Table S1. Analysis of 4132 initial transcribed regions (see Cho et al., 2009) for putative σ70-dependent pause-inducing sequence elements.

Summary of results nAnnnT and at least a 3/6 match to TATAAT in registers 1-9: 1654/4132 nAnnnT and at least a 4/6 match to TATAAT in registers 1-9: 817/4132 nAnnnT and at least a 5/6 match to TATAAT in registers 1-9: 200/4132 nAnnnT and a 6/6 match to TATAAT in registers 1-9: 12/4132

Key to table TSS Genomic coordinate of start sites. The minus sign refers to the reverse strand. Position (minus sign refers to upstream and no sign refers to downstream) relative to 5'-end of Position nearest annoated coding sequence (CDS), non-coding RNA (NC), regulatory region (RR), tRNA or pseudogene. E. coli # Identifying number of the CDS, ncRNA, tRNA or pseudogene on the E. coli MG1655 chromosome Description Description of the CDS, ncRNA, tRNA or pseudogene ITR Sequence extending from +1 (the identified transcription start site) to +14 Match Number of matches to putative σ70-dependent pause-inducing sequence elements Register The first nucleotide of the putative σ70-dependent pause-inducing sequence element

TSS Position E. coli # Description ITR Match Register -4477592 -32 CDS b4256 predicted acetyltransferase GTATAATTACTTTA 6 2 -3382316 -26 CDS b3236 malate dehydrogenase, NAD(P)-binding TTTATCAATATAAT 6 9 -3181678 810 CDS b3041 3,4-dihydroxy-2-butanone-4-phosphate synthase ATATAATTGTTCCG 6 2 -1160838 -64 CDS b1102 ferric-rhodotorulic acid outer membrane transporter ATATAATCGCTCAT 6 2 167427 -57 CDS b0150 ferrichrome outer membrane transporter CTTTATAATAATCA 6 4 1500452 -29 CDS b1431 predicted lipoprotein AGTAATATAATCAT 6 6 1891366 -25 CDS b1809 conserved protein ATGGAAGTATAATG 6 8 2288371 -151 CDS b2193 DNA-binding response regulator in two-component regulatory system CTTTATAATGAAAA 6 4 with NarQ or NarX 2807602 -37 CDS b2682 predicted transporter CTATTTATAATATT 6 6 3749991 -24 CDS b3585 predicted DNA-binding transcriptional regulator ATTATATATAATTG 6 7 4011050 -26 CDS b3829 5-methyltetrahydropteroyltriglutamate- S- TTTACATATAATTA 6 7 4177645 -374 CDS b3985 50S ribosomal subunit protein L10 CCCCACGTATAATG 6 8 -4603716 -30 CDS b4367 ferric iron reductase involved in ferric hydroximate transport ATCATTATCATTTA 5 6 -4566790 -248 CDS b4337 multidrug efflux system protein GTATATTTTCTATG 5 2 -4518437 -90 CDS b4295 KpLE2 phage-like element 3B predicted DNA-binding transcriptional ATAAAATCATGCCA 5 2 regulator -4516286 -28 CDS b4293 KpLE2 phage-like element 3B RNA polymerase, sigma 19 factor GTGATAATTAACTT 5 3 -4465303 -34 CDS b4241 DNA-binding transcriptional repressor CAAATAATTAAACA 5 3 -4417675 -27 CDS b4192 predicted L-ascorbate 6-phosphate lactonase ATTGAACTATCATG 5 8 -4229722 -68 CDS b4023 conserved protein ATATTATCAGTTCT 5 2 -3988812 -23 CDS b3805 hydroxymethylbilane synthase GGATGATAATGACG 5 5 -3946015 -25 CDS b3763 DNA-binding transcriptional regulator GACAAATAATTTTG 5 5 -3851215 55 NC ncRNA 74 istR GTTGACATAATACA 5 6 -3791734 -28 CDS b3618 predicted protein TTTTTTTATATTAA 5 7 -3662689 -48 CDS b3515 DNA-binding transcriptional activator AGTATACTGAAATT 5 3 -3654784 -21 CDS b3510 stress response protein acid-resistance protein TTTATAGTTGAGGA 5 3 -3534768 -162 CDS b3405 DNA-binding response regulator in two-component regulatory system ATCAATAATGTTTC 5 4 with EnvZ -3510372 -6 CDS b3383 conserved protein TTTATTATGCGTCG 5 3 -3479273 -90 CDS b3351 component of potassium effux complex with KefB ATGATAATGTAATG 5 3 -3475547 -106 CDS b3347 FKBP-type peptidyl-prolyl cis-trans (rotamase) ATGATAATAGGGCG 5 3 -3475488 -47 CDS b3347 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) GATAATAGTTAACC 5 1 -3316211 100 tRNA b3171 tRNA-Met AATATACTGTGAAG 5 3 -3233919 -22 CDS b3084 23S rRNA mG1835 methyltransferase, SAM-dependent ATTTTATCATTCAG 5 5 -3190379 -418 CDS b3049 predicted glycogen synthesis protein GGTTATAGAATCAT 5 6 -3181669 819 CDS b3041 3,4-dihydroxy-2-butanone-4-phosphate synthase TTCCGTTATTATGC 5 7 -3144385 -102 CDS b2997 hydrogenase 2, small subunit GATAACCATAATAA 5 7 -3117362 -228 CDS b2974 predicted inner membrane lipoprotein CAAATTTATATAGT 5 9 -3107308 -131 CDS b2965 ornithine decarboxylase, constitutive TAAAATCAGAGCGT 5 1 -3070670 -26 CDS b2926 phosphoglycerate kinase TTTTAGAATCAACG 5 4 -2909390 -29 CDS b2783 antitoxin of the ChpA-ChpR toxin-antitoxin system ACATATGATAGCGG 5 4 -2820046 -13 CDS b2697 alanyl-tRNA synthetase TTTCAGGATAATTA 5 7 -2795098 -48 CDS b2666 predicted membrane protein ATAAAATCTCTTTT 5 2 -2642409 -104 CDS b2517 23S rRNA m(2)A2503 methyltransferase, SAM-dependen ATTTGTACAATGCA 5 6 -2618264 -82 CDS b2497 uracil transporter ATAAAAATAATTAA 5 6 -2594785 -26 CDS b2475 conserved protein ATAATGAATATATT 5 9 -2580921 -122 CDS b2466 predicted protein ATAACAATAATATT 5 6 -2559079 -2378 CDS b2441 ethanolamine ammonia-, large subunit, heavy chain AGTAGAATTCTTAC 5 3 -2520527 -28 CDS b2405 DNA-binding transcriptional activator ATGTATTTATTATA 5 8 -2486315 875 CDS b2371 predicted CoA-, NAD(P)-binding ATATATTGAGCGGA 5 2 -2454827 7 CDS b2340 phosphohistidine TTTTTATCATGCGT 5 5 -2442286 -95 CDS b2325 predicted protein ATTATTATCACACG 5 3 -2425959 -146 CDS b2310 lysine//ornithine transporter subunit AGGACAATAATGCA 5 6 -2183473 -19 RR ncRNA 44 TPP CTGCGATTTATCAT 5 9 -2068377 -173 CDS b1997 KpLE2 phage-like element 3B IS2 insertion element repressor InsA ACACCATAATTATC 5 5 -2039280 2301 tRNA b1975 tRNA-Ser ATTGAAATAAAATA 5 8 -1928790 -19 CDS b1848 conserved protein regulated by LexA TTATTATGAGAGGC 5 2 -1873636 -36 CDS b1790 predicted DNA-binding transcriptional regulator AGCTAAAATGACAA 5 4 -1797807 -34 CDS b1716 50S ribosomal subunit protein L20 TTTTTAATTAGAAT 5 9 -1777365 -40 CDS b1696 predicted DNA-binding transcriptional regulator ATATATTGTTTTTG 5 2 -1723969 -25 CDS b1648 conserved protein AATAATCTTATCTG 5 1 -1669894 1279 CDS b1599 multidrug efflux system transporter ATAACTACAATCAG 5 6 -1665281 -38 CDS b1593 predicted dethiobiotin synthetase CTGGTTTATATTTG 5 7 -1665277 -34 CDS b1593 predicted dethiobiotin synthetase TTTATATTTGTGAA 5 3 -1638778 -169 CDS b1556 Qin prophage 3B predicted S lysis protein TTTCTCGTATTATT 5 8 -1421757 -3492 CDS b1356 Rac prophage 3B predicted DNA-binding transcriptional regulator ATACTGTATAAAAT 5 9 -1358991 -59 CDS b1297 gamma-Glu-putrescine synthase GTGGTCATTATATT 5 9 -1354061 -567 CDS b1293 predicted antimicrobial transporter subunit ATACAATCCGGCGA 5 2 -1292153 -8 CDS b1237 global DNA-binding transcriptional dual regulator H-NS TTACTACAATGAGC 5 5 -1213336 -54 CDS b1162 predicted DNA-binding transcriptional regulator AGTATTATTGGGTC 5 3 -1194167 7 CDS b1135 16S RNA U516 pseudouridine synthase AATTCATAATCTCT 5 5 -1120732 -22 CDS b1061 DNA damage-inducible protein I GTATATTCAACAGG 5 2 -1102550 -131 CDS b1040 DNA-binding transcriptional activator in two-component regulatory TTTTATATTTTACC 5 4 system -1027059 -63 CDS b0964 conserved protein AGTATGATTAAAGA 5 3 -1015720 -27 CDS b0954 beta-hydroxydecanoyl thioester dehydrase TTCAATAAAATAAG 5 6 -930221 -36 CDS b0887 fused cysteine transporter subunits of ABC superfamily: membrane GCAAATAATTCTGA 5 4 component/ATP-binding component -889168 -126 CDS b0847 predicted transporter ATATATTGTTACTT 5 2 -815894 -24 CDS b0780 predicted transferase with NAD(P)-binding Rossmann-fold domain GATAATCTGACTCC 5 1 -786855 -37 CDS b0755 phosphoglyceromutase 1 ATTATTATCATTAA 5 3 -784607 -67 CDS b0753 conserved protein TATATTCACCTGCA 5 1 -784070 -24 CDS b0752 zinc efflux system AGAATAATTAAGGG 5 3 -753904 -213 CDS b0720 citrate synthase AAGTTTAATAATTC 5 7 -753901 -210 CDS b0720 citrate synthase TTTAATAATTCGGA 5 4 -700877 -60 CDS b0676 DNA-binding transcriptional dual regulator, repressor of N- TTTTAAAATCACCA 5 4 acetylglucosamine -643364 -174 CDS b0610 regulator of nucleoside diphosphate kinase TTTATACATAATGC 5 7 -576080 -32 gene b0553 pseudogene TTTTTAATAATAGT 5 6 -506463 -157 CDS b0481 conserved protein TTTTTATTATTATG 5 5 -485310 -467 CDS b0463 multidrug efflux system AATAATCGACGCCG 5 1 -484922 -79 CDS b0463 multidrug efflux system ACGATAATATAAAC 5 3 -466565 -29 CDS b0445 predicted transporter subunit: periplasmic-binding component of ABC ATAGTTAAATAATA 5 8 superfamily -189545 -39 CDS b0168 methionine aminopeptidase ATATATTGTCGGTA 5 2 -141263 -38 CDS b0124 glucose dehydrogenase GCTACTAAAATATT 5 6 -118679 -34 CDS b0109 quinolinate phosphoribosyltransferase ACCTTATGATTCGT 5 5 -112703 -104 CDS b0102 conserved protein ATTGATAATAACGG 5 4 -77336 -37 CDS b0069 DNA-binding transcriptional regulator ATAAAATTGCTGTC 5 2 8230 -8 CDS b0008 transaldolase B ATACTATCATGACG 5 5 12142 -21 CDS b0014 chaperone Hsp70, co-chaperone with DnaJ ATATATAGTGGAGA 5 4 25695 -131 CDS b0028 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) ACAATAATAAACCC 5 3 106507 -50 CDS b0096 UDP-3-O-acyl N-acetylglucosamine deacetylase CGAATGTATAGTAC 5 7 127700 -212 CDS b0116 lipoamide dehydrogenase, E3 component is part of three TTTTGTAAAATACC 5 6 complexes 176558 -52 CDS b0156 conserved protein ATTATTATTGGGTT 5 3 192797 -75 CDS b0172 ribosome recycling factor AGGGCTATACTTAG 5 6 202074 -27 CDS b0180 (3R)-hydroxymyristol acyl carrier protein dehydratase TTCTTATATTTTGA 5 5 248128 491 CDS b0228 conserved protein TTCATAATTGTGCG 5 3 253336 -143 CDS b0235 pseudogene TTATATACTCTAAA 5 4 259572 -40 CDS b0242 gamma-glutamate kinase GTTTGATATCATTT 5 7 259576 -36 CDS b0242 gamma-glutamate kinase GATATCATTTTTCC 5 3 259584 -28 CDS b0242 gamma-glutamate kinase TTTTCCTAAAATTG 5 7 302183 -32 CDS b0287 conserved inner membrane protein GTGTATAACATAAT 5 9 345656 -52 CDS b0329 predicted protein AACCCAATAATGTG 5 6 400916 -55 CDS b0383 bacterial ACTTATAGTCGCTT 5 4 433817 -54 CDS b0415 riboflavin synthase beta chain ATTATGCTAAAATC 5 8 433820 -51 CDS b0415 riboflavin synthase beta chain ATGCTAAAATCCGC 5 5 443861 -46 CDS b0426 predicted nucleotide binding protein TTTGCGGGTATTAT 5 9 455829 -72 CDS b0437 proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine ACTAGCTGATAATC 5 8 proteases 493170 590 RR ncRNA 7 DnaX ATTGCGGATAATAA 5 7 494314 -30 CDS b0473 molecular chaperone HSP90 family CTTAAAATGGCATT 5 3 594797 -26 CDS b0572 copper/silver efflux system, outer membrane component ATAAAATCACCAGA 5 2 611909 -129 CDS b0585 enterobactin/ferric enterobactin ATATATTTCTGCAA 5 2 849622 -51 CDS b0814 outer membrane protein TTTTGATATATTTA 5 7 849628 -45 CDS b0814 outer membrane protein TATATTTAAAACTT 5 1 882872 -24 CDS b0842 multidrug efflux system protein GATTATTATTGGCG 5 4 903746 -70 CDS b0866 conserved protein CTTTCAATAATAGC 5 6 903762 -54 CDS b0866 conserved protein ATCAGTCTGATAAT 5 9 921194 -942 CDS b0881 regulatory protein for ClpA specificity ATATTATGCTGGTG 5 2 946080 -372 CDS b0899 predicted transporter CTATACTGTGGGAA 5 2 956802 -74 CDS b0907 3-phosphoserine/phosphohydroxythreonine aminotransferase ACAGGAATAATGTA 5 6 982054 -244 CDS b0926 conserved protein TTATGATCTGCCTG 5 2 1023665 -29 CDS b0962 DNA IV GAAATAATTTCGTG 5 3 1073321 -144 CDS b1013 predicted DNA-binding transcriptional regulator ATCTAAAATATCTG 