Maphroditic Flatworm Dugesia Gonocephala (Tricladida, Paludicola)

Total Page:16

File Type:pdf, Size:1020Kb

Maphroditic Flatworm Dugesia Gonocephala (Tricladida, Paludicola) EVIDENCE AGAINST SELF-FERTILIZATION IN THE HER- MAPHRODITIC FLATWORM DUGESIA GONOCEPHALA (TRICLADIDA, PALUDICOLA) by CARLA VREYS1,3,NICOLAAS K. MICHIELS2 and ERNEST SCHOCKAERT1 (1ResearchGroup Zoology, L.U.C., B-3590 Diepenbeek,Belgium, 2Max-Planck-Institut für Ver- haltensphysiologle,D-82319 Seewiesen,Germany) ABSTRACT The individual cocoon production of 50 specimens of the simultaneous hermaphroditic flatworm Dugesiagonocephala was followed in the laboratory for nine months. (I) Though cocoons were produced continuously, the number of fertilized cocoons decreased to zero in six months. (II) Twenty-one worms produced no cocoons, 16 produced only unfertilized cocoons and the remaining 13 produced at least one fertilized cocoon. (III) In the latter the proportion of fertilized cocoons relative to the total number produced, decreased with time. This was not compensated for by an increase in the number of hatched young. (IV) In sections of worms that produced either only fertilized cocoons, or only unfertilized cocoons or a combination of first fertilized, than unfertilized and finally no cocoons at all, sperm was only found in the seminal receptacles (near the ovaries) of a worm that produced only fertilized cocoons. All individuals had many sperm in the seminal vesicles of their male reproductive system. These results strongly suggest that self-fertilization does not occur in D. gonocephala. KEY WORDS:hermaphrodite, self-fertilization, Dugesiagonocephala, cocoon production, Platyhelminthes. INTRODUCTION Most turbellarians are simultaneous hermaphrodites and can-in prin- ciple-self fertilize. According to SEKERA (1906), self-fertilization is widespread among the Rhabdocoela. In 1909 WILHELMI observed cocoon production in one single isolated individual of Procerodes lobata (Schmidt, 1862). However, he did not report whether the cocoons were fertilized. In Cercyra hastata (Schmidt, 1861 ) young isolated on the day of hatching could produce viable cocoons (GREMINI & NIGRO, 1983). An electrophoretic study demonstrated that Mesostoma lingua (Abildgaard, 1789) does not engage in self-fertilization (HERBERT & PAYNE, 1985), but in Mesostoma ehrenbergii (Focke, 1836) resting eggs are produced by cross-fertilization, while subitaneous eggs are always pro- duced by selfing (HERBERT & BEATON, 1990). 56 On the other hand, based on experiments by VANDEL (1921) on Polycelis cornuta (Kenk, 1930), by YON GELEI (1924) on Dendrocoelum lacteum (Muller, 1774) and by GOETSCH (1925) on Dugesia lugubris (Schmidt, 1861), self-fertilization seems to be rare in freshwater tri- clads. According to ULLYOTT & BEAUCHAMP (1931) this is due to complex modifications of the sexual organs. In D. lugubris, e.g., muscles surrounding the ejaculatory duct should prevent the passage of sperm in periods of sexual quiescence. HYMAN ( 1951 ) stated that in planarians cross-fertilization is the rule and that sperm only leaves the seminal vesicles during copulation. Only in Cura foremanii (Girard, 1852) self fertilization has been demonstrated unequivocally: individuals isolated on the day of hatching produced numerous viable cocoons when reaching sexual maturity (ANDERSON, 1952a,b). Parthenogenesis was not involved (ANDERSON &JOHANN, 1958). Presently we investigate the reproductive strategies and the pro- cesses of sexual selection in the simultaneous hermaphroditic flatworm Dugesia gonocephala (Dugès, 1830). A crucial question is, whether this species can reproduce by selfing. In this report we present first evi- dence against the occurrence of self-fertilization. We looked for changes in the viability of cocoons produced by individuals that were sampled in a natural population