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Pests, Diseases, and Aridity Have Shaped the Genome of Corymbia Citriodora
Lawrence Berkeley National Laboratory Recent Work Title Pests, diseases, and aridity have shaped the genome of Corymbia citriodora. Permalink https://escholarship.org/uc/item/5t51515k Journal Communications biology, 4(1) ISSN 2399-3642 Authors Healey, Adam L Shepherd, Mervyn King, Graham J et al. Publication Date 2021-05-10 DOI 10.1038/s42003-021-02009-0 Peer reviewed eScholarship.org Powered by the California Digital Library University of California ARTICLE https://doi.org/10.1038/s42003-021-02009-0 OPEN Pests, diseases, and aridity have shaped the genome of Corymbia citriodora ✉ Adam L. Healey 1,2 , Mervyn Shepherd 3, Graham J. King 3, Jakob B. Butler 4, Jules S. Freeman 4,5,6, David J. Lee 7, Brad M. Potts4,5, Orzenil B. Silva-Junior8, Abdul Baten 3,9, Jerry Jenkins 1, Shengqiang Shu 10, John T. Lovell 1, Avinash Sreedasyam1, Jane Grimwood 1, Agnelo Furtado2, Dario Grattapaglia8,11, Kerrie W. Barry10, Hope Hundley10, Blake A. Simmons 2,12, Jeremy Schmutz 1,10, René E. Vaillancourt4,5 & Robert J. Henry 2 Corymbia citriodora is a member of the predominantly Southern Hemisphere Myrtaceae family, which includes the eucalypts (Eucalyptus, Corymbia and Angophora; ~800 species). 1234567890():,; Corymbia is grown for timber, pulp and paper, and essential oils in Australia, South Africa, Asia, and Brazil, maintaining a high-growth rate under marginal conditions due to drought, poor-quality soil, and biotic stresses. To dissect the genetic basis of these desirable traits, we sequenced and assembled the 408 Mb genome of Corymbia citriodora, anchored into eleven chromosomes. Comparative analysis with Eucalyptus grandis reveals high synteny, although the two diverged approximately 60 million years ago and have different genome sizes (408 vs 641 Mb), with few large intra-chromosomal rearrangements. -
Street Tree Master Plan Report © Sunshine Coast Regional Council 2009-Current
Sunshine Coast Street Tree Master Plan 2018 Part A: Street Tree Master Plan Report © Sunshine Coast Regional Council 2009-current. Sunshine Coast Council™ is a registered trademark of Sunshine Coast Regional Council. www.sunshinecoast.qld.gov.au [email protected] T 07 5475 7272 F 07 5475 7277 Locked Bag 72 Sunshine Coast Mail Centre Qld 4560 Acknowledgements Council wishes to thank all contributors and stakeholders involved in the development of this document. Disclaimer Information contained in this document is based on available information at the time of writing. All figures and diagrams are indicative only and should be referred to as such. While the Sunshine Coast Regional Council has exercised reasonable care in preparing this document it does not warrant or represent that it is accurate or complete. Council or its officers accept no responsibility for any loss occasioned to any person acting or refraining from acting in reliance upon any material contained in this document. Foreword Here on our healthy, smart, creative Sunshine Coast we are blessed with a wonderful environment. It is central to our way of life and a major reason why our 320,000 residents choose to live here – and why we are joined by millions of visitors each year. Although our region is experiencing significant population growth, we are dedicated to not only keeping but enhancing the outstanding characteristics that make this such a special place in the world. Our trees are the lungs of the Sunshine Coast and I am delighted that council has endorsed this master plan to increase the number of street trees across our region to balance our built environment. -
Jervis Bay Territory Page 1 of 50 21-Jan-11 Species List for NRM Region (Blank), Jervis Bay Territory