5 4 1084120 -95 CDS b1020 conserved protein with nucleoside triphosphate domain AAATATATTGTTGC 5 4 1150734 -104 CDS b1094 acyl carrier protein (ACP) TAAAATCGTGGTAA 5 1 1185028 -39 CDS b1127 peptidase T CTTCTTAATAATGT 5 7 1236748 -46 CDS b1189 D- dehydrogenase ATTAGATTATTATT 5 8 1236754 -40 CDS b1189 D-amino acid dehydrogenase TTATTATTCTTTTA 5 2 1331795 -84 CDS b1275 DNA-binding transcriptional dual regulator, O-acetyl-L-serine- TTTTTTATTATTAA 5 6 binding 1333114 -70 CDS b4522 hypothetical protein ATCGTATGATTAAT 5 5 1389971 -44 CDS b1328 predicted DNA-binding transcriptional regulator AGACCTATCATTTA 5 6 1406048 -26 CDS b1342 predicted Zn(II) transporter AATAATGCGTTGAT 5 1 1465734 2318 gene b1405 pseudogene ATATAGTTATACCA 5 2 1498559 -38 CDS b1429 potassium-tellurite ethidium and proflavin transporter CAAATATACTTTAT 5 5 1508002 -25 CDS b1439 fused predicted DNA-binding transcriptional regulator/predicted ATCTGCACATAATT 5 8 amino transferase 1590496 -9018 CDS b1513 fused AI2 transporter subunits of ABC superfamily: ATP-binding TAAGGGGATATTAT 5 9 components 1659685 1105 CDS b1588 subunit CTTATATTTGTCAG 5 3 1678869 -131 CDS b1606 dihydrofolate reductase isozyme ATACCCATGATAAT 5 9 1703230 -44 CDS b1626 conserved inner membrane protein CTAAAATTAGATTT 5 2 1717783 -117 CDS b1641 outer membrane lipoprotein TTTCATTATGATTT 5 7 1733380 -22 CDS b1656 superoxide dismutase, Fe TTAATAATAAAGGA 5 3 1848858 -26 CDS b1767 cytoplasmic L- I CTTTCGATATCATT 5 8 1861848 -26 CDS b1780 conserved protein ATAAAATGAAGTTA 5 2 1940614 -72 CDS b1858 zinc transporter subunit: ATP-binding component of ABC superfamily ACCAATAATCGTAA 5 4 2023477 -58 CDS b1955 conserved protein TCTTTGATAATTTG 5 6 2066552 -107 CDS b1998 pseudogene ATATTTACAATTTA 5 6 2278630 -24 CDS b2184 predicted ATP-dependet helicase AGAATAATCTACCT 5 3 2311106 0 NC regulatory antisense sRNA affecting ompF expression GCTATCATCATTAA 5 3 2464537 -30 CDS b2349 CPS-53 (KpLE1) prophage 3B predicted prophage CPS-53 integrase AAAATAATTTTACC 5 3 2483950 1554 CDS b2370 hybrid sensory histidine kinase in two-component regulatory system ATTAAAATGCCCAA 5 3 with EvgA 2516429 -60 CDS b2398 predicted DNA-binding transcriptional regulator ATAAAATGAACTAC 5 2 2546310 186 CDS b2430 predicted periplasmic esterase ATTAAAGATAATCA 5 7 2723856 1706 CDS b2586 predicted protein ATATCATTATGCAA 5 2 2947233 -31 CDS b2818 fused acetylglutamate kinase homolog (inactive)/amino acid N- AATTTCGAATAATC 5 8 acetyltransferase 2967638 -46 CDS b2831 methyl-directed mismatch repair protein ATTCGGCACATAAT 5 9 2969260 -33 CDS b2833 predicted protein ATTATCATAGGTAG 5 3 2988440 -136 CDS b2850 pseudogene CAATACTAAAATTA 5 7 3094639 -64 CDS b2954 dITP/XTP pyrophosphatase ATTAAAATCATTAA 5 3 3182820 -42 CDS b3042 conserved protein ACTACAATGGCACT 5 3 3217481 -35 CDS b3073 putrescine:2-oxoglutaric acid aminotransferase, PLP-dependent GGTATCATGTGATA 5 3 3352068 -586 CDS b3212 glutamate synthase, large subunit TGCATAATCTGATA 5 3 3360933 104 CDS b3216 predicted outer membrane protein ATTAAAATCACTAG 5 3 3387502 -40 CDS b3243 predicted DNA-binding transcriptional regulator, efflux system ATATTATGTGATCT 5 2 3395856 -5650 CDS b3253 predicted oxidoreductase, Zn-dependent and NAD(P)-binding AATAATTCATACGT 5 1 3402769 15 CDS b4646 pseudogene AATAATCTGATTTT 5 1 3431672 -40 CDS b3287 peptide deformylase AAATAATCTTTCTA 5 2 3543618 -28 CDS b3414 predicted gluconate transport associated protein TAAAATAGTCAACT 5 1 3607131 -109 CDS b3471 conserved inner membrane protein TATCATGCGGCGGC 5 1 3610844 -148 CDS b3475 holo-(acyl carrier protein) synthase 2 CGTGTGTAAAATCT 5 7 3667572 -43 CDS b3519 cytoplasmic trehalase GAAAAGCCGATAAT 5 9 3710942 -173 CDS b3549 3-methyl- DNA glycosylase I, constitutive TTTTTTTTATGATC 5 8 3794947 -24 CDS b3622 O-antigen TTATCATCATTATA 5 2 3795078 107 CDS b3622 O-antigen ligase ATTCGTCGATAATA 5 8 3841958 -29 CDS b3665 cryptic adenine deaminase CAAATTGATAAAAT 5 9 3841961 -26 CDS b3665 cryptic adenine deaminase ATTGATAAAATCAA 5 6 3854453 15 CDS b3677 predicted inner membrane protein CAAAATAAAATCAG 5 6 3865740 -11 CDS b3688 conserved outer membrane protein ATGAATTTATTATG 5 8 3865744 -7 CDS b3688 conserved outer membrane protein ATTTATTATGATAA 5 4 3920627 -4551 CDS b3744 asparagine synthetase A AGTGCATACAATTG 5 7 3965913 -26 CDS b3784 UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase AATAATTTTCTCTG 5 1 4002852 -33 CDS b3821 outer membrane A CTTATCAATAATTC 5 7 4010921 -155 CDS b3829 5-methyltetrahydropteroyltriglutamate-homocysteine S- ACGGCTAAAATCCT 5 6 methyltransferase 4010925 -151 CDS b3829 5-methyltetrahydropteroyltriglutamate-homocysteine S- CTAAAATCCTTCGT 5 2 methyltransferase 4022835 -176 CDS b3843 3-octaprenyl-4-hydroxybenzoate decarboxylase AGGATTGCATAATG 5 8 4049330 -40 CDS b3866 conserved protein CAAATCTATACTGA 5 7 4148383 3222 CDS b3953 predicted enzyme IIB component of PTS AGAAATATATTGAA 5 6 4159102 -45 CDS b3963 DNA-binding transcriptional repressor TGGTATAGTGCCAG 5 4 4225625 -129 CDS b4020 predicted transporter AGGCTGGAATAATC 5 8 4254510 -150 CDS b4042 diacylglycerol kinase TTAATAATGCAAAT 5 3 4349836 -30 CDS b4126 conserved protein GATAATCATACTGA 5 1 4389592 -35 CDS b4162 oligoribonuclease ATCAATATAGTCAC 5 6 4390242 -141 tRNA b4163 tRNA-Gly CTTGCTGATAATTT 5 7 4434600 -178 CDS b4214 PAPS (adenosine 3 -phosphate 5 -phosphosulfate) 3 (2 ),5 - TTTTATCATCGGGA 5 4 bisphosphate 4437534 -76 CDS b4217 conserved protein GCATTAAAATTTGC 5 5 4437536 -74 CDS b4217 conserved protein ATTAAAATTTGCGC 5 3 -4638703 -374 CDS b4401 Aerobic respiration control Response regulator AGTTGGATTATTAA 4 6 -4628586 -41 CDS b4391 fused predicted transporter subunits of ABC superfamily: ATP-binding GAAAACTCATTATC 4 8 components -4593888 -14 CDS b4357 predicted DNA-binding transcriptional regulator ACAAGGAGGAAAAT 4 9 -4587083 19 CDS b4353 conserved protein AGGCAAAAAAATAT 4 7 -4565269 0 CDS b4336 conserved inner membrane protein ATGAATAAACTCAT 4 6 -4549357 -38 CDS b4321 fructuronate transporter CAAAATAACAACGG 4 1 -4536784 4 CDS b4310 conserved protein ATAAAACAATAACG 4 5 -4530385 -52 gene b4656 pseudogene AATACATATTCAGT 4 5 -4471189 43 CDS b4248 predicted mRNA TATATGCTGAGCAT 4 3 -4431182 -103 CDS b4210 predicted inner membrane protein TTAAAGTGGCATCC 4 2 -4430032 -26 CDS b4209 predicted regulator of morphogenesis and cell wall metabolism ATCTTATTAAGAAT 4 9 -4427775 -1035 CDS b4206 predicted cell envelope opacity-associated protein GATGAATACTAAGA 4 5 -4427737 -997 CDS b4206 predicted cell envelope opacity-associated protein TTTAAAGTGAGTGT 4 3 -4422866 -52 CDS b4199 predicted protein AGAAGATCATCACA 4 5 -4416505 -29 CDS b4191 DNA-binding transcriptional dual regulator AAAAAAATCAAATT 4 3 -4348570 -513 CDS b4124 DNA-binding response regulator in two-component regulatory system TTACATTCTCAAAA 4 2 with DcuS -4332070 -97 CDS b4113 DNA-binding response regulator in two-component regulatory system ACAATTTATTCTCC 4 7 with BasS -4262317 -63 CDS b4051 quinone oxidoreductase, NADPH-dependent ATAAAGAATGGGTC 4 4 -4238277 -199 CDS b4620 hypothetical protein, no homologs TGTATGTTTTGTTC 4 3 -4194882 -51 CDS b3995 stationary phase protein, binds sigma 70 RNA polymerase subunit TTTTACATTTCTCA 4 4 -4152919 -49 CDS b3957 acetylornithine deacetylase TAAATACTGCATGA 4 3 -4118430 -58 CDS b3930 1,4-dihydroxy-2-naphthoate octaprenyltransferase AATCATTTTCATCA 4 1 -4118424 -52 CDS b3930 1,4-dihydroxy-2-naphthoate octaprenyltransferase TTTCATCATTGTTT 4 4 -4098760 -212 CDS b3907 L-rhamnose:proton symporter ATGATATTGAAAAT 4 3 -4098605 -57 CDS b3907 L-rhamnose:proton symporter TTTTTACACTCATC 4 5 -4007109 -27 CDS b3824 neutral amino-acid efflux system CAAAAATAGACACA 4 2 -3987493 358 CDS b3804 uroporphyrinogen III synthase AATTACAAAATATT 4 6 -3987236 -147 CDS b3803 predicted uroporphyrinogen III methylase TTACTACACTGTCG 4 5 -3984114 -84 CDS b3801 acrylsulfatase-like enzyme AATCATCCTGTCAG 4 1 -3957862 -26 CDS b3775 peptidyl-prolyl cis-trans isomerase C (rotamase C) GACAATTATTCACT 4 1 -3925053 -27 CDS b3743 DNA-binding transcriptional dual regulator AATCATCAATCCGC 4 1 -3913244 -21 CDS b3730 fused N-acetyl glucosamine-1-phosphate uridyltransferase/glucosamine- CAAATTACAGTCAG 4 6 1-phosphate acetyl transferase -3891867 2765 CDS b3714 predicted inner membrane protein AGAGTAATCATTTA 4 6 -3804755 335 CDS b3631 glucosyltransferase I TTTTTTATATCGTT 4 8 -3803796 177 CDS b3630 kinase that phosphorylates core heptose of lipopolysaccharide ATTATAAAAAATCT 4 7 -3799236 -248 CDS b3625 lipopolysaccharide core biosynthesis protein ATTCATTATACAGG 4 4 -3790746 -172 CDS b3617 glycine C-acetyltransferase ATCATTATGCCCAG 4 3 -3740563 -8 CDS b3574 predicted DNA-binding transcriptional repressor GCGACAAAATGGGG 4 5 -3711033 -76 CDS b3548 conserved protein AGGGCTACTATGCC 4 6 -3705750 -22 CDS b3544 dipeptide transporter ACATCACAATTGGA 4 5 -3677219 -9 CDS b3525 EAL domain containing protein involved in flagellar function ACATCTTTGATGAT 4 9 -3663864 -31 CDS b3516 DNA-binding transcriptional dual regulator AGTAATATGTTTAT 4 3 -3663855 -22 CDS b3516 DNA-binding transcriptional dual regulator TTTATGTAATATTA 4 7 -3638759 -1016 CDS b3494 predicted universal stress (ethanol tolerance) protein B AGAAAATAACCAGA 4 2 -3635522 -89 CDS b3492 predicted oxidoreductase with FAD/NAD(P)-binding domain CAAATACTTCCTTT 4 3 -3617187 -7431 CDS b3473 predicted transporter GACAGTATCTTCAT 4 6 -3609782 -26 CDS b3473 predicted transporter ACTGTTGTAAAAAT 4 9 -3598893 -87 CDS b3461 RNA polymerase, sigma 32 (sigma H) factor AGTGAATGATAACC 4 5 -3597785 -104 CDS b3460 leucine/isoleucine/valine transporter subunit AGAGTATGCTGCTA 4 5 -3595769 -186 CDS b3458 leucine transporter subunit TAAATTCAGAATAT 4 1 -3590437 -89 CDS b3453 glycerol-3-phosphate transporter subunit TTATTTTTCTGTAA 4 2 -3582323 2523 CDS b3447 gamma-glutamyltranspeptidase ACTGTCCATGATTT 4 7 -3572903 -2 CDS b3433 aspartate-semialdehyde dehydrogenase, NAD(P)-binding TTATGAAAAATGTT 4 6 -3559883 -37 CDS b3425 thiosulfate:cyanide sulfurtransferase (rhodanese) TAAATTTGCCCACT 4 1 -3556202 -101 CDS b3421 conserved protein TTTTTTAAAACAAT 4 9 -3556197 -96 CDS b3421 conserved protein TAAAACAATGAATT 4 4 -3556144 -43 CDS b3421 conserved protein TTGCAATTATCAGG 4 5 -3534729 -123 CDS b3405 DNA-binding response regulator in two-component regulatory system GCTGTTTAATATGC 4 7 with EnvZ -3530543 -82 CDS b3402 predicted inner membrane protein TTTTTGATTATTTT 4 6 -3524254 -83 CDS b3397 ADP-ribose diphosphatase ATGTAAATAACATG 4 8 -3483867 -27 CDS b3356 conserved protein GAAAATTGACGCAG 4 1 -3472640 -66 CDS b3342 30S ribosomal subunit protein S12 CTCATATTGTGTGA 4 3 -3440636 -64 RR ncRNA 70 Alpha RBS TTTCGCATATTTTT 4 6 -3378033 -14 CDS b3232 conserved protein with nucleoside triphosphate hydrolase domain ATAACAATAAGATC 4 3 -3372540 -29 CDS b3226 DNA-binding transcriptional dual regulator GATGATGTTAATCA 4 1 -3371642 -44 CDS b3225 N-acetylneuraminate lyase AAAGGTATATCGTT 4 8 -3338154 -67 CDS b3195 predicted toluene transporter subunit: ATP-binding component of ABC ATATGTTGGGTTCA 4 2 superfamily -3338123 -36 CDS