and reared in isolation for more than nine months. If young are produced by selfing, we expected to see a rather constant production of fertilized cocoons. We related our obser- vations to the presence or absence of spermatozoa in the seminal receptacles and seminal vesicles in histological sections. METHODS On 28 October 1992, 94 specimens of D. gonocephalawere collected in the River Noorbeek in the north-eastern part of Belgium (50 °07' N, 5°09' E). Until July 31 th 1993, they were kept individually in small plastic vials (0.3 1), placed in two large containers (35 I). These were filled with continuously filtered and aerated tap water (without chlorine). In every vial two holes (diameter = 34 mm) covered by a 0.5 mm mesh net provided a constant water flow to each individual. The containers were placed in a semi-dark room at a natural dark/light cycle. Temperature ranged between 15° and 18° C. Worms were fed one punctured fresh Chironomuslarva two or three times a week. The following data were recorded: number of cocoons deposited per individual, number of unhatched cocoons and number of hatchlings per cocoon. Except for weekends, individual cocoon production was monitored daily. Undamaged cocoons were kept in isolation until hatching three to six weeks later. Cocoons that had not hatched after eight weeks were ruptured. When no young were found the cocoon was considered "unfertilized". In all analyses, only individuals that survived in the lab during the whole observation period (= 55.6%) are taken into account. For histological study specimens were fixed in Steinmann's fluid (1 part concentrated nitric acid, I part saturated solution of mercuric chloride in 5% sodium chloride, I part distilled water), stored in 70% ethanol and embedded in paraffin. Sagittal sections were .
Recommended publications
  • Synthesis of Phylogeny and Taxonomy Into a Comprehensive Tree of Life
    Synthesis of phylogeny and taxonomy into a comprehensive tree of life Cody E. Hinchliffa,1, Stephen A. Smitha,1,2, James F. Allmanb, J. Gordon Burleighc, Ruchi Chaudharyc, Lyndon M. Coghilld, Keith A. Crandalle, Jiabin Dengc, Bryan T. Drewf, Romina Gazisg, Karl Gudeh, David S. Hibbettg, Laura A. Katzi, H. Dail Laughinghouse IVi, Emily Jane McTavishj, Peter E. Midfordd, Christopher L. Owenc, Richard H. Reed, Jonathan A. Reesk, Douglas E. Soltisc,l, Tiffani Williamsm, and Karen A. Cranstonk,2 aEcology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48109; bInterrobang Corporation, Wake Forest, NC 27587; cDepartment of Biology, University of Florida, Gainesville, FL 32611; dField Museum of Natural History, Chicago, IL 60605; eComputational Biology Institute, George Washington University, Ashburn, VA 20147; fDepartment of Biology, University of Nebraska-Kearney, Kearney, NE 68849; gDepartment of Biology, Clark University, Worcester, MA 01610; hSchool of Journalism, Michigan State University, East Lansing, MI 48824; iBiological Science, Clark Science Center, Smith College, Northampton, MA 01063; jDepartment of Ecology and Evolutionary Biology, University of Kansas, Lawrence, KS 66045; kNational Evolutionary Synthesis Center, Duke University, Durham, NC 27705; lFlorida Museum of Natural History, University of Florida, Gainesville, FL 32611; and mComputer Science and Engineering, Texas A&M University, College Station, TX 77843 Edited by David M. Hillis, The University of Texas at Austin, Austin, TX, and approved July 28, 2015 (received for review December 3, 2014) Reconstructing the phylogenetic relationships that unite all line- published phylogenies are available only as journal figures, rather ages (the tree of life) is a grand challenge. The paucity of homologous than in electronic formats that can be integrated into databases and character data across disparately related lineages currently renders synthesis methods (7–9).