Biodiversity Summary for NRM Regions Species List What is the summary for and where does it come from? This list has been produced by the Department of Sustainability, Environment, Water, Population and Communities (SEWPC) for the Natural Resource Management Spatial Information System. The list was produced using the AustralianAustralian Natural Natural Heritage Heritage Assessment Assessment Tool Tool (ANHAT), which analyses data from a range of plant and animal surveys and collections from across Australia to automatically generate a report for each NRM region. Data sources (Appendix 2) include national and state herbaria, museums, state governments, CSIRO, Birds Australia and a range of surveys conducted by or for DEWHA. For each family of plant and animal covered by ANHAT (Appendix 1), this document gives the number of species in the country and how many of them are found in the region. It also identifies species listed as Vulnerable, Critically Endangered, Endangered or Conservation Dependent under the EPBC Act. A biodiversity summary for this region is also available. For more information please see: www.environment.gov.au/heritage/anhat/index.html Limitations • ANHAT currently contains information on the distribution of over 30,000 Australian taxa. This includes all mammals, birds, reptiles, frogs and fish, 137 families of vascular plants (over 15,000 species) and a range of invertebrate groups. Groups notnot yet yet covered covered in inANHAT ANHAT are notnot included included in in the the list. list. • The data used come from authoritative sources, but they are not perfect. All species names have been confirmed as valid species names, but it is not possible to confirm all species locations. -
University of California Santa Cruz Responding to An
UNIVERSITY OF CALIFORNIA SANTA CRUZ RESPONDING TO AN EMERGENT PLANT PEST-PATHOGEN COMPLEX ACROSS SOCIAL-ECOLOGICAL SCALES A dissertation submitted in partial satisfaction of the requirements for the degree of DOCTOR OF PHILOSOPHY in ENVIRONMENTAL STUDIES with an emphasis in ECOLOGY AND EVOLUTIONARY BIOLOGY by Shannon Colleen Lynch December 2020 The Dissertation of Shannon Colleen Lynch is approved: Professor Gregory S. Gilbert, chair Professor Stacy M. Philpott Professor Andrew Szasz Professor Ingrid M. Parker Quentin Williams Acting Vice Provost and Dean of Graduate Studies Copyright © by Shannon Colleen Lynch 2020 TABLE OF CONTENTS List of Tables iv List of Figures vii Abstract x Dedication xiii Acknowledgements xiv Chapter 1 – Introduction 1 References 10 Chapter 2 – Host Evolutionary Relationships Explain 12 Tree Mortality Caused by a Generalist Pest– Pathogen Complex References 38 Chapter 3 – Microbiome Variation Across a 66 Phylogeographic Range of Tree Hosts Affected by an Emergent Pest–Pathogen Complex References 110 Chapter 4 – On Collaborative Governance: Building Consensus on 180 Priorities to Manage Invasive Species Through Collective Action References 243 iii LIST OF TABLES Chapter 2 Table I Insect vectors and corresponding fungal pathogens causing 47 Fusarium dieback on tree hosts in California, Israel, and South Africa. Table II Phylogenetic signal for each host type measured by D statistic. 48 Table SI Native range and infested distribution of tree and shrub FD- 49 ISHB host species. Chapter 3 Table I Study site attributes. 124 Table II Mean and median richness of microbiota in wood samples 128 collected from FD-ISHB host trees. Table III Fungal endophyte-Fusarium in vitro interaction outcomes. -
Evolution and Diversification of the Plant Gibberellin Receptor GID1
Evolution and diversification of the plant gibberellin receptor GID1 Hideki Yoshidaa,b, Eiichi Tanimotoc, Takaaki Hiraia, Yohei Miyanoirid,e, Rie Mitania, Mayuko Kawamuraa, Mitsuhiro Takedad,f, Sayaka Takeharaa, Ko Hiranoa, Masatsune Kainoshod,g, Takashi Akagih, Makoto Matsuokaa,1, and Miyako Ueguchi-Tanakaa,1 aBioscience and Biotechnology Center, Nagoya University, Nagoya, 464-8601 Aichi, Japan; bKihara Institute for Biological Research, Yokohama City University, Yokohama, 244-0813 Kanagawa, Japan; cGraduate School of Natural Sciences, Nagoya City University, Nagoya, 467-8501 Aichi, Japan; dStructural Biology Research Center, Graduate School of Science, Nagoya University, Nagoya, 464-8601 Aichi, Japan; eResearch Center for State-of-the-Art Functional Protein Analysis, Institute for Protein Research, Osaka University, Suita, 565-0871 Osaka, Japan; fDepartment of Structural BioImaging, Faculty of Life Sciences, Kumamoto University, 862-0973 Kumamoto, Japan; gGraduate School of Science and Engineering, Tokyo Metropolitan University, Hachioji, 192-0397 Tokyo, Japan; and hGraduate School of Agriculture, Kyoto University, 606-8502 Kyoto, Japan Edited by Mark Estelle, University of California, San Diego, La Jolla, CA, and approved July 10, 2018 (received for review April 9, 2018) The plant gibberellin (GA) receptor GID1 shows sequence similarity erwort Marchantia polymorpha (5–7). Furthermore, Hirano et al. to carboxylesterase (CXE). Here, we report the molecular evolution (5) reported that GID1s in the lycophyte Selaginella moellen- of GID1 from establishment to functionally diverse forms in dorffii (SmGID1s) have unique properties in comparison with eudicots. By introducing 18 mutagenized rice GID1s into a rice angiosperm GID1s: namely, lower affinity to bioactive GAs and gid1 null mutant, we identified the amino acids crucial for higher affinity to inactive GAs (lower specificity). -