b3195 predicted toluene transporter subunit: ATP-binding component of ABC ATGCTTAGAAAATC 4 8 superfamily -3331538 -65 CDS b3186 50S ribosomal subunit protein L21 CTATTGTGAATATT 4 2 -3330183 -407 CDS b3183 GTPase involved in cell partioning and DNA repair TTTTACTGTACACT 4 9 -3323252 -319 CDS b3177 7,8-dihydropteroate synthase ATATTCTGCATGCG 4 2 -3299434 -136 CDS b3157 predicted lipid carrier protein GACAATTTTTGATT 4 1 -3190024 -63 CDS b3049 predicted glycogen synthesis protein GAATACTGAAATCA 4 2 -3182740 0 RR ncRNA 62 FMN GCTTATTCTCAGGG 4 4 -3180462 -33 CDS b3039 predicted dioxygenase ATCAAAATGACACC 4 3 -3173667 -249 CDS b3030 DNA topoisomerase IV, subunit B ATATTTACGATCTT 4 6 -3164043 -48 CDS b3019 DNA topoisomerase IV, subunit A AATATTGCCCCTTT 4 1 -3159202 -34 CDS b3016 conserved protein CTTTGATTATTTTT 4 5 -3153212 28 CDS b3010 predicted DNA-binding transcriptional regulator GCCGCATTATTCCT 4 5 -3136551 -7 CDS b2988 fused glutathionylspermidine amidase/glutathionylspermidine TAAAGTGATGAGCA 4 1 synthetase -3111570 -71 CDS b2971 predicted protein TTTTAATGATAACC 4 5 -3093107 -5 CDS b2950 predicted transporter TTAGTATGAATATG 4 2 -3081908 -89 CDS b2937 AATTTATTGTGACA 4 5 -3066858 -28 CDS b2923 arginine transporter ATCAGATACTTAAT 4 5 -3053495 -29 CDS b2909 predicted protein AATATTCCTCCCTT 4 1 -3023627 3407 CDS b2886 predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit TTTTAAAAATTTCG 4 5 -2972534 -650 CDS b2835 predicted inner membrane protein TAAATTTGGCCTGC 4 1 -2967018 -19 CDS b2830 nucleotide hydrolase TTTATTTTGAGGTA 4 3 -2953935 90 CDS b2820 V (RecBCD complex), beta subunit TTTACGATTGCGGC 4 3 -2922556 -19 NC ncRNA 55 CsrB TTCTATCTTCGTCG 4 4 -2913051 -29 CDS b2785 23S rRNA m(5)U1939 methyltransferase, SAM-dependent CACACTGTTAAATT 4 9 -2912027 -354 CDS b2784 (p)ppGpp synthetase I/GTP pyrophosphokinase CTTACAGAATGTGA 4 5 -2911869 -196 CDS b2784 (p)ppGpp synthetase I/GTP pyrophosphokinase TTTATGTATCCTGT 4 7 -2909279 82 CDS b2783 antitoxin of the ChpA-ChpR toxin-antitoxin system ATATTGATGATGAA 4 6 -2902483 957 CDS b2777 conserved protein GGTAGATTGTGACT 4 3 -2841124 -59 CDS b2717 protease involved in processing C-terminal end of HycE AAGTATGCTGCATG 4 4 -2822395 -27 CDS b2700 conserved protein ATAAATTTTTGACT 4 2 -2821878 -87 CDS b2699 DNA strand exchange and recombination protein with protease and ACACTTGATACTGT 4 7 activity -2821840 -49 CDS b2699 DNA strand exchange and recombination protein with protease and AACAGAACATATTG 4 8 nuclease activity -2821834 -43 CDS b2699 DNA strand exchange and recombination protein with protease and ACATATTGACTATC 4 2 nuclease activity -2817295 -127 CDS b2696 pleiotropic regulatory protein for carbon source metabolism AACAGAATGTAATG 4 3 -2815550 -25 CDS b2690 predicted hydrolase ATATTTTTCGACTT 4 2 -2812784 -29 CDS b2687 S-ribosylhomocysteinase TTTTTAAAAAAATT 4 8 -2796579 -62 CDS b2669 DNA binding protein, nucleoid-associated GATCGCTTACACTA 4 8 -2796559 -42 CDS b2669 DNA binding protein, nucleoid-associated GAAATACTTTTTTT 4 3 -2795088 -38 CDS b2666 predicted membrane protein TTTTTAAACAATGA 4 7 -2779623 1125 CDS b2647 adhesin-like autotransporter GGCACACAGAATAT 4 7 -2745876 -59 CDS b2610 Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) CAAAATACTGATGA 4 1 -2744276 -69 CDS b2609 30S ribosomal subunit protein S16 GCTTTTAATATGAC 4 6 -2714543 -72 CDS b2579 pyruvate formate lyase subunit AAGCAACAATGGTT 4 5 -2707654 -228 CDS b2572 anti-sigma factor GAGACAGATAGTTT 4 7 -2696614 -42 CDS b2560 conserved protein AGCGAAAATTAATC 4 4 -2685545 -115 CDS b2553 regulatory protein P-II for glutamine synthetase ATTTTATAAACTGC 4 7 -2683559 -30 CDS b2551 serine hydroxymethyltransferase TTTTATTGTTAGCT 4 4 -2658178 133 CDS b2529 scaffold protein TTAAAGTCAACGAT 4 2 -2635401 -23 CDS b2511 predicted GTP-binding protein TTTATAAAAATGAG 4 6 -2632127 -35 CDS b2508 IMP dehydrogenase AATATTTATTAACC 4 1 -2594806 -47 CDS b2475 conserved protein GAACCACCTACGAT 4 9 -2588907 -19 CDS b4606 hypothetical protein AATTATAAGAGAGG 4 1 -2580929 -130 CDS b2466 predicted protein ACTGAAAAATAACA 4 5 -2576553 -154 CDS b2463 fused malic enzyme predicted oxidoreductase/predicted ATAGGATTATTACC 4 2 phosphotransacetylase -2556852 -151 CDS b2441 ethanolamine ammonia-lyase, large subunit, heavy chain ATAACCCCGATCAT 4 9 -2550165 -5 CDS b2434 predicted acyltransferase with acyl-CoA N-acyltransferase domain ATACCATGGAGATA 4 2 -2548612 -45 CDS b2431 conserved protein AACAATGCCACGGA 4 1 -2535298 -39 CDS b2418 pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase GGATTACGATGAGG 4 5 -2518796 -102 CDS b2400 glutamyl-tRNA synthetase CGAACTACATTGAG 4 6 -2510875 -147 CDS b2392 manganese/divalent cation transporter AACCATAACATTCA 4 6 -2446495 -33 CDS b2330 N5-glutamine methyltransferase CGAAATTATTGCGA 4 4 -2429694 12 CDS b2314 conserved protein TTTCAGAATCGGTT 4 4 -2411704 -550 CDS b2295 conserved inner membrane protein AACGATAAAGTTGA 4 6 -2403201 -107 CDS b2288 NADH:ubiquinone oxidoreductase, membrane subunit A ATTTCTACAGTGAT 4 6 -2383833 -89 CDS b2270 conserved protein TTTCGATATTGTAT 4 5 -2347522 -28 CDS b2237 conserved protein CGTTAATAAAAATG 4 8 -2337473 -31 CDS b2231 DNA gyrase (type II topoisomerase), subunit A ATCCGGGATACAGT 4 9 -2246582 -28 CDS b2156 lysine transporter TCATTTTTAAGATG 4 8 -2183843 -25 CDS b2105 conserved protein ATATTCTTGTTAAC 4 2 -2175234 -8 CDS b2096 D-tagatose 1,6-bisphosphate aldolase 2, catalytic subunit ATATGAAAATGTAC 4 5 -2141004 -32 CDS b2066 uridine/cytidine kinase CTAACATCCAGGTT 4 2 -2140303 -64 CDS b2065 2 -deoxycytidine 5 -triphosphate deaminase ATAACCTAGTATGC 4 7 -2109105 -62 CDS b2039 glucose-1-phosphate thymidylyltransferase TTTAATAGTTTTTG 4 4 -2107951 211 CDS b2038 dTDP-4-deoxyrhamnose-3,5-epimerase ATAAACTTGTACGC 4 2 -2100996 -61 CDS b2030 IS5 transposase and trans-activator TTTATTGTGTCATT 4 3 -2096336 -11 CDS b2027 regulator of length of O-antigen component of lipopolysaccharide TTAGGGTAATGATG 4 8 chains -2085346 -208 CDS b4678 expressed protein ATTATTCTGACAAG 4 3 -2083576 -27 CDS b2013 predicted inner membrane protein ATTAACATTCATCT 4 3 -2083552 -3 CDS b2013 predicted inner membrane protein TTTATGTTTTCAAT 4 3 -2077410 -25 CDS b2007 conserved protein CTCTCACATTATCA 4 7 -2027413 -23 CDS b1958 conserved inner membrane protein TTCAACAATAAAAA 4 4 -1998492 -83 CDS b1920 cystine transporter subunit GAATAAGATGTAGC 4 4 -1994917 -61 CDS b1916 DNA-binding transcriptional activator ATGTGATAGTTTGA 4 5 -1986026 -43 CDS b4663 expressed protein CAAAGACAATAACA 4 5 -1985809 -27 CDS b4537 predicted protein CTTTCAAAATGCTA 4 5 -1976309 -88 CDS b1892 DNA-binding transcriptional dual regulator with FlhC TAATTATTTTTTAC 4 2 -1944032 -32 CDS b1861 component of RuvABC resolvasome, regulatory subunit ATTATCTTTGATTC 4 3 -1940637 -30 CDS b1857 zinc transporter subunit: periplasmic-binding component of ABC CTCATATTCATTAC 4 3 superfamily -1934398 -60 CDS b1852 glucose-6-phosphate dehydrogenase AAGAAAATTACAAG 4 3 -1928440 -26 CDS b1847 predicted protein TGAATCATTGTGCT 4 3 -1927758 -27 CDS b1846 conserved protein ACTAAAAATGGTTA 4 4 -1910642 -42 CDS b1829 predicted endopeptidase ATCGCATATTGCGT 4 5 -1910628 -28 CDS b1829 predicted endopeptidase TTTGTTAAACTGAG 4 6 -1905108 -24 CDS b1822 23S rRNA m(1)G745 methyltransferase CTTTAGTATCCTGC 4 4 -1896478 3131 CDS b1816 fused predicted membrane protein/conserved protein TTTTAATGATCCGT 4 5 -1892777 -22 CDS b1811 conserved protein AACAATTTAGCAGG 4 1 -1842041 854 CDS b1762 predicted inner membrane protein TTATCAAAAAAATA 4 8 -1840186 -27 CDS b1760 predicted protein AGAGACAATAACGT 4 4 -1815394 -235 CDS b1733 conserved protein TAAAGTAATGGGGC 4 1 -1811716 -29 CDS b1731 cell division modulator TTTTTAATATGCGT 4 5 -1792219 -86 CDS b1710 predicted glutathione peroxidase TTATTGTTAAAAGC 4 2 -1790784 -29 CDS b1708 predicted lipoprotein AAGAATAAAAAACA 4 1 -1753189 -24 CDS b1675 predicted protein TGGCATGATAAATA 4 4 -1732213 -88 CDS b1654 conserved protein AGCGTGATGAAAAT 4 9 -1722703 -24 CDS b1646 superoxide dismutase, Cu, Zn GAATGCACAATGAA 4 6 -1718884 -36 CDS b1642 DNA-binding transcriptional activator ATAATATCTTAGCA 4 2 -1716058 -27 CDS b1638 pyridoxine 5 -phosphate oxidase ACCCACTGACAATC 4 8 -1697265 -61 CDS b1620 DNA-binding transcriptional repressor ATAAGATAAATAAA 4 2 -1696131 -67 CDS b1619 7-alpha-hydroxysteroid dehydrogenase, NAD-dependent TTAATGATAAAAAA 4 3 -1696124 -60 CDS b1619 7-alpha-hydroxysteroid dehydrogenase, NAD-dependent TAAAAAATGTGGCA 4 3 -1694118 -23 CDS b1617 beta-D-glucuronidase ATTATCTTAATGAG 4 3 -1682812 1800 CDS b1611 fumarate hydratase (fumarase C),aerobic Class II ATATGTTTATTAGC 4 2 -1676026 -99 CDS b1603 pyridine nucleotide transhydrogenase, alpha subunit TTTATTTTAACGGA 4 3 -1666625 -37 CDS b1594 DNA-binding transcriptional repressor AGATTATTTCGGAG 4 2 -1599295 -30 CDS b1512 lsr operon transcriptional repressor TTTAAATATGTTCA 4 7 -1584688 -178 CDS b1501 predicted oxidoreductase ATGAGAGATGATGC 4 7 -1570097 -28 CDS b1493 glutamate decarboxylase B, PLP-dependent GCGATCCAATCATT 4 8 -1568587 -74 CDS b1492 predicted glutamate:gamma-aminobutyric acid antiporter AAAATATTGTTCTG 4 3 -1554479 -175 CDS b1481 biofilm-dependent modulation protein ATTAATCGGATCAT 4 9 -1551892 -30 CDS b1478 ethanol-active dehydrogenase/acetaldehyde-active reductase ATGCAGAACATCAT 4 9 -1516897 -27 CDS b1448 predicted acyltransferase with acyl-CoA N-acyltransferase domain ATCATCATTATTTT 4 3 -1515242 -24 CDS b4598 hypothetical protein GGGCAATGATAAAA 4 5 -1493095 0 CDS b1422 predicted DNA-binding transcriptional regulator ATGGAAAAAAATAG 4 7 -1440942 -75 CDS b1380 fermentative D-lactate dehydrogenase, NAD-dependent TTTCAATTAAATTT 4 8 -1433735 -92 CDS b1376 stress-induced protein, ATP-binding protein CTTTGATCTAAATT 4 9 -1433665 -22 CDS b1376 stress-induced protein, ATP-binding protein GGATACTAAAACAG 4 2 -1405893 -74 CDS b1341 predicted diguanylate cyclase, GGDEF domain signalling protein AATTATCTGATCAT 4 1 -1402707 -118 CDS b1338 predicted peptidase, aminobenzoyl-glutamate utilization protein AGATGATTGTGTCA 4 2 -1393949 -3 CDS b1330 conserved inner membrane protein ACAATGATCGCTGA 4 3 -1388647 -25 CDS b1326 murein peptide amidase A AATACTTCCTGAAC 4 1 -1365969 -33 CDS b1303 DNA-binding transcriptional activator AGCGAATTACACTA 4 8 -1344866 -100 CDS b1285 modulator of Rnase II stability ATAAAAAAAACAAT 4 9 -1327190 -54 CDS b1271 predicted oxoacyl-(acyl carrier protein) reductase, EmrKY-TolC CAAAGTCATAAAGT 4 9 system -1297392 -48 CDS b1241 fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol TCGAGCAGATGATT 4 8 dehydrogenase/pyruvate-formate lyase deactivase -1297367 -23 CDS b1241 fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol TTTAACATTATCAG 4 3 dehydrogenase/pyruvate-formate lyase deactivase -1289388 -1033 CDS b1233 conserved protein AGATAAAAATTCTG 4 5 -1277086 -245 CDS b1222 sensory histidine kinase in two-component regulatory system with ATCATTGATATTTA 4 7 NarL -1271119 -47 CDS b1216 /sodium:proton antiporter CTATTTTTTACATT 4 2 -1232278 -25 CDS b1185 oxidoreductase that catalyzes reoxidation of DsbA protein disulfide