    [Show full text]
  • The Effect of Caffeine and Ethanol on Flatworm Regeneration
    East Tennessee State University Digital Commons @ East Tennessee State University Electronic Theses and Dissertations Student Works 8-2007 The ffecE t of Caffeine nda Ethanol on Flatworm Regeneration. Erica Leighanne Collins East Tennessee State University Follow this and additional works at: https://dc.etsu.edu/etd Part of the Chemical and Pharmacologic Phenomena Commons Recommended Citation Collins, Erica Leighanne, "The Effect of Caffeine nda Ethanol on Flatworm Regeneration." (2007). Electronic Theses and Dissertations. Paper 2028. https://dc.etsu.edu/etd/2028 This Thesis - Open Access is brought to you for free and open access by the Student Works at Digital Commons @ East Tennessee State University. It has been accepted for inclusion in Electronic Theses and Dissertations by an authorized administrator of Digital Commons @ East Tennessee State University. For more information, please contact [email protected]. The Effect of Caffeine and Ethanol on Flatworm Regeneration ____________________ A thesis presented to the faculty of the Department of Biological Sciences East Tennessee State University In partial fulfillment of the requirements for the degree Master of Science in Biology ____________________ by Erica Leighanne Collins August 2007 ____________________ Dr. J. Leonard Robertson, Chair Dr. Thomas F. Laughlin Dr. Kevin Breuel Keywords: Regeneration, Planarian, Dugesia tigrina, Flatworms, Caffeine, Ethanol ABSTRACT The Effect of Caffeine and Ethanol on Flatworm Regeneration by Erica Leighanne Collins Flatworms, or planarian, have a high potential for regeneration and have been used as a model to investigate regeneration and stem cell biology for over a century. Chemicals, temperature, and seasonal factors can influence planarian regeneration. Caffeine and ethanol are two widely used drugs and their effect on flatworm regeneration was evaluated in this experiment.
    [Show full text]
  • The Genome of Schmidtea Mediterranea and the Evolution Of
    OPEN ArtICLE doi:10.1038/nature25473 The genome of Schmidtea mediterranea and the evolution of core cellular mechanisms Markus Alexander Grohme1*, Siegfried Schloissnig2*, Andrei Rozanski1, Martin Pippel2, George Robert Young3, Sylke Winkler1, Holger Brandl1, Ian Henry1, Andreas Dahl4, Sean Powell2, Michael Hiller1,5, Eugene Myers1 & Jochen Christian Rink1 The planarian Schmidtea mediterranea is an important model for stem cell research and regeneration, but adequate genome resources for this species have been lacking. Here we report a highly contiguous genome assembly of S. mediterranea, using long-read sequencing and a de novo assembler (MARVEL) enhanced for low-complexity reads. The S. mediterranea genome is highly polymorphic and repetitive, and harbours a novel class of giant retroelements. Furthermore, the genome assembly lacks a number of highly conserved genes, including critical components of the mitotic spindle assembly checkpoint, but planarians maintain checkpoint function. Our genome assembly provides a key model system resource that will be useful for studying regeneration and the evolutionary plasticity of core cell biological mechanisms. Rapid regeneration from tiny pieces of tissue makes planarians a prime De novo long read assembly of the planarian genome model system for regeneration. Abundant adult pluripotent stem cells, In preparation for genome sequencing, we inbred the sexual strain termed neoblasts, power regeneration and the continuous turnover of S. mediterranea (Fig. 1a) for more than 17 successive sib- mating of all cell types1–3, and transplantation of a single neoblast can rescue generations in the hope of decreasing heterozygosity. We also developed a lethally irradiated animal4. Planarians therefore also constitute a a new DNA isolation protocol that meets the purity and high molecular prime model system for stem cell pluripotency and its evolutionary weight requirements of PacBio long-read sequencing12 (Extended Data underpinnings5.
    [Show full text]
  • Spermatogenesis and Spermatozoon Ultrastructure in Dugesia Sicula Lepori, 1948 (Platyhelminthes, Tricladida, Paludicola)
    Belg. J. Zool., 140 (Suppl.): 118-125 July 2010 Spermatogenesis and spermatozoon ultrastructure in Dugesia sicula Lepori, 1948 (Platyhelminthes, Tricladida, Paludicola) Mohamed Charni1, Aouatef Ben Ammar2, Mohamed Habib Jaafoura2, Fathia Zghal1 and Saïda Tekaya1 1Université de Tunis El-Manar, Faculté des Sciences, Campus Universitaire, 2092 El-Manar Tunis, Tunisie. 2 Service commun pour la recherche en microscopie électronique à transmission, Faculté de Médecine de Tunis, 15, Rue Djebel Lakhdar La Rabta, 1007, Tunis. Corresponding author: Mohammed Charni; e-mail: [email protected] ABSTRACT. We examine for the first time spermatogenesis, spermiogenesis and spermatozoon ultrastructure in Dugesia sicula Lepori, 1948 a sexual and diploid planarian living in Tunisian springs. This TEM-study shows that early spermatids joined by cytophores have rounded nuclei. During spermiogenesis, a row of microtubules appears in the differentiation zone beneath the plasma membrane and close to the intercentriolar body, which consists of several dense bands connected by filaments. Two free flagella (9+1 configuration) grow out- side the spermatid. An apical layer of dense nucleoplasm develops and the flagellum appear, facing in opposite directions before rotating to lie parallel to each other after the intercentriolar body splits into two halves. Mitochondria are closely packed around the spermatocyte nucleus before fusing during spermiogenesis, to form a long mitochondrion, which lies parallel to the elongated nucleus along the ripe spermatozoon. The latter is thread-shaped and consists of two regions: the proximal process and a distal part. The former contains the nucleus and a part of the mitochondrion. The latter contains the rest of the mitochondrion and a tapering tail of the nucleus.
