 2016 : Composition du Jury : M. Frugier, Florian Directeur de Recherche, CNRS Président Mme Gallego, Maria Professeure, Université Blaise Pascal Rapporteur M. Bendahmane, Mohammed Directeur de Recherche, INRA Rapporteur Mme Mézard, Christine Directrice de Recherche, CNRS Examinatrice Mme Chabouté, Marie-Edith Directrice de Recherche, CNRS Examinatrice Mme Raynaud, Cécile Chargée de Recherche, CNRS Directrice de thèse Acknowledgments First, I would like to express my huge gratitude to my supervisor, Cécile Raynaud. -
Polymerase Δ Deficiency Causes Syndromic Immunodeficiency with Replicative Stress
Polymerase δ deficiency causes syndromic immunodeficiency with replicative stress Cecilia Domínguez Conde, … , Mirjam van der Burg, Kaan Boztug J Clin Invest. 2019. https://doi.org/10.1172/JCI128903. Research Article Genetics Immunology Graphical abstract Find the latest version: https://jci.me/128903/pdf The Journal of Clinical Investigation RESEARCH ARTICLE Polymerase δ deficiency causes syndromic immunodeficiency with replicative stress Cecilia Domínguez Conde,1,2 Özlem Yüce Petronczki,1,2,3 Safa Baris,4,5 Katharina L. Willmann,1,2 Enrico Girardi,2 Elisabeth Salzer,1,2,3,6 Stefan Weitzer,7 Rico Chandra Ardy,1,2,3 Ana Krolo,1,2,3 Hanna Ijspeert,8 Ayca Kiykim,4,5 Elif Karakoc-Aydiner,4,5 Elisabeth Förster-Waldl,9 Leo Kager,6 Winfried F. Pickl,10 Giulio Superti-Furga,2,11 Javier Martínez,7 Joanna I. Loizou,2 Ahmet Ozen,4,5 Mirjam van der Burg,8 and Kaan Boztug1,2,3,6 1Ludwig Boltzmann Institute for Rare and Undiagnosed Diseases, 2CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, and 3St. Anna Children’s Cancer Research Institute (CCRI), Vienna, Austria. 4Pediatric Allergy and Immunology, Marmara University, Faculty of Medicine, Istanbul, Turkey. 5Jeffrey Modell Diagnostic Center for Primary Immunodeficiency Diseases, Marmara University, Istanbul, Turkey. 6St. Anna Children’s Hospital, Department of Pediatrics and Adolescent Medicine, Vienna, Austria. 7Center for Medical Biochemistry, Medical University of Vienna, Vienna, Austria. 8Department of Pediatrics, Laboratory for Immunology, Leiden University Medical Centre, Leiden, Netherlands. 9Department of Neonatology, Pediatric Intensive Care and Neuropediatrics, Department of Pediatrics and Adolescent Medicine, 10Institute of Immunology, Center for Pathophysiology, Infectiology and Immunology, and 11Center for Physiology and Pharmacology, Medical University of Vienna, Vienna, Austria. -
Germline POLE Mutation in a Child with Hypermutated Medulloblastoma and Features of Constitutional Mismatch Repair Deficiency
Downloaded from molecularcasestudies.cshlp.org on October 6, 2021 - Published by Cold Spring Harbor Laboratory Press Germline POLE mutation in a child with hypermutated medulloblastoma and features of constitutional mismatch repair deficiency Holly Lindsay1,2, Sarah Scollon1,2, Jacquelyn Reuther3, Horatiu Voicu3, Surya P. Rednam1,2, Frank Y. Lin1,2, Kevin E. Fisher3, Murali Chintagumpala1,2, Adekunle M. Adesina1,3, D. Will Parsons1-4, Sharon E. Plon1-4, Angshumoy Roy1,3 1Department of Pediatrics, Division of Hematology-Oncology, Baylor College of Medicine, Houston, Texas 77030, USA; 2Texas Children’s Cancer Center, Texas Children’s Hospital, Houston, Texas 77030, USA; 3Department of Pathology & Immunology, Baylor College of Medicine and Texas Children’s Hospital, Houston, Texas 77030, USA; 4Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas 77030, USA Corresponding author: Angshumoy Roy, MD, PhD Assistant Professor of Pathology & Immunology and Pediatrics Baylor College of Medicine 1102 Bates Avenue, FT 830 Houston, TX 77030 832-824-0901 – Work 832-825-0132 – Fax [email protected] Running title: Germline POLE mutation in a patient with CMMRD 1 Downloaded from molecularcasestudies.cshlp.org on October 6, 2021 - Published by Cold Spring Harbor Laboratory Press ABSTRACT Ultra-hypermutation (>100 mutations/Mb) is rare in childhood cancer genomes and has been primarily reported in patients with constitutional mismatch repair deficiency (CMMRD) caused by biallelic germline mismatch repair (MMR) gene mutations. We report a 5-year-old child with classic clinical features of CMMRD and an ultra- hypermutated medulloblastoma with retained MMR protein expression and absence of germline MMR mutations. Mutational signature analysis of tumor panel sequencing data revealed a canonical DNA polymerase-deficiency-associated signature, prompting further genetic testing that uncovered a germline POLE p.A456P missense variant, which has previously been reported as a recurrent somatic driver mutation in cancers. -