CTATGCATATTGCA 4 6 isomerase I -1202156 0 CDS b1145 e14 prophage 3B repressor protein phage e14 ATGAAAACAATCCA 4 6 -1197501 -41 CDS b1138 e14 prophage 3B predicted inner membrane protein AATTAAATATTACC 4 6 -1189714 -44 CDS b1130 DNA-binding response regulator in two-component regulatory system ATCGCGTTACACTA 4 8 with PhoQ -1189706 -36 CDS b1130 DNA-binding response regulator in two-component regulatory system ACACTATTTTAATA 4 5 with PhoQ -1173215 -28 CDS b1114 transcription-repair coupling factor ATATCCTAACGAGA 4 2 -1129388 -37 CDS b1071 anti-sigma factor for FliA (sigma 28) AACACATGATAAAA 4 5 -1114756 -43 CDS b1053 predicted drug efflux system CTTCTTATGTTCAC 4 6 -1020172 -30 CDS b0958 SOS cell division inhibitor ATACAGTAACTCAC 4 2 -1019302 -26 CDS b0957 outer membrane protein A (3a 3BII 3BG 3Bd) TTTTGGATGATAAC 4 6 -1006847 -24 CDS b0947 predicted 2Fe-2S cluster-containing protein TTATTTTCATTTGA 4 2 -988242 -34 CDS b0930 asparaginyl tRNA synthetase TTTATTTTTTCCGA 4 3 -914515 -435 CDS b0874 predicted transporter TTCATCATCTTGTT 4 3 -903736 -46 CDS b0865 predicted lipoprotein ATTATCGTAGAACG 4 3 -899828 -30 CDS b0860 arginine transporter subunit ATCATAAGATTGAC 4 5 -890020 -44 CDS b0849 glutaredoxin 1, redox coenzyme for ribonucleotide reductase (RNR1a) TTTAGCGTGATCAT 4 9 -855021 -54 CDS b0819 L,D-transpeptidase linking Lpp to murein AATACTCTAATATT 4 1 -852270 -7 NC Novel sRNA, function unknown AATGCAATCATCCC 4 6 -848160 -26 CDS b0812 Fe-binding and storage protein ACATAACATCAAGA 4 4 -828206 -2 CDS b0794 fused predicted transporter subunits of ABC superfamily: ATP-binding ACATGAATGATGCC 4 6 components -791309 -31 CDS b0759 UDP-galactose-4-epimerase ATTTCATACCATAA 4 7 -710003 -55 CDS b4637 ryhB-regulated fur leader peptide ATTAACAATATTTG 4 4 -709945 3 CDS b4637 ryhB-regulated fur leader peptide ATACGCATTATCTC 4 6 -699578 -29 CDS b0675 UMP phosphatase CTTATTGTTGTCAA 4 3 -688559 -323 CDS b0656 IS5 transposase and trans-activator CTTATCGTGCCGGA 4 3 -675831 -61 CDS b0644 conserved protein ACGCAAAAATGGAA 4 5 -664684 -271 CDS b0633 minor lipoprotein ATTCTGCTGATCAT 4 9 -643288 -98 CDS b0610 regulator of nucleoside diphosphate kinase ATCATCATGTGAGT 4 3 -641126 -36 CDS b0607 universal stress protein UP12 GAATGATTTGTTCA 4 2 -641120 -30 CDS b0607 universal stress protein UP12 TTTGTTCATGATTA 4 7 -621457 -45 CDS b0590 iron-enterobactin transporter subunit ATAAGATCGATAAC 4 2 -606485 121 CDS b0581 gamma-glutamyl:cysteine ligase TTAAAAATAAGATC 4 3 -604676 -29 CDS b0578 dihydropteridine reductase, NAD(P)H-dependent, oxygen-insensitive ACGCAAAATTACTT 4 4 -603879 7 CDS b0577 predicted mechanosensitive channel ATTTAATATCCCAG 4 4 -584887 -31 CDS b0565 DLP12 prophage 3B outer membrane protease VII (outer membrane AATCATTAAAACGA 4 1 protein 3b) -576093 -45 gene b0553 pseudogene GCAGTGACATCATT 4 8 -567403 -1804 gene b0539 pseudogene CACTCCTTAAAAAT 4 9 -517583 -80 CDS b0492 predicted thioredoxin domain-containing protein ACAAAATATTGCAG 4 2 -490112 -76 CDS b0467 primosomal replication protein N GTTGCATATTGAGT 4 5 -484959 -116 CDS b0463 multidrug efflux system ATTTACATACATTT 4 8 -466570 -34 CDS b0445 predicted transporter subunit: periplasmic-binding component of ABC AGTGAATAGTTAAA 4 5 superfamily -464796 -25 CDS b0444 predicted aluminum resistance protein TTTTATTGTTCAAG 4 4 -440597 -30 CDS b0422 exonuclease VII small subunit GCGAAAAATATTGA 4 4 -437508 -149 CDS b0419 2-carboxybenzaldehyde reductase, function unknown ATTATTCATAGACT 4 9 -409274 -31 CDS b0393 DNA-binding protein, non-specific TAAATTTAACGACA 4 1 -404910 -42 CDS b0386 pyrroline-5-carboxylate reductase, NAD(P)-binding AGCGATTATCAAAA 4 4 -404905 -37 CDS b0386 pyrroline-5-carboxylate reductase, NAD(P)-binding TTATCAAAACAATG 4 8 -402928 1940 CDS b0386 pyrroline-5-carboxylate reductase, NAD(P)-binding ATTCAGAAACAATT 4 8 -402878 1990 CDS b0386 pyrroline-5-carboxylate reductase, NAD(P)-binding ATGATATTTCGGGT 4 3 -384055 -215 CDS b0364 conserved protein AAAACAAAATAACT 4 5 -379124 -19 CDS b0357 regulator protein that represses frmRAB operon GCAGATGATGAGGT 4 4 -367754 -110 CDS b0346 DNA-binding transcriptional activator, 3HPP-binding TTTTTTATTGTGCG 4 6 -333688 -31 CDS b0316 predicted DNA-bindng transcriptional regulator ATTCATAGTAGATA 4 4 -312456 10 CDS b4671 expressed protein ATAAAGTACAGCAA 4 2 -312027 -26 CDS b0296 rpmJ (L36) paralog ATGTTATAACATAA 4 7 -305654 387 CDS b0290 predicted receptor AGTCTTATCCTGCC 4 6 -303438 -32 CDS b0288 predicted ferredoxin CTCTTTACGATTTT 4 6 -279354 232 CDS b4505 pseudogene ACATATTAAAAAAA 4 2 -236044 -42 CDS b0214 HI, degrades RNA of DNA-RNA hybrids GTCGTTTTACAGTT 4 8 -230906 -25 CDS b0208 predicted DNA-binding transcriptional regulator CTTCTATTTTGCAA 4 5 -220022 -27 CDS b0196 predicted outer membrane protein, signal GTTTTGATCATACA 4 6 -160760 -156 CDS b0145 DNA-binding transcriptional regulator of rRNA transcription, DnaK TTACATTCTGGTCG 4 2 suppressor protein -159171 -45 CDS b0143 poly(A) polymerase I CTATTTTTTTGTCC 4 2 -142703 -33 CDS b0126 carbonic anhydrase ACGTAATTATTTGG 4 5 -136550 -86 CDS b0121 spermidine synthase (putrescine aminopropyltransferase) GAAATATTGACCGT 4 3 -63468 -204 CDS b0059 RNA polymerase-associated helicase protein (ATPase and RNA TTTTGCTACACTTA 4 7 polymerase recycling factor) -55387 -685 CDS b0053 peptidyl-prolyl cis-trans isomerase (PPIase) TTTAATATTTCCGT 4 3 -52084 346 CDS b0051 S-adenosylmethionine-6-N ,N -adenosyl (rRNA) dimethyltransferase ATAACATCTCCACG 4 2 -36358 -196 CDS b0036 crotonobetainyl CoA hydratase GAAATTTAAAGTGC 4 7 -20599 -91 CDS b0022 KpLE2 phage-like element 3B IS1 repressor protein InsA ACAAAGAATATGGA 4 4 -17146 -186 CDS b0018 regulatory protein for HokC, overlaps CDS of hokC ATCATTAAAAAATT 4 8 -6482 -23 CDS b0006 conserved protein TAAATTTCCTGCAA 4 1 163 -27 CDS b0001 thr operon leader peptide ATAAAAATTACAGA 4 3 12123 -40 CDS b0014 chaperone Hsp70, co-chaperone with DnaJ ACAACCACATGATG 4 8 28289 -85 CDS b0031 dihydrodipicolinate reductase AATTATCAGCGTTT 4 1 29620 -31 CDS b0032 carbamoyl phosphate synthetase small subunit, glutamine TAAAGTGAGTGAAT 4 1 amidotransferase 29632 -19 CDS b0032 carbamoyl phosphate synthetase small subunit, glutamine ATATTCTCTGGAGG 4 2 amidotransferase 34226 -74 CDS b0034 DNA-binding transcriptional activator TTTTAATATGGCCT 4 4 49788 -35 CDS b0048 dihydrofolate reductase ATAGTGGCGACAAT 4 9 57259 -105 CDS b0055 DnaJ-like protein, membrane anchored AAATTATAGGCGAT 4 2 84298 -70 CDS b0076 DNA-binding transcriptional activator ATATTCTTCAGGAT 4 2 84307 -61 CDS b0076 DNA-binding transcriptional activator AGGATTATTTCTCT 4 3 91028 -4 CDS b0083 membrane bound cell division protein at septum containing leucine ATGCATGATCAGCA 4 4 zipper motif 102763 -392 CDS b0093 membrane anchored protein involved in growth of wall at septum ATTGATTGAAAAAT 4 9 108119 -160 CDS b0098 preprotein subunit, ATPase ATTGATTATGCGCA 4 4 141407 -24 CDS b0125 hypoxanthine phosphoribosyltransferase TTTTTAAATCATAT 4 7 162077 -28 CDS b0148 predicted ATP-dependent helicase GAAGAATGTTAACC 4 2 164658 -72 CDS b0149 fused glycosyl transferase and transpeptidase ATATCTTCTTCTGT 4 2 179264 27 CDS b0160 deoxyguanosine triphosphate triphosphohydrolase ATAAACTGGCATCG 4 2 186142 -3570 NC Novel sRNA, function unknown CGGCAAAAATTTTC 4 5 189866 -8 CDS b0169 30S ribosomal subunit protein S2 TTTTAATCATGGCA 4 5 191754 -101 CDS b0171 uridylate kinase CTTGTAAATTCAGC 4 5 200299 -183 CDS b0178 periplasmic chaperone TCAAAAAGTACGAT 4 9 200305 -177 CDS b0178 periplasmic chaperone AGTACGATGGAGAC 4 3 229134 -33 CDS b0207 2,5-diketo-D-gluconate reductase B AGTTAACGAAAATA 4 8 240333 -10 CDS b0220 inhibitor of vertebrate C-lysozyme GGTTAATAACATGG 4 7 243512 -31 CDS b0222 D-sedoheptulose 7-phosphate isomerase GTCTATTACATTTA 4 7 243522 -21 CDS b0222 D-sedoheptulose 7-phosphate isomerase TTTATGCTGAAGGA 4 3 251969 -36 CDS b0232 predicted antitoxin of the YafO-YafN toxin-antitoxin system ATATTCTGGTGTGC 4 2 255918 -59 CDS b0238 guanine-hypoxanthine phosphoribosyltransferase AACCTATTTTCCCC 4 5 256502 -25 CDS b0239 hydrolase, binds to enzyme IIA(Glc) AGTAAGTATTCTGG 4 7 302181 -34 CDS b0287 conserved inner membrane protein AGGTGTATAACATA 4 8 319342 -109 CDS b0305 predicted DNA-binding transcriptional regulator TTAATCAGAATCAC 4 6 331470 -125 CDS b0315 predicted DNA-binding transcriptional regulator CTTGATAGTGATGT 4 4 344602 -26 CDS b0327 predicted protein TGTATGGTACGGGG 4 3 367744 -91 CDS b0347 3-(3-hydroxyphenyl)propionate hydroxylase ACAATAAAAAATCA 4 7 375966 -30 CDS b0354 nucleoprotein/polynucleotide-associated enzyme AAAAATTATTCAGC 4 1 402912 -15 CDS b0385 predicted diguanylate cyclase GAAAATTGTTTCTG 4 1 405456 -173 CDS b0388 shikimate kinase II ATTATTTACACTTC 4 7 409344 -24 CDS b0394 manno(fructo)kinase ATTGAAAAAAATAA 4 7 424209 -26 CDS b0405 S-adenosylmethionine:tRNA ribosyltransferase-isomerase CTCTTATTTTAGTC 4 5 426882 11 CDS b0408 SecYEG protein translocase auxillary subunit TTATCCTTTGTGGA 4 2 437492 1679 CDS b0418 phosphatidylglycerophosphatase A TAGAGTCTATGAAT 4 1 443882 -25 CDS b0426 predicted nucleotide binding protein ATCAAAAATGAAGG 4 4 458090 -22 CDS b0439 DNA-binding ATP-dependent protease La AATTAAACTAAGAG 4 4 459330 1218 CDS b0439 DNA-binding ATP-dependent protease La ATCCAGAAAATGGC 4 6 467581 -26 CDS b0447 predicted DNA-binding transcriptional regulator AGAAAAAAATTCTC 4 5 472073 -117 CDS b0451 ammonium transporter AAAAATTGGCGACG 4 1 474530 -73 CDS b0453 predicted outer membrane lipoprotein GTTACTATTTTGTT 4 3 510797 -68 CDS b0485 GGATGCCTGAAAAT 4 9 515116 -27 CDS b0490 predicted transporter subunit: ATP-binding component of ABC AGTAAAAATCAGAA 4 4 superfamily 534032 892 CDS b0507 glyoxylate carboligase TCGTTCATATTGAT 4 6 579059 -44 CDS b0559 DLP12 prophage 3B predicted protein ATATTTTAACCGCT 4 2 580819 242 gene b4634 pseudogene TTATTCCAAAATGC 4 7 621481 -42 CDS b0591 predicted transporter CTAAGAATAGGTAT 4 3 621483 -40 CDS b0591 predicted transporter AAGAATAGGTATTT 4 1 624054 -54 CDS b0593 isochorismate synthase 1 GAAAATATAAATGA 4 1 629079 -38 CDS b0598 carbon starvation protein ATGTAACATCTCTA 4 4 651740 282 CDS b0619 sensory histidine kinase in two-component regulatory system with TTTGATTATGTGGT 4 4 citB 655710 -70 CDS b0622 palmitoyl transferase for Lipid A ATTAAGGTTATGTT 4 9 702830 -337 CDS b0679 fused N-acetyl glucosamine specific PTS enzyme: IIC, IIB , and IIA CTCATTATTCACCT 4 3 components 703063 -104 CDS b0679 fused N-acetyl glucosamine specific PTS enzyme: IIC, IIB , and IIA AGATGATCTAACAA 4 2 components 705222 -94 CDS b0680 glutamyl-tRNA synthetase AGATTATCAATTTT 4 2 728572 215 CDS b0699 predicted protein TTTTGAATACATTG 4 8 733048 49 CDS b0702 predicted inner membrane protein TTTTAATACTATTC 4 5 742021 -29 CDS b0710 conserved metal-binding protein GTAGCTATCAGAAT 4 9 770474 -207 CDS b0733 cytochrome d terminal oxidase, subunit I TTTATTGTAAGGAT 4 3 770523 -158 CDS b0733 cytochrome d terminal oxidase, subunit I TTTTTATTAACATG 4 8 776892 -71 CDS b0740 periplasmic protein TTTTGTGTATTTTA 4 8 776907 -56 CDS b0740 periplasmic protein TTTGTTAACATTCT 4 6 