    [Show full text]
  • R E S E a R C H / M a N a G E M E N T Aquatic and Terrestrial Flatworm (Platyhelminthes, Turbellaria) and Ribbon Worm (Nemertea)
    RESEARCH/MANAGEMENT FINDINGSFINDINGS “Put a piece of raw meat into a small stream or spring and after a few hours you may find it covered with hundreds of black worms... When not attracted into the open by food, they live inconspicuously under stones and on vegetation.” – BUCHSBAUM, et al. 1987 Aquatic and Terrestrial Flatworm (Platyhelminthes, Turbellaria) and Ribbon Worm (Nemertea) Records from Wisconsin Dreux J. Watermolen D WATERMOLEN Bureau of Integrated Science Services INTRODUCTION The phylum Platyhelminthes encompasses three distinct Nemerteans resemble turbellarians and possess many groups of flatworms: the entirely parasitic tapeworms flatworm features1. About 900 (mostly marine) species (Cestoidea) and flukes (Trematoda) and the free-living and comprise this phylum, which is represented in North commensal turbellarians (Turbellaria). Aquatic turbellari- American freshwaters by three species of benthic, preda- ans occur commonly in freshwater habitats, often in tory worms measuring 10-40 mm in length (Kolasa 2001). exceedingly large numbers and rather high densities. Their These ribbon worms occur in both lakes and streams. ecology and systematics, however, have been less studied Although flatworms show up commonly in invertebrate than those of many other common aquatic invertebrates samples, few biologists have studied the Wisconsin fauna. (Kolasa 2001). Terrestrial turbellarians inhabit soil and Published records for turbellarians and ribbon worms in leaf litter and can be found resting under stones, logs, and the state remain limited, with most being recorded under refuse. Like their freshwater relatives, terrestrial species generic rubric such as “flatworms,” “planarians,” or “other suffer from a lack of scientific attention. worms.” Surprisingly few Wisconsin specimens can be Most texts divide turbellarians into microturbellarians found in museum collections and a specialist has yet to (those generally < 1 mm in length) and macroturbellari- examine those that are available.
    [Show full text]
  • Planarians, a Neglected Component of Biodiversity in Groundwaters
    diversity Article Planarians, a Neglected Component of Biodiversity in Groundwaters Benedetta Barzaghi 1,2,* , Davide De Giorgi 1, Roberta Pennati 1 and Raoul Manenti 1,2 1 Department of Environmental Science and Policy, Università degli Studi di Milano, via Celoria 26, 20133 Milano, Italy; [email protected] (D.D.G.); [email protected] (R.P.); [email protected] (R.M.) 2 Laboratorio di Biologia Sotterranea “Enrico Pezzoli”, Parco Regionale del Monte Barro, Località Eremo, 23851 Galbiate, Italy * Correspondence: [email protected] Abstract: Underground waters are still one of the most important sources of drinking water for the planet. Moreover, the fauna that inhabits these waters is still little known, even if it could be used as an effective bioindicator. Among cave invertebrates, planarians are strongly suited to be used as a study model to understand adaptations and trophic web features. Here, we show a systematic literature review that aims to investigate the studies done so far on groundwater-dwelling planarians. The research was done using Google Scholar and Web of Science databases. Using the key words “Planarian cave” and “Flatworm Cave” we found 2273 papers that our selection reduced to only 48, providing 113 usable observations on 107 different species of planarians from both groundwaters and springs. Among the most interesting results, it emerged that planarians are at the top of the food chain in two thirds of the reported caves, and in both groundwaters and springs they show a high variability of morphological adaptations to subterranean environments. This is a first attempt to review the phylogeny of the groundwater-dwelling planarias, focusing on the online literature.