Regional Ecosystem Technical Descriptions
Department of Science, Information Technology, Innovation and the Arts Regional Ecosystem Technical Descriptions Technical descriptions provide a detailed description of the full range in structure and floristic composition of regional ecosystems (e.g. 12.3.5) and their component vegetation communities (e.g. 12.3.5a). The descriptions are compiled using site survey data from the Queensland Herbarium’s CORVEG database. Distribution maps, representative images (if available) and the pre-clearing and remnant area (hectares) of each vegetation community derived from the regional ecosystem mapping (spatial) data are included. The technical descriptions should be used in conjunction with the fields from the regional ecosystem description database (REDD) for a full description of the regional ecosystem. Quantitative site data from relatively undisturbed sites are extracted from CORVEG and summarized to provide information specific to each vegetation community. Technical descriptions include the attributes: tree canopy height and cover and native plant species composition of the predominant layer, which are used to assess the remnant status of vegetation under the Vegetation Management Act 1999. However, as technical descriptions reflect the full range in structure and floristic composition across the climatic, natural disturbance and geographic range of the regional ecosystem, local reference sites should be used where possible (Neldner et al. 2005 section 3.3.3). The technical descriptions are subject to review and are updated as additional -
New Taxa Described by Günther Theischinger (Update 2016)
New taxa described by Günther Theischinger (update 2016) Taxa, mostly of genus and species group, described as new: up to end of 2016: 41+, 729+ ODONATA, Aeshnidae Afroaeschna Peters & Theischinger, Odonatologica 40(3): 229 (2011). Agyrtacantha browni Marinov & Theischinger, International Dragonfly Fund - Report 53:2 (2012). Agyrtacantha picta Theischinger & Richards, Odonatologica xxx (2017). Gynacantha heros Theischinger & Richards, Odonatologica 41 (4): 356 (2012). Gynacantha nourlangie Theischinger & Watson, in Watson et al., The Australian Dragonflies: 41 (1991). Gynacantha nuda Theischinger & Richards, Odonatologica 45 (3/4): 318 (2016). Pinheyschna Peters & Theischinger, Odonatologica 40(3): 232 (2011). Pinheyschna waterstoni Peters & Theischinger, Odonatologica 40(3): 235 (2011). Zosteraeschna Peters & Theischinger, Odonatologica 40(3): 241 (2011). ODONATA, Argiolestidae Argiolestes angulatus Theischinger & Richards, in Tyagi, B.K. (ed.): Odonata Biology of Dragonflies: 34 (2007). Argiolestes fornicatus Theischinger & Richards, in Tyagi, B.K. (ed.): Odonata Biology of Dragonflies: 36 (2007). Argiolestes indentatus Theischinger & Richards, Odonatologica 35(1): 386 (2006). Argiolestes trigonalis Theischinger & Richards, Odonatologica 37(2): 168 (2008). Austroargiolestes brookhousei Theischinger & O'Farrell, Odonatologica 15 (4): 409 (1986). Austroargiolestes christine Theischinger & O'Farrell, Odonatologica 15 (4): 394 (1986). Austroargiolestes elke Theischinger & O'Farrell, Odonatologica 15 (4): 396 (1986). Austroargiolestes isabellae -
Characterising Wood Properties for Deployment of Elite Subtropical And