784821 -35 CDS b0754 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine TTCACTAAGATAAG 4 6 repressible 784826 -30 CDS b0754 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine TAAGATAAGTATGG 4 1 repressible 797668 -141 CDS b0767 6-phosphogluconolactonase TTAAGGTTAAGAAT 4 9 797674 -135 CDS b0767 6-phosphogluconolactonase TTAAGAATTTTCGT 4 3 817235 -43 CDS b0782 molybdopterin biosynthesis protein B CTTATCGTACATTG 4 3 819081 -26 CDS b0786 predicted inner membrane protein ATTCCTTATATCTT 4 9 823826 -27 CDS b0791 predicted inner membrane protein AGAGATAAATTCTT 4 6 832266 -27 CDS b0799 ATP-dependent DNA helicase TGTTTATACAGTAT 4 7 841479 -76 CDS b0807 23S rRNA mA1618 methyltransferase, SAM-dependent GAATGATAAACGCA 4 2 841538 -17 CDS b0807 23S rRNA mA1618 methyltransferase, SAM-dependent GCTTAAAGGAGAAT 4 9 872170 -32 CDS b0833 conserved inner membrane protein GTTCAGATAGTTAT 4 6 872180 -22 CDS b0833 conserved inner membrane protein TTATTTTGTTAAAT 4 2 882793 -103 CDS b0842 multidrug efflux system protein AATGTAAGAATGTG 4 6 890086 -50 CDS b0850 predicted inner membrane protein AATACAGTGAAAAG 4 3 891082 -108 CDS b0852 ribosomal protein S6 modification protein CCATTTATTCTGGA 4 6 903740 -76 CDS b0866 conserved protein GATATCCTTTCAAT 4 3 913951 -1745 CDS b0876 conserved protein with nucleoside triphosphate hydrolase domain TAAAAAAGAGAATA 4 8 918360 -98 CDS b0878 macrolide transporter subunit, membrane fusion protein (MFP) ACATCAATAGTGTG 4 6 component 918396 -62 CDS b0878 macrolide transporter subunit, membrane fusion protein (MFP) TTTTGTTGATATTT 4 8 component 932404 -43 CDS b0890 DNA-binding membrane protein required for chromosome resolution and TTTAGCATCGGGCA 4 3 partitioning 940046 -136 CDS b0894 dimethyl sulfoxide reductase, anaerobic, subunit A GAGTGAAAATCTAC 4 5 959494 7 CDS b0909 predicted peptidase with chaperone function ATACTAAATTACTG 4 5 960386 -38 CDS b0910 cytidylate kinase GGTTATGTTAACGG 4 4 985190 2317 CDS b0927 predicted metal-binding enzyme TGGTTGATGATGTA 4 6 1031208 -154 CDS b0972 hydrogenase 1, small subunit AATACTTTCTGGCG 4 1 1036930 -33 CDS b0978 cytochrome bd-II oxidase, subunit I GTTATTTTTCTCTC 4 3 1078447 -81 CDS b1015 proline:sodium symporter ATAAACTCTGTTAC 4 2 1097049 -60 CDS b1033 2-ketoacid reductase CTTTGTAGATCATA 4 8 1099405 -114 CDS b1036 predicted inner membrane protein TTCTGAAGAATAAG 4 6 1115959 -71 CDS b1055 conserved protein ATGTTAATTATCGA 4 6 1145813 1 NC ncRNA 15 SraB AGGCATATTTTTTT 4 4 1150783 -55 CDS b1094 acyl carrier protein (ACP) TTTATACACTACGA 4 5 1154242 -105 CDS b1098 thymidylate kinase ATCTCTATTTTGTG 4 6 1156852 -240 CDS b1101 fused glucose-specific PTS : IIB component/IIC component GAAAATTGGGCGGT 4 1 1156971 -121 CDS b1101 fused glucose-specific PTS enzymes: IIB component/IIC component ATTATTTTACTCTG 4 3 1165249 -59 CDS b1109 respiratory NADH dehydrogenase 2/cupric reductase TAAGAGCTATGTTA 4 8 1165275 -33 CDS b1109 respiratory NADH dehydrogenase 2/cupric reductase TAACAATTGGTTAA 4 2 1197892 -26 CDS b1139 e14 prophage 3B cell death peptidase, inhibitor of T4 late gene CCCAACAATGTAGA 4 4 expression 1202232 -15 CDS b1146 e14 prophage 3B predicted DNA-binding transcriptional regulator GGAGGTACATATTG 4 8 1209545 -24 CDS b1159 e14 prophage 3B 5-methylcytosine-specific restriction B AAAAATTGATTAAA 4 1 1214975 -37 CDS b1164 predicted protein ACTTAACATTGATT 4 4 1250212 -77 CDS b1201 predicted DNA-binding transcriptional regulator, dihydroxyacetone TCCATATTGAAACT 4 3 1271647 -83 CDS b1218 regulatory protein for cation transport AGTGGTTTCAAAAT 4 9 1271652 -78 CDS b1218 regulatory protein for cation transport TTTCAAAATGAGCA 4 4 1272970 -37 CDS b1220 predicted invasin CTATGGTTTTTCAT 4 2 1272976 -31 CDS b1220 predicted invasin TTTTTCATTATTAC 4 6 1290557 -123 CDS b1236 glucose-1-phosphate uridylyltransferase ATTGTCTTAATTAT 4 9 1290562 -118 CDS b1236 glucose-1-phosphate uridylyltransferase CTTAATTATGCTAA 4 4 1290568 -112 CDS b1236 glucose-1-phosphate uridylyltransferase TATGCTAACTCGCC 4 1 1297634 -187 CDS b1242 predicted inner membrane protein AGTTAATAAATTGT 4 7 1299100 -106 CDS b1243 oligopeptide transporter subunit TAAAGTAACCTGAC 4 1 1321212 -32 CDS b1266 conserved protein GCAAAAAACATTAT 4 9 1324784 -92 CDS b1269 23S rRNA pseudouridylate synthase CTTTACTATCAGTG 4 4 1366062 -41 CDS b1304 regulatory protein for phage-shock-protein operon AGCAGGACAATCCT 4 6 1382094 -47 CDS b1321 conserved protein with nucleoside triphosphate hydrolase domain CTTACGAATGATTT 4 7 1390986 -265 CDS b1329 murein tripeptide (L-ala-gamma-D-glutamyl-meso-DAP) transporter TTTTTATTCTTCGT 4 5 subunit 1416670 -25 CDS b1353 Rac prophage 3B phage superinfection exclusion protein ACCCTTACAGTTGA 4 6 1421735 -71 CDS b1363 Rac prophage 3B potassium transporter subunit AGGAGTTAAATTTT 4 7 1443593 -118 CDS b1382 predicted lipoprotein ATATTTTTACGCTG 4 2 1461534 -29 CDS b1399 DNA-binding transcriptional repressor of phenylacetic acid ATCACAACAATAAC 4 6 degradation, aryl-CoA responsive 1465893 2477 gene b1405 pseudogene GCAGGATATTGACA 4 5 1467293 28 gene b1405 pseudogene GGTGCGAAAATTGT 4 6 1485228 -31 CDS b1414 conserved protein AGTATTCTTAAGGG 4 3 1488899 -27 CDS b1418 cytochrome b561 GAAAATTATGTTAA 4 1 1493185 -127 CDS b1423 conserved protein CAATTATGTTACAG 4 2 1504343 147 CDS b1434 predicted DNA-binding transcriptional regulator GCGACATTATGGAA 4 5 1509620 -58 CDS b1440 predicted spermidine/putrescine transporter subunit AGGAGATATTTTTA 4 5 1515636 -36 CDS b1446 predicted protein GAATCGATAAATTT 4 8 1518295 9 CDS b1450 predicted DNA-binding transcriptional regulator ACGGGAAAAATGAA 4 6 1590454 -9060 CDS b1513 fused AI2 transporter subunits of ABC superfamily: ATP-binding GAAAGCTCATCATG 4 8 components 1620611 -59 CDS b4599 hypothetical protein ATTGAGATGAAAAT 4 9 1622714 -83 CDS b1537 conserved protein TTATATGTTTGAAA 4 4 1630662 -401 CDS b1544 Qin prophage 3B predicted DNA-binding transcriptional regulator CCTTGATATTTTTC 4 5 1653808 -24 CDS b1583 predicted protein AATCATTCATACAG 4 1 1655563 -26 CDS b1586 predicted protein AGTTATCTTCGCGT 4 4 1676402 -49 CDS b1604 predicted protein TTAATAACAATACC 4 6 1702879 -94 CDS b1625 predicted regulator ATTATTGTAATAAC 4 3 1710713 -80 CDS b1634 predicted transporter ATAACAATTGCGCG 4 3 1717794 -106 CDS b1641 outer membrane lipoprotein TTTGCTCATATTTG 4 7 1717893 -7 CDS b1641 outer membrane lipoprotein TTTTTCAATGATTA 4 7 1724064 17 CDS b1649 predicted DNA-binding transcriptional regulator ACATGATACTCGCG 4 2 1733349 -53 CDS b1656 superoxide dismutase, Fe ACGCACAATAAGGC 4 4 1733362 -40 CDS b1656 superoxide dismutase, Fe CTATTGTACGTATG 4 2 1735712 -156 CDS b1658 DNA-binding transcriptional repressor, hypoxanthine-binding TTACACTATTTGCG 4 2 1739338 -99 CDS b1661 cyclopropane fatty acyl phospholipid synthase (unsaturated- ATTATAGACTCGCG 4 5 phospholipid methyltransferase) 1745115 -40 CDS b1668 conserved protein with FAD/NAD(P)-binding domain ATAACACTAAATTC 4 8 1772646 -64 CDS b1693 3-dehydroquinate dehydratase ATATGTTAAACAGG 4 2 1785439 -30 CDS b1703 conserved protein GAATTATGTCTGCA 4 2 1807348 -56 CDS b1727 predicted hydrolase TTAATCATAAGCAC 4 3 1808938 -20 CDS b1729 predicted transporter ATAAGATCAGGAGA 4 2 1840356 -39 CDS b1761 glutamate dehydrogenase, NADP-specific ATAAGCACAATCGT 4 6 1840370 -25 CDS b1761 glutamate dehydrogenase, NADP-specific ATTAATATATAAGG 4 3 1873676 -21 CDS b1791 predicted transporter GTTTGTAACAATGA 4 7 1891360 -31 CDS b1809 conserved protein ACGAAAATGGAAGT 4 3 1892781 -48 CDS b1812 aminodeoxychorismate synthase, subunit I GCTAATTATTTCAT 4 4 1915436 -98 CDS b1834 conserved protein TTTTACTATGGGAC 4 4 1923112 -20 CDS b1842 DNA polymerase III, theta subunit GAATGATGAGGAGA 4 2 1984821 -128 CDS b1902 predicted ferritin-like protein AGATCATCGTCAGA 4 2 2021861 -131 CDS b1951 DNA-binding transcriptional activator, co-regulator with RcsB CTTTACGGGATAGT 4 9 2032159 84 gene b1966 pseudogene GGTAATAAACTGGA 4 6 2033785 -74 CDS b1967 Hsp31 molecular chaperone CTGGTTAAAAATAG 4 7 2033789 -70 CDS b1967 Hsp31 molecular chaperone TTAAAAATAGCGAC 4 3 2039362 -37 CDS b1973 conserved metal-binding protein TTACACATCATATA 4 6 2039368 -31 CDS b1973 conserved metal-binding protein ATCATATACATTAA 4 7 2039374 -25 CDS b1973 conserved metal-binding protein TACATTAACTCTGG 4 1 2054850 -32 CDS b1983 conserved protein AATGTAAATAAATT 4 9 2069348 9 NC ncRNA 39 IS102 ATCTATTTTATCGA 4 4 2094579 -59 CDS b2026 fused phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP ATAATCAATATTGG 4 7 pyrophosphatase 2141248 -42 CDS b2067 predicted diguanylate cyclase, GGDEF domain signalling protein AGAAACGAATACTG 4 8 2163618 -74 CDS b2081 predicted peptidase CTTAAAGTGGGGGC 4 3 2166709 -27 CDS b2086 phosphatidylglycerol kinase, metal-dependent AGACCAATCATAAA 4 6 2184884 -98 CDS b2107 predicted protein GAAATCATGGGATC 4 3 2213656 -23 CDS b4542 predicted protein TTCGTTAACATAAG 4 6 2220176 -31 CDS b2133 D-lactate dehydrogenase, FAD-binding, NADH independent GATATTTTTTCGCC 4 1 2229842 -24 CDS b2143 cytidine/deoxycytidine deaminase ATTACATGATTATG 4 5 2263437 -35 CDS b2171 predicted elongtion factor ATATTTTTGACATT 4 2 2268700 -48 CDS b2176 conserved protein ATTGTTATCTTTTA 4 6 2270390 4 CDS b2177 predicted oligopeptide transporter subunit TTGTGCGCATACTG 4 8 2273178 -117 CDS b2179 predicted oligopeptide transporter subunit TTATCCTGTAATGT 4 2 2288444 -78 CDS b2193 DNA-binding response regulator in two-component regulatory system GTAACATTCACGCG 4 2 with NarQ or NarX 2363738 -212 CDS b2253 uridine 5 -(beta-1-threo-pentapyranosyl-4-ulose diphosphate) CCTACGATGTCGGC 4 3 aminotransferase, PLP-dependent 2367286 -754 CDS b2256 conserved protein ATTTTGAAGAGAAT 4 9 2379604 -26 CDS b2268 binuclear zinc AATATTTTTTGAAA 4 1 2406858 -26 CDS b2291 deoxyribonucleoside 5 -monophosphatase ATGATGTCATCATA 4 8 2411366 -126 CDS b2296 acetate kinase A and propionate kinase 2 ATTTCTTCCATCAT 4 9 2418614 -29 CDS b2302 predicted glutathione S-transferase GTTCAGATGATTAA 4 6 2446603 -25 CDS b2331 conserved protein GAAAATTAGAAATA 4 1 2465852 -25 CDS b2350 CPS-53 (KpLE1) prophage 3B bactoprenol-linked glucose translocase CTTTGATTATTAGC 4 5 (flippase) 2467055 -98 CDS b2352 CPS-53 (KpLE1) prophage 3B predicted inner membrane protein ATTCAGATGATTGG 4 6 2477127 -97 CDS b2366 D-serine ammonia-lyase TTAAATACTATACG 4 4 2477132 -92 CDS b2366 D-serine ammonia-lyase TACTATACGACAGC 4 1 2481663 -114 CDS b2369 DNA-binding response regulator in two-component regulatory system ATTATCTTAAAGGA 4 3 with EvgS 2516468 -21 CDS b2398 predicted DNA-binding transcriptional regulator ATTGTTATGTTCAA 4 6 2524948 -20 CDS b2410 predicted inner membrane protein ATCGATCATCTGGA 4 4 2530408 -23 CDS b2414 cysteine synthase A, O-acetylserine sulfhydrolase A subunit TTTCATACAGTTAA 4 6 2531523 -263 CDS b2415 phosphohistidinoprotein-hexose phosphotransferase component of PTS AATTATTTTGATGC 4 1 system (Hpr) 2531713 -73 CDS b2415 phosphohistidinoprotein-hexose phosphotransferase component of PTS ATACAGGCTAAAGT 4 9 system (Hpr) 2543753 -42 CDS b2428 predicted PTS component ACATCTGCAATTAT 4 9 2589198 -71 CDS b2471 