    [Show full text]
  • Dugesia Japonica Is the Best Suited of Three Planarian Species for High-Throughput
    bioRxiv preprint doi: https://doi.org/10.1101/2020.01.23.917047; this version posted January 24, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. 1 Dugesia japonica is the best suited of three planarian species for high-throughput 2 toxicology screening 3 Danielle Irelanda, Veronica Bocheneka, Daniel Chaikenb, Christina Rabelera, Sumi Onoeb, Ameet 4 Sonib, and Eva-Maria S. Collinsa,c* 5 6 a Department of Biology, Swarthmore College, Swarthmore, Pennsylvania, United States of 7 America 8 b Department of Computer Science, Swarthmore College, Swarthmore, Pennsylvania, United 9 States of America 10 c Department of Physics, University of California San Diego, La Jolla, California, United States of 11 America 12 13 14 15 16 * Corresponding author 17 Email: [email protected] (E-MSC) 18 Address: Martin Hall 202, 500 College Avenue, Swarthmore College, Swarthmore, PA 19081 19 Phone number: 610-690-5380 20 21 22 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.01.23.917047; this version posted January 24, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. 23 Abstract 24 High-throughput screening (HTS) using new approach methods is revolutionizing 25 toxicology. Asexual freshwater planarians are a promising invertebrate model for neurotoxicity 26 HTS because their diverse behaviors can be used as quantitative readouts of neuronal function.
    [Show full text]
  • The Effects of Fluoride Ions on Neuromuscular Activity and Regeneration in Dugesia Tigrina," Georgia Journal of Science, Vol
    Georgia Journal of Science Volume 75 No. 2 Scholarly Contributions from the Article 5 Membership and Others 2017 The ffecE ts of Fluoride Ions on Neuromuscular Activity and Regeneration in Dugesia tigrina John Williams Jr. Albany State University, [email protected] Follow this and additional works at: http://digitalcommons.gaacademy.org/gjs Part of the Cellular and Molecular Physiology Commons, Environmental Health Commons, and the Zoology Commons Recommended Citation Williams, John Jr. (2017) "The Effects of Fluoride Ions on Neuromuscular Activity and Regeneration in Dugesia tigrina," Georgia Journal of Science, Vol. 75, No. 2, Article 5. Available at: http://digitalcommons.gaacademy.org/gjs/vol75/iss2/5 This Research Articles is brought to you for free and open access by Digital Commons @ the Georgia Academy of Science. It has been accepted for inclusion in Georgia Journal of Science by an authorized editor of Digital Commons @ the Georgia Academy of Science. The ffecE ts of Fluoride Ions on Neuromuscular Activity and Regeneration in Dugesia tigrina Cover Page Footnote The iW lliams Laboratory would like to thank the Albany State University Department of Natural and Forensic Sciences for providing resources and laboratory space to conduct this research. The al boratory would also like to thank the Florida Georgia Alliance for Minority Participation for support and funding. Dr. Williams would also like to thank Qurat Ain and Kimberly Gaines for technical support in conducting these experiments. This research articles is available in Georgia Journal of Science: http://digitalcommons.gaacademy.org/gjs/vol75/iss2/5 Williams: Negative Effects of Fluoride on Planaria Nervous/Muscular Systems THE EFFECTS OF FLUORIDE IONS ON NEUROMUSCULAR ACTIVITY AND REGENERATION IN Dugesia tigrina John Williams, Ph.D.