Characterising wood properties for deployment of elite subtropical and tropical hardwoods Final Report Stephen J. Trueman‡*, Geoff R. Dickinson‡*, John R. Huth*, Anton Zbonak*, Jeremy T. Brawner†, Kevin J. Harding*, David J. Lee‡*, Paul Warburton†, Tracey V. McMahon‡, Amanda J. Kilkenny‡, Laura Simmons‡ and Helen M. Wallace‡ ‡Faculty of Science, Health, Education & Engineering, University of Sunshine Coast *Horticulture and Forestry Science Agri-Science Queensland Department Employment, Economic Development and Innovation †CSIRO Plant Industry March 2012 Introduction and Summary Queensland has over 42,000 hectares of hardwood plantations, with 13,700 hectares currently managed for sawn timber and high-value products. Previously, a major impediment to expansion of the hardwood sawn timber and high-value products industry in Queensland was that improved varieties of the key subtropical and tropical species were not available for plantation establishment. Trees from earlier projects, such as Hardwoods Queensland and the Private Plantations Initiative, have now reached an age where selection for growth, form and wood properties is possible. The current project used non-destructive and destructive wood evaluation techniques to characterise the timber quality of 443 subtropical and tropical Corymbia and Eucalyptus trees in these plantings, allowing selection of trees with the best growth, form and wood properties under Queensland conditions. Ecological assessments were also undertaken in the Corymbia plantings to identify germplasm that posed minimal risk of gene flow into native forests. Elite varieties are being fast tracked for deployment in Queensland using economical systems for germplasm capture and nursery production. The project identified and captured 108 new Corymbia and Eucalyptus varieties that can be grown with confidence in Queensland over a shorter rotation length and which produce well- characterised high-quality hardwood timber. -
Recommendation of Native Species for the Reforestation of Degraded Land Using Live Staking in Antioquia and Caldas’ Departments (Colombia)
UNIVERSITÀ DEGLI STUDI DI PADOVA Department of Land, Environment Agriculture and Forestry Second Cycle Degree (MSc) in Forest Science Recommendation of native species for the reforestation of degraded land using live staking in Antioquia and Caldas’ Departments (Colombia) Supervisor Prof. Lorenzo Marini Co-supervisor Prof. Jaime Polanía Vorenberg Submitted by Alicia Pardo Moy Student N. 1218558 2019/2020 Summary Although Colombia is one of the countries with the greatest biodiversity in the world, it has many degraded areas due to agricultural and mining practices that have been carried out in recent decades. The high Andean forests are especially vulnerable to this type of soil erosion. The corporate purpose of ‘Reforestadora El Guásimo S.A.S.’ is to use wood from its plantations, but it also follows the parameters of the Forest Stewardship Council (FSC). For this reason, it carries out reforestation activities and programs and, very particularly, it is interested in carrying out ecological restoration processes in some critical sites. The study area is located between 2000 and 2750 masl and is considered a low Andean humid forest (bmh-MB). The average annual precipitation rate is 2057 mm and the average temperature is around 11 ºC. The soil has a sandy loam texture with low pH, which limits the amount of nutrients it can absorb. FAO (2014) suggests that around 10 genera are enough for a proper restoration. After a bibliographic revision, the genera chosen were Alchornea, Billia, Ficus, Inga, Meriania, Miconia, Ocotea, Protium, Prunus, Psidium, Symplocos, Tibouchina, and Weinmannia. Two inventories from 2013 and 2019, helped to determine different biodiversity indexes to check the survival of different species and to suggest the adequate characteristics of the individuals for a successful vegetative stakes reforestation. -
Impacts of Land Clearing
Impacts of Land Clearing on Australian Wildlife in Queensland January 2003 WWF Australia Report Authors: Dr Hal Cogger, Professor Hugh Ford, Dr Christopher Johnson, James Holman & Don Butler. Impacts of Land Clearing on Australian Wildlife in Queensland ABOUT THE AUTHORS Dr Hal Cogger Australasian region” by the Royal Australasian Ornithologists Union. He is a WWF Australia Trustee Dr Hal Cogger is a leading Australian herpetologist and former member of WWF’s Scientific Advisory and author of the definitive Reptiles and Amphibians Panel. of Australia. He is a former Deputy Director of the Australian Museum. He has participated on a range of policy and scientific committees, including the Dr Christopher Johnson Commonwealth Biological Diversity Advisory Committee, Chair of the Australian Biological Dr Chris Johnson is an authority on the ecology and Resources Study, and Chair of the Australasian conservation of Australian marsupials. He has done Reptile & Amphibian Specialist