conserved protein AATCATTTGCAGGC 4 1 2594784 -3144 CDS b2479 DNA-binding transcriptional repressor, regulatory protein accessory ATAGAAATGATCGT 4 6 to GcvA 2598459 -41 CDS b2480 thiol peroxidase, thioredoxin-dependent GTCAATTATTCCCA 4 4 2598466 -34 CDS b2480 thiol peroxidase, thioredoxin-dependent ATTCCCAACATGAT 4 9 2619175 -44 CDS b2499 phosphoribosylaminoimidazole synthetase GAATTTTATTTTTC 4 7 2620980 -86 CDS b2501 polyphosphate kinase, component of RNA degradosome TTTTCTGGCATAGT 4 9 2626040 -1272 CDS b2504 predicted protein AAAAGAGAATACCA 4 5 2661437 -27 CDS b2533 inositol monophosphatase TTCTTTAACATCCA 4 6 2667041 -13 CDS b2538 3-phenylpropionate dioxygenase, large (alpha) subunit AGGATTAAAAAATA 4 8 2671343 -25 CDS b2543 predicted inner membrane protein ACATTATCTTGCAA 4 2 2682044 1159 CDS b2550 predicted DNA-binding transcriptional regulator ATTTGTATGTTGAG 4 6 2683831 -26 CDS b2552 fused nitric oxide dioxygenase/dihydropteridine reductase 2 TTAAGATGCAAAAA 4 2 2734135 -33 CDS b2595 predicted lipoprotein CCCGTATTACATTT 4 8 2739846 -51 CDS b2603 predicted protein ATTCTGAAAAAATA 4 8 2751542 -85 CDS b2617 small membrane lipoprotein TTTTAAAGTGATGA 4 4 2752896 -22 CDS b2620 trans-translation protein TTACCGATGATTCA 4 6 2763238 -702 CDS b2630 CP4-57 prophage 3B RNase LS ACTGCATCATCACC 4 5 2763916 -24 CDS b2630 CP4-57 prophage 3B RNase LS ATATGTTTCTATGG 4 2 2795209 -24 CDS b2667 predicted DNA-binding transcriptional regulator AATTTAGAAAATAC 4 7 2797144 -42 CDS b2670 predicted inner membrane protein CTCCATTAACATCC 4 7 2802587 -250 CDS b2677 glycine betaine transporter subunit GTTGCATTATTCGC 4 5 2808717 -75 CDS b2684 DNA-binding transcriptional repressor of microcin B17 synthesis and TTTCTAAAACAATA 4 8 multidrug efflux 2808755 -37 CDS b2684 DNA-binding transcriptional repressor of microcin B17 synthesis and TTACTATATCGGCT 4 2 multidrug efflux 2809360 -89 CDS b2685 multidrug efflux system AAAAATGACTGGCC 4 1 2823750 -104 CDS b2702 glucitol/sorbitol-specific enzyme IIC component of PTS TTTATCTTTCATTT 4 3 2826984 -85 CDS b2707 DNA-bindng transcriptional repressor TAAACTGAAACGTG 4 1 2855085 -30 CDS b2733 methyl-directed mismatch repair protein ATTTAATATCAGGG 4 4 2859414 -38 CDS b2736 predicted dehydrogenase, with NAD(P)-binding Rossmann-fold domain ATCAAACAAAATAT 4 7 2874569 -34 CDS b2753 aminopeptidase in alkaline phosphatase isozyme conversion GTAAAAAAATTTGC 4 5 2890212 -24 CDS b2765 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) GTTTTATCGTCCTG 4 5 2936671 -239 CDS b2804 L-fucose mutarotase ATTATTGTTAGTCG 4 3 2947241 -23 CDS b2818 fused acetylglutamate kinase homolog (inactive)/amino acid N- ATAATCATGCAAAG 4 3 acetyltransferase 3023691 -97 CDS b2883 TTTTATTAAATATT 4 9 3031063 -24 CDS b2889 isopentenyl diphosphate isomerase GATCAGAATTACAT 4 4 3041661 -23 CDS b2901 6-phospho-beta-glucosidase A AAGAATTGACTCAT 4 1 3053996 -9 NC 6S sRNA GAAGACAAAATTTC 4 6 3084711 -17 CDS b2942 methionine adenosyltransferase 1 TTTAGGTGATATTA 4 8 3086277 -29 CDS b2943 D-galactose transporter AATAAAAAATAACC 4 5 3093082 -38 CDS b2951 predicted enzyme CACAATTTCTTCCA 4 1 3107546 -29 CDS b2966 predicted inner membrane protein ATCAAACAATACAG 4 5 3178779 336 CDS b3038 predicted enzyme CTTCTGGAAAATAA 4 7 3184102 19 gene b3046 pseudogene GTTCATTATCCGTT 4 4 3210710 -359 CDS b3067 RNA polymerase, sigma 70 (sigma D) factor AAGAATATTGCTGA 4 1 3210963 -106 CDS b3067 RNA polymerase, sigma 70 (sigma D) factor ATTATCGTTGGCGG 4 3 3297963 -25 CDS b3155 predicted endonuclease CTGACCTTAACATG 4 8 3299461 -46 CDS b3158 predicted peptidase (collagenase-like) TCGTTAACATTTTT 4 5 3316582 -77 CDS b3172 argininosuccinate synthetase TCATTTATTTTGCA 4 6 3316589 -70 CDS b3172 argininosuccinate synthetase TTTTGCATAAAAAT 4 9 3331736 4 CDS b3187 octaprenyl diphosphate synthase ATTTAGAAAAAATC 4 8 3340285 -10 CDS b3198 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase ATAAACAACAATGA 4 7 3346447 -27 CDS b3207 predicted protein CGTCAGAAAATATT 4 6 3359153 -45 CDS b3214 periplasmic protein GCTTTTTATTTTAA 4 7 3359163 -35 CDS b3214 periplasmic protein TTAAAAAATAAATT 4 4 3382622 -103 CDS b3237 DNA-binding transcriptional dual regulator, L-arginine-binding CTCTTTCATAACAT 4 9 3401475 -31 CDS b3253 predicted oxidoreductase, Zn-dependent and NAD(P)-binding TTCCAATCCATCAT 4 9 3417074 10 gene b3268 pseudogene TGATGATAGCCACA 4 2 3427233 -25 CDS b3279 conserved protein TAAATCATTTATTG 4 3 3479280 -31 CDS b3352 fused predicted transporter subunits of ABC superfamily: ATP-binding AAGTTAACATAGTC 4 5 components 3483975 -167 CDS b3357 DNA-binding transcriptional dual regulator GATGCTACAGTAAT 4 6 3483987 -155 CDS b3357 DNA-binding transcriptional dual regulator ATACATTGATGTAC 4 2 3497436 -34 CDS b3369 conserved secreted peptide ATATTAATTAATAT 4 9 3497478 8 CDS b3369 conserved secreted peptide ATTTATTAAAGTTG 4 7 3530813 -27 CDS b3403 phosphoenolpyruvate carboxykinase AATACATATTGGCT 4 5 3538080 -105 CDS b3408 ferrous iron transporter, protein A GTTGATTATTTAAT 4 4 3543480 -166 CDS b3414 predicted gluconate transport associated protein GTGGATGATGTCGT 4 4 3581412 351 gene b3443 pseudogene GGGGATTATAGCAT 4 4 3582633 -149 CDS b3446 predicted protein AGATACTTATTTCG 4 2 3584943 -23 CDS b3448 conserved protein ATATCTTCAGAGGA 4 2 3617209 -6 CDS b3482 rhsB element core protein RshB TTTACGATGAGCGG 4 3 3646086 -465 CDS b3501 DNA-binding transcriptional repressor TTAGATGATGGCTA 4 4 3646533 -18 CDS b3501 DNA-binding transcriptional repressor AACAATCAGGAGCG 4 1 3651959 -25 CDS b3506 outer membrane lipoprotein AATATTTGTTGATA 4 1 3655034 16 CDS b3511 acid-resistance membrane protein AGGCAACAATTTTG 4 5 3656297 -92 CDS b3512 DNA-binding transcriptional activator AGGCGTTTACTATA 4 8 3670379 -58 CDS b3521 predicted DNA-binding transcriptional regulator AATAAACAATGCGA 4 5 3694466 -15 CDS b3536 conserved protein AGACAAAATGGTGA 4 4 3698161 2 NC antisense sRNA RdlD CTAGAGTCAAGATT 4 2 3718397 -306 CDS b3557 IS150 protein InsA GAAGAATAAATTTG 4 2 3735030 -490 CDS b3571 alpha-amylase ATTGCGAGAATACT 4 6 3735218 -302 CDS b3571 alpha-amylase TTTAATCATTCCAA 4 4 3740696 -60 CDS b3575 2,3-diketo-L-gulonate dehydrogenase, NADH-dependent AAGTTTCGCATATT 4 9 3772439 -8 CDS b3600 mannitol-1-phosphate dehydrogenase, NAD(P)-binding TTAATACTATGAAA 4 3 3774659 -29 CDS b3602 conserved protein ATAAATTTATCTTT 4 2 3779202 -36 CDS b3606 predicted rRNA methylase TTTTCTGCTATCCT 4 9 3842154 167 CDS b3665 cryptic adenine deaminase ACGTTACATTGCCG 4 5 3865466 -285 CDS b3688 conserved outer membrane protein AGCGAGAATGTAAG 4 4 3886568 110 CDS b3707 tryptophanase leader peptide ATTAGATTCAATGT 4 3 3890742 -46 CDS b3711 predicted DNA-binding transcriptional regulator CTGTTGCTGATTAT 4 9 3891852 -52 CDS b3712 predicted phosphopantetheinyl transferase AGTAAATGATTACT 4 5 3939830 -1 rRNA b3756 16S ribosomal RNA of rrnC operon TAAATTGAAGAGTT 4 1 3946081 -28 CDS b3764 conserved protein CTCGGTCAAAGAAT 4 9 3963673 -111 CDS b3781 thioredoxin 1 TTACTATTGCTTTA 4 2 3963702 -82 CDS b3781 thioredoxin 1 TGAAATAAAGTCAA 4 6 4002838 -47 CDS b3821 outer membrane phospholipase A AGAAAAATATTCAC 4 3 4010939 -137 CDS b3829 5-methyltetrahydropteroyltriglutamate-homocysteine S- CTTTTAAATTTATG 4 5 methyltransferase 4010946 -130 CDS b3829 5-methyltetrahydropteroyltriglutamate-homocysteine S- ATTTATGGTGCGTT 4 4 methyltransferase 4011033 -43 CDS b3829 5-methyltetrahydropteroyltriglutamate-homocysteine S- ATTCAAAATCCATA 4 4 methyltransferase 4011040 -36 CDS b3829 5-methyltetrahydropteroyltriglutamate-homocysteine S- ATCCATAGGATTTA 4 6 methyltransferase 4019932 -36 CDS b3836 TatABCE protein translocation system subunit CTTTGTTTAATCAT 4 9 4056298 -132 CDS b3871 GTP-binding protein TTTTATGCTCCGTG 4 4 4077718 -56 CDS b3890 conserved protein ATAGATTCAAAAAT 4 2 4110750 -240 CDS b3922 conserved protein ATAAAGCCGACAAT 4 9 4116450 -88 CDS b3928 conserved protein AACTAAAGTGCGCT 4 4 4124969 -67 CDS b3936 50S ribosomal subunit protein L31 TTTAACATCGCGTG 4 3 4131817 -41 CDS b3942 catalase/hydroperoxidase HPI(I) CTGTGTATCGTAAC 4 6 4164242 -440 rRNA b3968 16S ribosomal RNA of rrnB operon ACAATTATTGCCCG 4 3 4177902 -117 CDS b3985 50S ribosomal subunit protein L10 ATTATTCTTTTATA 4 3 4231744 -37 CDS b4025 glucosephosphate isomerase CAAAGTCACAATTC 4 7 4231747 -34 CDS b4025 glucosephosphate isomerase AGTCACAATTCTCA 4 4 4231755 -26 CDS b4025 glucosephosphate isomerase TTCTCAAAATCAGA 4 5 4248736 10 gene b4038 pseudogene ATATCCTAAATTCT 4 2 4258190 -154 CDS b4047 predicted protein TTTTTAAATAAATT 4 9 4277939 -64 CDS b4065 predicted cation/proton antiporter AAAAATGAGAATTC 4 1 4292398 -106 CDS b4077 glutamate/aspartate:proton symporter GTTAAAAAAATCTA 4 6 4328375 -150 CDS b4111 proline/glycine betaine transporter TTTGATTGTACATT 4 9 4391699 -390 CDS b4167 predicted kinase GAAACACAATGTTG 4 5 4393183 -425 CDS b4168 ATPase with strong ADP affinity TAAGCGTCACAATC 4 8 4398256 -55 CDS b4172 HF-I, host factor for RNA phage Q beta replication TTTTTTCAGAATCG 4 7 4404175 -38 CDS b4178 predicted DNA-binding transcriptional regulator TAAATGTATTTTTT 4 7 4429034 1147 CDS b4208 D-alanine/D-serine/glycine transporter TTATGTTCGTCTGG 4 2 4440298 -107 CDS b4220 predicted outer membrane protein and surface antigen AAGAAATATTTGGG 4 5 4492620 -26 CDS b4268 D-gluconate kinase, thermosensitive AGGTAAGATGATTC 4 4 4496128 -167 CDS b4272 KpLE2 phage-like element 3B IS2 insertion element repressor InsA ATAAAAAATCCTGT 4 4 4501907 -174 CDS b4279 KpLE2 phage-like element 3B predicted transporter TTTCATAGAGTGAA 4 6 4540073 13 CDS b4313 tyrosine recombinase/inversion of on/off regulator of fimA GTTATCTTACCGGT 4 3 4541107 -31 CDS b4314 major type 1 subunit fimbrin (pilin) TTTAGAAATAGTTT 4 7 4542527 200 CDS b4316 chaperone, periplasmic TTTAATTCAATCAT 4 9 4570222 -215 CDS b4342 pseudogene ATTTATTTTCATTT 4 4 4570406 -31 CDS b4342 pseudogene TTTTGTATCTTTTA 4 6 4603800 -27 CDS b4567 predicted protein ATCATTATCAATGA 4 3 4617590 -36 CDS b4383 phosphopentomutase ATCATTTAAATTTG 4 7 4622879 -39 CDS b4388 3-phosphoserine phosphatase GTTATTTTCCCTGC 4 3 4628733 -23 CDS b4392 lytic murein transglycosylase, soluble ATTTACACTTAGAG 4 4 4631778 -42 CDS b4395 phosphoglyceromutase 2, co-factor independent TACTCAGAAAATTA 4 7 -4638442 -113 CDS b4401 ATTACGTACTTTAG 3 7 -4631795 -27 CDS b4394 thiamin metabolism associated protein ACGTTAATTTTCTG 3 5 -4622833 -21 CDS b4387 conserved protein CAAATTTTCAAAGG 3 1 -4581329 -258 CDS b4349 DNA methylase M TAATCTCGATACCC 3 1 -4569656 -59 CDS b4340 fused predicted DNA-binding transcriptional regulator/predicted TTTTTTAGCCTCAT 3 6 aminotransferase -4566662 -120 CDS b4337 multidrug efflux system protein ATTACATGAAATTC 3 8 -4529709 -35 CDS b4305 KpLE2 phage-like element 3B predicted endoglucanase with Zn- AACGAGTGATTGTT 3 8 dependent exopeptidase domain -4526043 -40 CDS b4302 KpLE2 phage-like element 3B predicted phosphotransferase enzyme IIA GCTACCAGATTAAC 3 6 component -4488106 -20 CDS b4263 predicted ATPase AGGAAACTGGAGGA 3 3 -4484159 -185 CDS b4260 multifunctional aminopeptidase A: a cyteinylglycinase, transcription GTCGAAATCGTCGC 