    [Show full text]
  • The Taxonomic Status of Dugesia Biblica from Israel and Turkey
    A peer-reviewed open-access journal ZooKeys 506: 1–12 (2015)The taxonomic status of Dugesia biblica from Israel and Turkey... 1 doi: 10.3897/zookeys.506.9663 RESEARCH ARTICLE http://zookeys.pensoft.net Launched to accelerate biodiversity research The taxonomic status of Dugesia biblica from Israel and Turkey (Platyhelminthes, Tricladida, Dugesiidae) Eduard Solà1, Ronald Sluys2, Ori Segev3, Leon Blaustein3, Marta Riutort1 1 Departament de Genètica, Facultat de Biologia and Institut de Recerca de la Biodiversitat (IRBio), Universi- tat de Barcelona, Av. Diagonal 643, 08028, Barcelona, Spain 2 Naturalis Biodiversity Center, P.O. Box 9517, 2300 RA Leiden, The Netherlands3 Department of Evolutionary & Environmental Biology and Institute of Evolution, Faculty of Sciences, University of Haifa, 3498838, Haifa, Israel Corresponding author: Eduard Solà ([email protected]) Academic editor: F. Govedich | Received 23 March 2015 | Accepted 28 April 2015 | Published 28 May 2015 http://zoobank.org/AE94B343-614E-45E5-857E-DEB86A90DF98 Citation: Solà E, Sluys R, Segev O, Blaustein L, Riutort M (2015) The taxonomic status ofDugesia biblica from Israel and Turkey (Platyhelminthes, Tricladida, Dugesiidae). ZooKeys 506: 1–12. doi: 10.3897/zookeys.506.9663 Abstract The taxonomic status of Dugesia biblica (Platyhelminthes, Tricladida, Dugesiidae) from Israel and Turkey is problematic due to its morphological similarity with D. sicula since these nominal species present over- lapping characters. In this study we analyzed histological preparations of specimens of these two nominal species and also compared mitochondrial COI gene sequences from Israeli populations to the already known haplotype composition of D. sicula. We concluded that these animals belong to the same species and therefore we consider D.
    [Show full text]
  • Behavioral Parameters of Planarians (Girardia Tigrina) As Fast Screening, Integrative and Cumulative Biomarkers of Environmental Contamination: Preliminary Results
    water Article Behavioral Parameters of Planarians (Girardia tigrina) as Fast Screening, Integrative and Cumulative Biomarkers of Environmental Contamination: Preliminary Results Ana M. Córdova López 1,2 , Althiéris de Souza Saraiva 3, Carlos Gravato 4,* , Amadeu M. V. M. Soares 1,5 and Renato Almeida Sarmento 1 1 Programa de Pós-Graduação em Produção Vegetal, Campus Universitário de Gurupi, Universidade Federal do Tocantins, Gurupi-Tocantins 77402-970, Brazil; [email protected] 2 Estación Experimental Agraria Vista Florida, Dirección de Desarrollo Tecnológico Agrario, Instituto Nacional de Innovación Agraria (INIA), Carretera Chiclayo-Ferreñafe Km. 8, Chiclayo, Lambayeque 14300, Peru; [email protected] 3 Laboratório de Agroecossistemas e Ecotoxicologia, Instituto Federal de Educação, Ciência e Tecnologia Goiano-Campus Campos Belos, Campos Belos-Goiás 73840-000, Brazil; [email protected] 4 Faculdade de Ciências & CESAM, Universidade de Lisboa, 1749-016 Lisboa, Portugal 5 Departamento de Biologia & CESAM, Campus Universitário de Santiago, Universidade de Aveiro, 3810-193 Aveiro, Portugal; [email protected] * Correspondence: [email protected] Citation: López, A.M.C.; Saraiva, Abstract: The present study aims to use behavioral responses of the freshwater planarian Girardia A.d.S.; Gravato, C.; Soares, A.M.V.M.; tigrina to assess the impact of anthropogenic activities on the aquatic ecosystem of the watershed Sarmento, R.A. Behavioral Araguaia-Tocantins (Tocantins, Brazil). Behavioral responses are integrative and cumulative tools that Parameters of Planarians (Girardia reflect changes in energy allocation in organisms. Thus, feeding rate and locomotion velocity (pLMV) tigrina) as Fast Screening, Integrative were determined to assess the effects induced by the laboratory exposure of adult planarians to water and Cumulative Biomarkers of samples collected in the region of Tocantins-Araguaia, identifying the sampling points affected by Environmental Contamination: contaminants.