Group (IUCN’s extensive research on herbivorous marsupials of Species Survival Commission). He also held a forests and woodlands, including landmark studies of Conjoint Professorship in the Faculty of Science & the behavioural ecology of kangaroos and wombats, Mathematics at the University of Newcastle (1997- the ecology of rat-kangaroos, and the sociobiology of 2001). He is a member of the International possums. He has also worked on large-scale patterns Commission on Zoological Nomenclature and is a in the distribution and abundance of marsupial past Secretary of the Division of Zoology of the species and the biology of extinction. He is a member International Union of Biological Sciences. He is of the Marsupial and Monotreme Specialist Group of currently the John Evans Memorial Fellow at the the IUCN Species Survival Commission, and has Australian Museum. -
Critical Revision of the Genus Eucalyptus Volume 8: Parts 71-80
Critical revision of the genus eucalyptus Volume 8: Parts 71-80 Maiden, J. H. (Joseph Henry) (1859-1925) University of Sydney Library Sydney 2002 http://setis.library.usyd.edu.au/oztexts © University of Sydney Library. The texts and images are not to be used for commercial purposes without permission Source Text: Prepared from the print edition of Parts 71-80 Critical revision of the genus eucalyptus, published by William Applegate Gullick Sydney 1933. 354pp. All quotation marks are retained as data. First Published: 1933 583.42 Australian Etext Collections at botany prose nonfiction 1910-1939 Critical revision of the genus eucalyptus volume 8 (Government Botanist of New South Wales and Director of the Botanic Gardens, Sydney) “Ages are spent in collecting materials, ages more in separating and combining them. Even when a system has been formed, there is still something to add, to alter, or to reject. Every generation enjoys the use of a vast hoard bequeathed to it by antiquity, and transmits that hoard, augmented by fresh acquisitions, to future ages. In these pursuits, therefore, the first speculators lie under great disadvantages, and, even when they fail, are entitled to praise.” Macaulay's “Essay on Milton” Sydney William Applegate Gullick, Government Printer 1933 Part 71 CCCLXXXIII. E. Bucknelli Cambage In Proc. Linn. Soc., N.S.W., li (1926), 325, with Plate 22. FOLIA MATURA lanceolata, longa circa 6–15 cm., lata 1–3 cm., cum punctus rectis aut uncis, viridia prope cinerea, interdum glauca in utramque partem, glabra, costa media distincta, venae laterales aliquanto prominentes, dispositae ex costa media cum angulo circa 45–55 graduum, cum venularum tenuiorum reticulo interveniente, vena intra marginem aliquanto procul margine, glandulae olei parvae sed multae, petiolus longus 2 mm. -
Wild Crop Relatives: Genomic and Breeding Resources: Forest Trees
Wild Crop Relatives: Genomic and Breeding Resources . Chittaranjan Kole Editor Wild Crop Relatives: Genomic and Breeding Resources Forest Trees Editor Prof. Chittaranjan Kole Director of Research Institute of Nutraceutical Research Clemson University 109 Jordan Hall Clemson, SC 29634 [email protected] ISBN 978-3-642-21249-9 e-ISBN 978-3-642-21250-5 DOI 10.1007/978-3-642-21250-5 Springer Heidelberg Dordrecht London New York Library of Congress Control Number: 2011922649 # Springer-Verlag Berlin Heidelberg 2011 This work is subject to copyright. All rights are reserved, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilm or in any other way, and storage in data banks. Duplication of this publication or parts thereof is permitted only under the provisions of the German Copyright Law of September 9, 1965, in its current version, and permission for use must always be obtained from Springer. Violations are liable to prosecution under the German Copyright Law. The use of general descriptive names, registered names, trademarks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use. Cover design: deblik, Berlin Printed on acid-free paper Springer is part of Springer Science+Business Media (www.springer.com) Dedication Dr. Norman Ernest Borlaug,1 the Father of Green Revolution, is well respected for his contribu- tions to science and society. There was or is not and never will be a single person on this Earth whose single-handed service to science could save millions of people from death due to starvation over a period of over four decades like Dr.