3 6 regulator and site-specific recombination factor -4481950 -90 CDS b4258 valyl-tRNA synthetase TTATGAAGATTCTC 3 5 -4439273 -35 CDS b4218 predicted inner membrane protein CTTCCGAGGATCTG 3 6 -4389612 -80 CDS b4161 ribosome small subunit-dependent GTPase A ATTCACAGTGACTA 3 4 -4388446 -63 CDS b4160 phosphatidylserine decarboxylase TTTTTTCAGGATCC 3 7 -4380421 -80 CDS b4154 fumarate reductase (anaerobic) catalytic and NAD/flavoprotein ATAGCGTTCGCAGA 3 2 subunit -4353810 624 CDS b4130 predicted transporter TTACCAGTATGGAG 3 5 -4349711 -26 CDS b4125 sensory histidine kinase in two-component regulatory system with AAGAAATTTGTCAC 3 3 DcuR, regulator of anaerobic fumarate respiration -4313646 -85 CDS b4093 predicted acyltransferase with acyl-CoA N-acyltransferase domain GATTGCCATACGCT 3 9 -4297441 -52 CDS b4079 formate dehydrogenase-H, selenopolypeptide subunit ATACTGTAGTCGAG 3 2 -4275432 -26 CDS b4062 DNA-binding transcriptional dual regulator ACTGAACACTGAAA 3 5 -4188551 -41 NC ncRNA 81 sroH ATCTGATTGTAAGA 3 5 -4161318 -25 CDS b3965 tRNA m(5)U54 methyltransferase, SAM-dependen GTACTTTAATTTTT 3 2 -4148374 -86 CDS b3955 conserved inner membrane protein TTTATTCAAATTCT 3 7 -4126488 -70 CDS b3938 DNA-binding transcriptional repressor, S-adenosylmethionine-binding TTTACGGTCAGTAC 3 3 -4079351 -100 CDS b3891 formate dehydrogenase formation protein TTACCGCCATGGTG 3 8 -4056109 -52 CDS b3870 glutamine synthetase ATTGCAGATTTCGT 3 5 -4056075 -18 CDS b3870 glutamine synthetase ATCCAGGAGAGTTA 3 7 -4040165 -143 CDS b3857 molybdopterin-guanine dinucleotide synthase AGGTTAAGGTCTGG 3 5 -4010878 -39 CDS b3828 DNA-binding transcriptional activator, homocysteine-binding CTCAAGCGCAAATT 3 9 -3894662 -30 CDS b3714 predicted inner membrane protein GGATTTTCCCTCCT 3 2 -3881901 -149 CDS b3702 chromosomal replication initiator protein DnaA, DNA-binding CCCGATCGTTTTGC 3 4 transcriptional dual regulator -3878175 -33 CDS b3699 DNA gyrase, subunit B ATTAACCCAAGTAT 3 9 -3873209 -26 CDS b3695 predicted DNA-binding transcriptional regulator GAACATACAGAGCA 3 1 -3865000 -80 CDS b3686 heat shock chaperone CTCCATGCTCGCCG 3 4 -3826788 -100 CDS b3653 glutamate transporter AGGAAAGCATAACT 3 5 -3826724 -36 CDS b3653 glutamate transporter AGTATGAAAGAGTG 3 8 -3814579 -7 CDS b3643 defective ribonuclease PH TTTCAATATGCGTC 3 4 -3806260 -139 CDS b3632 lipopolysaccharide core biosynthesis protein CAAAGTAAGTGCGT 3 1 -3802583 -423 CDS b3628 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D- ATTTTAATGTTGTC 3 5 galactosyltransferase -3800542 -520 CDS b3626 UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase TTACTTTAACTCCG 3 2 -3799105 -117 CDS b3625 lipopolysaccharide core biosynthesis protein ATTTAAAAAAAGAT 3 9 -3799018 -30 CDS b3625 lipopolysaccharide core biosynthesis protein TTACCGTAAATAAC 3 2 -3782529 -64 CDS b3610 glutaredoxin 3 GACACTCCATTTTG 3 1 -3764114 -4136 CDS b3592 predicted glutathione S-transferase ATCTAATGCTAGTC 3 5 -3754659 -125 CDS b3588 dehydrogenase B TTTCAACTATCTCT 3 5 -3723815 -80 CDS b4553 predicted protein GGCTTAAGGAAATT 3 9 -3714580 -163 CDS b3551 biotin sulfoxide reductase CGTTTCTTCATTGT 3 9 -3705893 -165 CDS b3544 dipeptide transporter ACGAGGGGCATTTT 3 9 -3705826 -98 CDS b3544 dipeptide transporter ATAACGTTGACCCG 3 2 -3698620 -510 CDS b4453 toxic polypeptide, small TTCTGATTGTGTTT 3 5 -3694361 -153 CDS b3535 conserved protein TTTTAGTCTTTTCG 3 4 -3694346 -138 CDS b3535 conserved protein TTTTAACTTTTTCT 3 4 -3681683 -213 CDS b3528 C4-dicarboxylic acid, orotate and citrate transporter CTTCGAAGAGAGTT 3 8 -3680034 -71 CDS b3527 predicted zinc-dependent peptidase TTTTAACGTCATTT 3 4 -3654814 -51 CDS b3510 stress response protein acid-resistance protein GTCGAAATTGATTC 3 4 -3651291 -70 CDS b3505 IS5 transposase and trans-activator GTAGGGTGTTCTTT 3 2 -3643272 -67 CDS b3498 oligopeptidase A ATGCTACACACATT 3 9 -3628952 -327 CDS b3487 predicted HlyD family secretion protein GAGACTGTTGATAA 3 1 -3602339 -73 CDS b3464 fused Signal Recognition Particle (SRP) receptor: membrane binding ATCATTTTTTTAGC 3 3 protein/conserved protein -3598886 -80 CDS b3461 RNA polymerase, sigma 32 (sigma H) factor GATAACCTCGTTGC 3 3 -3598872 -66 CDS b3461 RNA polymerase, sigma 32 (sigma H) factor TCTTAAGCTCTGGC 3 4 -3598820 -14 CDS b3461 RNA polymerase, sigma 32 (sigma H) factor TTGAGAGGATTTGA 3 5 -3590449 -101 CDS b3453 glycerol-3-phosphate transporter subunit GTAACAAAAAAGTT 3 8 -3578831 -3 CDS b3440 predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain ATCATGGTCATCAA 3 3 -3534707 -101 CDS b3405 DNA-binding response regulator in two-component regulatory system AATTTAGGCTGAAA 3 5 with EnvZ -3530485 -24 CDS b3402 predicted inner membrane protein ACCTTTTGATTCTG 3 8 -3524195 -24 CDS b3397 ADP-ribose diphosphatase TGATTTCACAGCAT 3 9 -3517403 -317 CDS b3390 shikimate kinase I CGATTTGAGAGTTG 3 7 -3514323 -388 CDS b3387 DNA adenine methylase AATGTTGGTTCGTT 3 1 -3490712 -393 CDS b3363 peptidyl-prolyl cis-trans isomerase A (rotamase A) AGGCAGATTGAAAT 3 4 -3488243 -41 CDS b3359 bifunctional acetylornithine aminotransferase/ ATAATTTCACATTT 3 2 succinyldiaminopimelate aminotransferase -3469412 -61 CDS b3339 protein chain elongation factor EF-Tu (duplicate of tufB) TTAATACCAAAGTC 3 8 -3465032 -19 CDS b3337 bacterioferritin-associated ferredoxin AAAGTATACGGGAG 3 2 -3440622 -50 RR ncRNA 70 Alpha RBS CTTGCAAAGTTGGG 3 5 -3440584 -12 RR ncRNA 70 Alpha RBS AATCTTTTGTATGT 3 1 -3437566 -35 CDS b3293 conserved protein AGCTGTACTCTTTT 3 6 -3431625 -43 CDS b3286 conserved protein AATCGCAAAGATTG 3 7 -3430049 -65 CDS b3283 predicted DNA topoisomerase ATTACTCTTTGAAG 3 3 -3401381 -27 CDS b3252 conserved inner membrane protein TTCCTCACTATCGG 3 6 -3390443 -393 CDS b3244 predicted peptidase ATAATCGTTGCCAA 3 3 -3387503 -144 CDS b3242 membrane protein of efflux system ATAGATAACAGCAT 3 9 -3382336 -46 CDS b3236 malate dehydrogenase, NAD(P)-binding AGCGGAGCAACATA 3 8 -3376678 -5 CDS b3231 50S ribosomal subunit protein L13 TTTTAATGAAAACT 3 9 -3375587 -145 CDS b3229 stringent starvation protein A AATTTTCTGCCCAA 3 1 -3375467 -25 CDS b3229 stringent starvation protein A ATTCTGACTATACC 3 6 -3336084 -171 CDS b3192 predicted ABC-type organic solvent transporter ATTCAGGACACTAA 3 7 -3325000 -43 CDS b3178 protease, ATP-dependent zinc-metallo GTTTTTAACACAGT 3 9 -3322347 -255 CDS b3176 phosphoglucosamine mutase ATAACTATTCATTA 3 3 -3316397 -86 tRNA b3171 tRNA-Met AGATTTTACGTCCC 3 2 -3309806 -42 RR ncRNA 68 S15 TTAACGTCGCGTAA 3 2 -3309271 -81 CDS b3164 polynucleotide phosphorylase/polyadenylase TTAGTCGCGAGGAT 3 9 -3297958 -21 CDS b3154 conserved protein ACAGTATAAAAGAG 3 2 -3256371 -339 CDS b3110 predicted transporter ATATGAACGATAAA 3 6 -3252264 -28 CDS b3105 predicted DNA-binding transcriptional regulator ATGTTCAAATTTCC 3 6 -3242809 -46 CDS b3092 uronate isomerase ATCGCACCATAAGC 3 5 -3213518 -23 CDS b3068 G/U mismatch-specific DNA glycosylase GGTGATGTTAGAAA 3 4 -3204386 -108 CDS b3060 predicted DNA-binding transcriptional regulator AACAGTTCGTGAAT 3 1 -3199054 -67 CDS b3054 predicted adenylate cyclase ACAAAAAAGATCGC 3 6 -3194803 -28 CDS b3052 fused heptose 7-phosphate kinase/heptose 1-phosphate CAAATTTTGAATCT 3 1 adenyltransferase -3190011 -50 CDS b3049 predicted glycogen synthesis protein AGAAAAAGCATATG 3 6 -3189979 -18 CDS b3049 predicted glycogen synthesis protein TAACCGGAGGATGT 3 7 -3181662 826 CDS b3041 3,4-dihydroxy-2-butanone-4-phosphate synthase ATTATGCGACCATA 3 8 -3174987 -132 CDS b3032 cyclic 3 ,5 -adenosine monophosphate phosphodiesterase AATAAAAAGTTGCA 3 5 -3150038 -32 CDS b3006 membrane spanning protein in TonB-ExbB-ExbD complex AGATTTTGTGACTT 3 2 -3117349 -215 CDS b2974 predicted inner membrane lipoprotein TTACGTTGTGAAAT 3 2 -3111770 -271 CDS b2971 predicted protein AAGCATTAGGCATG 3 1 -3100324 -169 CDS b2959 predicted protein ATGCGGAACATATG 3 6 -3100179 -24 CDS b2959 predicted protein CTTAATGTTCGAGA 3 3 -3083950 -17 CDS b2938 biosynthetic arginine decarboxylase, PLP-binding ATAATTTGAGGTTC 3 2 -3081990 -171 CDS b2937 agmatinase TTTGTACGGTTATA 3 5 -3081968 -149 CDS b2937 agmatinase GAAGATGAGTAAGT 3 1 -3079737 -80 CDS b2935 transketolase 1, thiamin-binding CAAATTTTCCGGCG 3 1 -3057375 -28 CDS b2914 ribose 5-phosphate isomerase, constitutive GAAATTTCATACCA 3 1 -3048798 -109 CDS b2905 , tetrahydrofolate-dependent, subunit (T CAAAAGAGAACGAT 3 9 protein) of glycine cleavage complex -3039121 -29 CDS b2897 conserved protein GTACTGGATTTTCG 3 7 -3037790 -25 CDS b2894 site-specific tyrosine recombinase AAATGAGTGACCAT 3 9 -3034313 -9 CDS b2891 peptide chain release factor RF-2 AATCAGACCATGTT 3 6 -3003869 -61 CDS b2869 predicted DNA-binding transcriptional regulator GATCTGTGAACCAT 3 9 -2995918 -296 CDS b2861 KpLE2 phage-like element 3B IS2 insertion element repressor InsA ACTGGATGAAACTC 3 8 -2980232 -28 CDS b2841 arabinose transporter ATGTCTTACTCTCT 3 7 -2947086 -54 CDS b2817 N-acetylmuramoyl-L-alanine amidase CAAATTAGTCGTTT 3 1 -2945225 -25 CDS b2813 membrane-bound lytic murein transglycosylase A ATTTTTTAACCTGA 3 7 -2940661 -72 CDS b2808 DNA-binding transcriptional dual regulator GATTAAAAAAACTA 3 8 -2907728 -40 CDS b2780 CTP synthetase TTATTCCATCGTCT 3 7 -2906248 -285 CDS b2779 enolase ATTGAAGATGCAGG 3 4 -2906123 -160 CDS b2779 enolase ACGTGATGGTCACC 3 5 -2878903 167 CDS b2757 predicted protein GTTATCAGAGAGTG 3 8 -2835567 -120 CDS b2712 carbamoyl phosphate phosphatase and maturation protein for 5BNiFe ATTCCCGGAAATAT 3 9 5D hydrogenases -2830332 -21 CDS b2709 DNA-binding transcriptional activator CAAATTGACAGTGA 3 1 -2821830 -39 CDS b2699 DNA strand exchange and recombination protein with protease and ATTGACTATCCGGT 3 4 nuclease activity -2820060 -27 CDS b2697 alanyl-tRNA synthetase TTTCGTTAGCTTGA 3 7 -2796599 -82 CDS b2669 DNA binding protein, nucleoid-associated TTTGTGGAAATATA 3 8 -2794373 435 CDS b2665 predicted protein ATTCCGGAAGAGTA 3 8 -2764225 -427 CDS b2629 CP4-57 prophage 3B predicted protein CAGCAGGATTGATG 3 4 -2752770 16 CDS b2619 conserved protein GATTTTTGTTGATG 3 1 -2732315 2 NC Novel sRNA, function unknown TCAAGACGATCCGG 3 5 -2729179 0 rRNA b2591 16S ribosomal RNA of rrnG operon AAATTGAAGAGTTT 3 7 -2713408 -66 CDS b2577 predicted DNA-binding transcriptional regulator ACGGAACATTTAAA 3 4 -2708110 -76 CDS b2573 RNA polymerase, sigma 24 (sigma E) factor GCTTGCTCAAATTG 3 8 -2702123 -38 CDS b2567 RNase III TGTGCTGAATTGTT 3 8 -2696606 -34 CDS b2560 conserved protein TTAATCAGGATGTT 3 6 -2666967 -49 CDS b2537 DNA-binding transcriptional activator of 3-phenylpropionic acid AGTTAATTTCTACC 3 4 catabolism -2661369 -24 CDS b2532 tRNA mC32/mU32 methyltransferase, SAM-dependent ATAATCTTTAGATG 3 2 -2657928 -20 CDS b2528 FeS cluster assembly protein ATAAGAGTTGAGGT 3 3 -2654589 169 CDS b2524 conserved protein TTTTGTTAGTCTGG 3 7 -2654561 -181 CDS b2523 aminopeptidase B ATAATTTCCGCGTC 3 2 -2651695 1260 CDS b2522 rhodanase-like enzyme, sulfur transfer from thiosulfate AAAGGAAAGTGAAT 3 5 -2650424 -115 CDS b2520 conserved protein ACAATTCTCACTAA 3 3 -2642935 -49 CDS b2518 multifunctional nucleoside diphosphate kinase and apyrimidinic