CHK1 Inhibition Is Synthetically Lethal with Loss of B-Family DNA Polymerase Function in Human Lung and Colorectal Cancer Cells
Author Manuscript Published OnlineFirst on March 11, 2020; DOI: 10.1158/0008-5472.CAN-19-1372 Author manuscripts have been peer reviewed and accepted for publication but have not yet been edited. 1 Title: CHK1 inhibition is synthetically lethal with loss of B-family DNA polymerase function in human lung and colorectal cancer cells. Author List: Rebecca F. Rogers1, Mike I. Walton1, Daniel L. Cherry2, Ian Collins1, Paul A. Clarke1, Michelle D. Garrett2* and Paul Workman1* Affiliations: 1Cancer Research UK Cancer Therapeutics Unit, The Institute of Cancer Research, London, SM2 5NG, UK 2 School of Biosciences, Stacey Building, University of Kent, Canterbury, Kent, CT2 7NJ, UK Running title: Synthetic lethality of CHK1 and DNA polymerase inhibition *Corresponding authors: Michelle D Garrett and Paul Workman Corresponding Author Information Michelle D Garrett School of Biosciences, Stacey Building, University of Kent, Canterbury, Kent, CT2 7NJ, UK. Email: [email protected] Phone: +44 (0)1227 816140 Paul Workman Cancer Research UK Cancer Therapeutics Unit, The Institute of Cancer Research, London, SM2 5NG, UK. Email: [email protected] Phone: +44 (0)20 7153 5209 Conflict of interest statement: IC, MDG, MIW, RFR, PC and PW are current or past employees of The Institute of Cancer Research, which has a commercial interest in the discovery and development of CHK1 inhibitors, including SRA737, and operates a rewards-to- inventors scheme. IC, MDG and MIW have been involved in a commercial collaboration on CHK1 inhibitors with Sareum Ltd and intellectual property arising from the program, including SRA737, was licensed to Sierra Oncology. IC is a consultant for Sierra Oncology, Adorx Ltd, Epidarex LLP and Enterprise Therapeutics Ltd and holds equity in Monte Rosa Therapeutics AG. -
DNA Polymerases at the Eukaryotic Replication Fork Thirty Years After: Connection to Cancer
cancers Review DNA Polymerases at the Eukaryotic Replication Fork Thirty Years after: Connection to Cancer Youri I. Pavlov 1,2,* , Anna S. Zhuk 3 and Elena I. Stepchenkova 2,4 1 Eppley Institute for Research in Cancer and Allied Diseases and Buffett Cancer Center, University of Nebraska Medical Center, Omaha, NE 68198, USA 2 Department of Genetics and Biotechnology, Saint-Petersburg State University, 199034 Saint Petersburg, Russia; [email protected] 3 International Laboratory of Computer Technologies, ITMO University, 197101 Saint Petersburg, Russia; [email protected] 4 Laboratory of Mutagenesis and Genetic Toxicology, Vavilov Institute of General Genetics, Saint-Petersburg Branch, Russian Academy of Sciences, 199034 Saint Petersburg, Russia * Correspondence: [email protected] Received: 30 September 2020; Accepted: 13 November 2020; Published: 24 November 2020 Simple Summary: The etiology of cancer is linked to the occurrence of mutations during the reduplication of genetic material. Mutations leading to low replication fidelity are the culprits of many hereditary and sporadic cancers. The archetype of the current model of replication fork was proposed 30 years ago. In the sequel to our 2010 review with the words “years after” in the title inspired by A. Dumas’s novels, we go over new developments in the DNA replication field and analyze how they help elucidate the effects of the genetic variants of DNA polymerases on cancer. Abstract: Recent studies on tumor genomes revealed that mutations in genes of replicative DNA polymerases cause a predisposition for cancer by increasing genome instability. The past 10 years have uncovered exciting details about the structure and function of replicative DNA polymerases and the replication fork organization.