    [Show full text]
  • Efficient Depletion of Ribosomal RNA for RNA Sequencing in Planarians Iana V
    Kim et al. BMC Genomics (2019) 20:909 https://doi.org/10.1186/s12864-019-6292-y METHODOLOGY ARTICLE Open Access Efficient depletion of ribosomal RNA for RNA sequencing in planarians Iana V. Kim1*, Eric J. Ross2,3, Sascha Dietrich4, Kristina Döring4, Alejandro Sánchez Alvarado2,3 and Claus-D. Kuhn1* Abstract Background: The astounding regenerative abilities of planarian flatworms prompt steadily growing interest in examining their molecular foundation. Planarian regeneration was found to require hundreds of genes and is hence a complex process. Thus, RNA interference followed by transcriptome-wide gene expression analysis by RNA-seq is a popular technique to study the impact of any particular planarian gene on regeneration. Typically, the removal of ribosomal RNA (rRNA) is the first step of all RNA-seq library preparation protocols. To date, rRNA removal in planarians was primarily achieved by the enrichment of polyadenylated (poly(A)) transcripts. However, to better reflect transcriptome dynamics and to cover also non-poly(A) transcripts, a procedure for the targeted removal of rRNA in planarians is needed. Results: In this study, we describe a workflow for the efficient depletion of rRNA in the planarian model species S. mediterranea. Our protocol is based on subtractive hybridization using organism-specific probes. Importantly, the designed probes also deplete rRNA of other freshwater triclad families, a fact that considerably broadens the applicability of our protocol. We tested our approach on total RNA isolated from stem cells (termed neoblasts) of S. mediterranea and compared ribodepleted libraries with publicly available poly(A)-enriched ones. Overall, mRNA levels after ribodepletion were consistent with poly(A) libraries.
    [Show full text]
  • Max-Planck-Institut F¸R Biophysikalische Chemie Gˆttingen
    Max-Planck-Institut für biophysikalische Chemie Dr. Carmen Rotte Leiterin Presse- und Öffentlichkeitsarbeit Am Faßberg 11, 37077 Göttingen Tel.: +49 551 201-1304 E-Mail: [email protected] Pressemitteilung 12. April 2019 Jochen Rink ist neuer Direktor am Max-Planck-Institut für biophysikalische Chemie Der Entwicklungsbiologe hat das Amt zum 1. April 2019 angetreten. Rink erforscht, wie Plattwürmer es schaffen, ihr Gewebe nach Verletzungen vollständig zu regenerieren, und warum diese Fähigkeit im Tierreich eher eine Ausnahme ist als die Regel. Rink wechselt mit seiner Forschungsgruppe vom Max-Planck- Institut (MPI) für Zellbiologie und Genetik in Dresden an das Göttinger Institut, wo er zukünftig eine eigene Abteilung leiten wird. „Jochen Rink ist ein Paradebeispiel für einen höchst interdisziplinär arbeitenden Wissenschaftler. In seinen Fragestellungen vereint er Zell- und Entwicklungsbiologie, Evolutionsforschung und Bioinformatik. Damit passt er hervorragend zu unserem naturwissenschaftlich sehr breit aufgestellten Institut“, freut sich der Geschäftsführende Direktor des Max- Planck-Institut (MPI) für biophysikalische Dr. Jochen Rink (Foto: Max-Planck-Institut für Chemie, Dirk Görlich, über die Molekulare Zellbiologie und Genetik) Neuberufung. Für die meisten Tiere wie auch für uns Menschen ist es ein schwerer Schlag, einen Körperteil wie beispielsweise einen Fuß oder auch „nur“ eine Zehe zu verlieren. Denn einmal verloren, wächst der betreffende Körperteil nie mehr nach. Der Plattwurm Schmidtea mediterranea kennt dieses Problem nicht. Er ist ein Meister der Regeneration und kann nicht nur einzelne Teile seines wenige Zentimeter langen Körpers erneuern, sondern sogar den kompletten Organismus: In nur wenigen Tagen entwickelt sich aus einem Gewebestück von wenigen Tausend Zellen ein vollständiges Tier Cura pinguis, ein Plattwurm aus Australien.
    [Show full text]