ATCTCGTACGCTGG 3 7 endonuclease and 3 -phosphodiesterase -2641026 -160 CDS b2516 conserved protein ATGCAACAGTAAGT 3 5 -2640954 -88 CDS b2516 conserved protein AACGGTTAACTTAA 3 7 -2638708 0 NC ncRNA 47 sroE ATAACGTGATGGGA 3 2 -2635811 -433 CDS b2511 predicted GTP-binding protein TTTCATCGTCGACG 3 4 -2632099 -7 CDS b2508 IMP dehydrogenase ATTGCCCATGCTAC 3 7 -2630663 -106 CDS b2507 GMP synthetase (glutamine aminotransferase) TTACTAAAGAGTCC 3 7 -2618931 -37 CDS b2498 uracil phosphoribosyltransferase GATTTTTTTTGTGG 3 1 -2616827 -29 CDS b2496 ATPase regulatory factor involved in DnaA inactivation GATTTTGTGAAATC 3 1 -2541580 -30 CDS b2425 thiosulfate transporter subunit AGAAAGTCATTAAA 3 2 -2529301 -46 CDS b2412 cell division protein involved in Z ring assembly TAAATGTTTGCCGT 3 3 -2518746 -52 CDS b2400 glutamyl-tRNA synthetase TTTTTCCAGGATTT 3 7 -2447951 120 CDS b2332 predicted protein ACTTTTAATTTAAA 3 6 -2439663 -36 CDS b2323 3-oxoacyl- 5Bacyl-carrier-protein 5D synthase I GAAACTTACTCTAT 3 1 -2432036 -88 CDS b2316 acetyl-CoA carboxylase, beta (carboxyltranferase) subunit ATTCATGGTCTGTT 3 4 -2431995 -47 CDS b2316 acetyl-CoA carboxylase, beta (carboxyltranferase) subunit CAAAGATAAAACTG 3 2 -2429833 -127 CDS b2314 conserved protein TTTGATAGCGTTGC 3 6 -2424837 -27 CDS b2309 histidine/lysine/arginine/ornithine transporter subunit ATAAAAAGACTGTC 3 6 -2409504 -130 CDS b2292 predicted transporter TTACTGTGACCAAA 3 2 -2405123 -460 CDS b2289 DNA-binding transcriptional repressor of flagellar, motility and AGATTACTTTGCCT 3 5 chemotaxis genes -2404785 -122 CDS b2289 DNA-binding transcriptional repressor of flagellar, motility and ATTTTTACTTTCGT 3 6 chemotaxis genes -2378723 -58 CDS b2265 isochorismate synthase 2 CTGCATTTTTTTTG 3 4 -2371594 -34 CDS b2259 polymyxin resistance protein B TGATGTGAAAACTC 3 8 -2362338 -41 CDS b2250 predicted outer membrane porin protein GCTTTGGGAATTTT 3 9 -2360256 -23 CDS b2248 predicted DNA-binding transcriptional regulator AGTATCTAAGACTG 3 8 -2310826 -55 CDS b2215 outer membrane porin protein C CAGTATGCAGTGGC 3 1 -2306662 -25 CDS b2211 fused predicted multidrug transport subunits of ABC superfamily: GTAATTCATTGTCC 3 7 membrane component/ATP-binding component -2278566 -61 CDS b2183 16S rRNA pseudouridylate 516 synthase ACAACAGTTCAGAT 3 3 -2276298 -39 CDS b2181 predicted protein AAACAAATTGTGAA 3 4 -2247664 -24 CDS b2157 predicted DNA-binding transcriptional regulator AATCTTTATAAGTG 3 1 -2238475 -105 CDS b2150 methyl-galactoside transporter subunit ATTTTAAAAAGTGA 3 7 -2236029 -254 CDS b2148 methyl-galactoside transporter subunit TAATGCTCGATGAA 3 2 -2228429 -22 CDS b2140 tRNA-dihydrouridine synthase C TCATTTTTTTGCGG 3 2 -2220064 -53 CDS b2132 beta-D-glucoside glucohydrolase, periplasmic GTTTTTGCACCATT 3 8 -2192222 -32 CDS b2113 antiporter inner membrane protein TGATGGTTTATCTA 3 2 -2190865 -47 CDS b2112 predicted protein GCACTCATTCTATC 3 6 -2190296 -52 CDS b2111 predicted fimbrial-like adhesin protein AAGAGATACAGACT 3 9 -2169773 -22 gene b2090 pseudogene AATTGAATATGGGT 3 5 -2149067 -58 CDS b2070 conserved protein TTTTAATGGTTAGT 3 5 -2112375 -24 CDS b2042 predicted subunit with GalU ACCATTTTACAGGT 3 3 -2111256 -171 CDS b2041 dTDP-glucose 4,6 dehydratase, NAD(P)-binding TGAATTTTTCGGGT 3 3 -2109097 -54 CDS b2039 glucose-1-phosphate thymidylyltransferase TTTTTGCATCTTGT 3 7 -2107921 241 CDS b2038 dTDP-4-deoxyrhamnose-3,5-epimerase TTTTTGATGTTGCT 3 6 -2107775 -167 CDS b2037 predicted polisoprenol-linked O-antigen transporter TTTCAATATAAAAC 3 4 -2099381 -89 CDS b2029 gluconate-6-phosphate dehydrogenase, decarboxylating ATACTTTAATAAGT 3 2 -2099348 -56 CDS b2029 gluconate-6-phosphate dehydrogenase, decarboxylating GAACATTCCAGGCC 3 1 -2097696 -59 CDS b2028 UDP-glucose 6-dehydrogenase TCTTATCAGGATGC 3 7 -2096355 -30 CDS b2027 regulator of length of O-antigen component of lipopolysaccharide ACTTGGAAATTTCC 3 6 chains -2087176 -24 CDS b2016 predicted epimerase, with NAD(P)-binding Rossmann-fold domain CTAAGGTGTATCAG 3 2 -2083525 24 CDS b2013 predicted inner membrane protein CTAATTTGTGGTGC 3 2 -2077541 -156 CDS b2007 conserved protein ATCATCTTGCTGCT 3 3 -2066507 -64 gene b4641 pseudogene GACTGAACATATCC 3 5 -2061377 -30 CDS b1990 L,D-transpeptidase linking Lpp to murein ATAGCTTTCGCGAC 3 2 -2060074 -117 CDS b1988 DNA-binding transcriptional dual regulator of nitrogen assimilation CTTATTTGACAGTT 3 8 -2051659 -307 gene b1980 pseudogene CTGTTTGTACTGTC 3 8 -2001653 -23 CDS b1923 flagellar filament structural protein (flagellin) CTTGCAATATAGGA 3 5 -1998434 -25 CDS b1920 cystine transporter subunit AGACATAACAACAT 3 9 -1994934 -78 CDS b1916 DNA-binding transcriptional activator ATATATAAATCTTA 3 8 -1993595 -212 CDS b1914 DNA-binding response regulator in two-component regulatory system TTTTTGTCACATTT 3 8 with BarA -1993427 -44 CDS b1914 DNA-binding response regulator in two-component regulatory system GACTAACTATCAGT 3 5 with BarA -1990874 -33 CDS b1912 phosphatidylglycerophosphate synthetase AATCTTACTGACAA 3 1 -1987525 -11 CDS b1906 predicted protein GAGGAGGGACGATG 3 8 -1944149 55 CDS b4677 expressed protein TTCCAATATAACCT 3 4 -1938252 -35 CDS b1855 myristoyl-acyl carrier protein (ACP)-dependent acyltransferase AGATTGATTTTTGC 3 6 -1934391 -53 CDS b1852 glucose-6-phosphate dehydrogenase TTACAAGTATACCC 3 5 -1934383 -45 CDS b1852 glucose-6-phosphate dehydrogenase ATACCCTGGCTTAA 3 2 -1923331 -338 CDS b1841 conserved protein GACAGATTGACCGA 3 3 -1908162 -39 CDS b1827 predicted DNA-binding transcriptional regulator AGTTCTGATTTTTA 3 7 -1906816 -26 CDS b1826 predicted protein ATAAGGTAGGTGAA 3 2 -1886158 -32 NC ncRNA 33 sroD AATCTAACGTCGGA 3 5 -1875669 -113 CDS b1793 conserved outer membrane protein AACAAAGATGAAAC 3 4 -1875579 -23 CDS b1793 conserved outer membrane protein GGATAAATATGTGA 3 5 -1873622 -22 CDS b1790 predicted DNA-binding transcriptional regulator ATTATCGCTAAGTT 3 9 -1864528 -32 CDS b1782 scaffolding protein for murein synthesizing machinery CCGCTAAACATTTG 3 6 -1860488 -35 CDS b1778 methionine sulfoxide reductase B GTAATGTGAGCACG 3 2 -1846726 -26 CDS b1765 predicted oxidoreductase TAAATATCACGACA 3 2 -1830028 -22 CDS b1748 succinylornithine transaminase, PLP-dependent ATTATTTACTGTAG 3 7 -1819667 -24 CDS b1738 N,N -diacetylchitobiose-specific enzyme IIB component of PTS ATAATCGTCGATGA 3 3 -1798355 4 RR ncRNA 32 LR-PK1 ATGAAGGCGACTAT 3 9 -1798135 -112 CDS b1717 50S ribosomal subunit protein L35 TAAGAAGAAACAGT 3 9 -1797327 -33 CDS b1715 phenylalanyl-tRNA synthetase operon leader peptide TCTTTTGAAGAGTA 3 8 -1793791 -215 CDS b1712 integration host factor (IHF), DNA-binding protein, alpha subunit ATGTAAGAAAGTTG 3 7 -1793201 -25 CDS b1711 vitamin B12 transporter subunit: membrane component of ABC ATGACACTTCAGCA 3 3 superfamily -1790123 -79 CDS b1707 conserved protein CTTCTGTAATTGTT 3 8 -1789278 -10 CDS b1706 conserved protein AGGAGGATCTATGA 3 3 -1762442 -32 CDS b1684 Fe-S cluster assembly protein ATACGCTGAAAGCG 3 2 -1755409 1340 CDS b1678 murein L,D-transpeptidase AGCGTTACAAGTAT 3 9 -1752725 -224 CDS b1674 predicted 4Fe-4S ferridoxin-type protein GTAATTTTAATTGA 3 2 -1735360 -46 CDS b1657 predicted transporter ACTTTAATGAATAT 3 9 -1721100 1579 CDS b1646 superoxide dismutase, Cu, Zn TAACGTAGTCGCTG 3 1 -1717806 -180 CDS b1640 conserved protein AAATATGAGCAAAT 3 1 -1717654 -28 CDS b1640 conserved protein CAAACGTCAGATTG 3 8 -1713997 -84 CDS b1636 pyridoxal kinase 2/pyridoxine kinase ATTACTGTCTGATT 3 3 -1667714 -98 CDS b1595 predicted DNA-binding transcriptional regulator CTTGCTAAATATGC 3 7 -1655507 -26 CDS b1585 predicted protein ATCATCTCTACTCT 3 9 -1653729 -32 CDS b1582 conserved inner membrane protein ATAACTATACATGA 3 3 -1643925 -29 CDS b1564 Qin prophage 3B bifunctional antitoxin of the RelE-RelB toxin- GACATTTGTAATTA 3 1 antitoxin system/ transcriptional repressor -1635870 -64 CDS b1550 Qin prophage 3B predicted protein GTTTGCACCATATA 3 6 -1635851 -45 CDS b1550 Qin prophage 3B predicted protein CTTACTGTGTAACT 3 3 -1634515 -124 gene b1548 pseudogene CTTCGTCGTAACTT 3 9 -1619191 -30 CDS b1533 cysteine and O-acetyl-L-serine efflux system TTACAAAAGATGAA 3 6 -1588058 45 CDS b1505 pseudogene TTTTATAACTTATC 3 6 -1586568 -248 CDS b1503 predicted fimbrial-like adhesin protein CTTTGTTGAAACTG 3 8 -1565318 -154 CDS b1490 predicted diguanylate cyclase AAGAACAGTAGCGT 3 4 -1554071 -84 CDS b1480 30S ribosomal subunit protein S22 GCAACCTAATTTAG 3 7 -1545227 -34 CDS b1473 predicted methyl viologen efflux pump AATTTTTAACGGCA 3 1 -1521181 -92 CDS b1451 predicted iron outer membrane transporter AATTACTTAACGTA 3 8 -1515272 -54 CDS b4598 hypothetical protein GGATTTTCTTAACC 3 2 -1490241 -88 CDS b1420 regulatory peptide GGGTGCCTGAGACT 3 9 -1488776 -39 CDS b1417 pseudogene GATCAATTTTCATC 3 5 -1440913 -46 CDS b1380 fermentative D-lactate dehydrogenase, NAD-dependent ATTTTTAGTAGCTT 3 9 -1424997 1753 CDS b1370 IS5 transposase and trans-activator ACTGAGAACCATTT 3 7 -1410184 -212 CDS b1344 predicted C32 tRNA thiolase ATACTTTTGCCTGC 3 2 -1396683 -37 CDS b1333 stress-induced protein ACAAACTGCGTTGA 3 2 -1386868 -33 CDS b1324 lipid hydroperoxide peroxidase GACGTTAACTATAT 3 7 -1349112 -49 CDS b1288 enoyl- 5Bacyl-carrier-protein 5D reductase, NADH-dependent ATCGCCTGATTTTC 3 8 -1341449 -97 CDS b1283 lipoprotein GAGCAGATTTCACG 3 4 -1328719 -27 CDS b1273 predicted protein CTAATGTCCTTGTT 3 2 -1310298 -28 CDS b1253 predicted hydrolase GTGATTTTCCTTTT 3 3 -1308374 -81 CDS b1250 voltage-gated potassium channel AACACATTCACGCG 3 3 -1306680 -11 CDS b1249 cardiolipin synthase 1 ATTTCTAATCTATG 3 6 -1297477 -133 CDS b1241 fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol TAAATCACAGTGAG 3 6 dehydrogenase/pyruvate-formate lyase deactivase -1297440 -96 CDS b1241 fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol TTTTCATAGGTTAA 3 7 dehydrogenase/pyruvate-formate lyase deactivase -1297374 -30 CDS b1241 fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol AAAAAAGTTTAACA 3 3 dehydrogenase/pyruvate-formate lyase deactivase -1288373 -18 CDS b1233 conserved protein TTTCCAGGGAGATT 3 9 -1286462 -63 CDS b1229 predicted protamine-like protein TTTCAAAAGTCCCT 3 5 -1233988 -48 CDS b1186 sodium:proton antiporter TTAAACATAAAAAC 3 3 -1226729 -34 CDS b1178 predicted protein GTTCATCGTACTCA 3 4 -1225362 -59 CDS b1176 cell division inhibitor AGTCTTCGGAACAT 3 9 -1222320 66 CDS b4593 hypothetical protein ACGCTCATTTTGAA 3 6 -1203044 -888 CDS b1145 e14 prophage 3B repressor protein phage e14 GCGTTAGTTTCTCC 3 5 -1184883 -66 CDS b1126 polyamine transporter subunit CTCATTAAGAGTCA 3 7 -1145848 -30 CDS b1087 predicted protein ATCAATACGCTATA 3 6 -1143607 -17 CDS b1084 fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA ATAATGAGTAAGTT 3 9 degradosome binding protein -1121866 -36 CDS b1062 dihydro-orotase GGCAAAAACATCCC 3 6 -1118294 -25 CDS b1057 predicted cytochrome b561 TCGCAAATTCGTTT 3 4 -1108345 -181 CDS b1047 membrane protein required for modification of periplasmic glucan CAAATTTATTTATC 3 1 -1078145 -40 CDS b1014 fused DNA-binding transcriptional regulator/proline AACGTTAAGTTGCA 3 6 dehydrogenase/pyrroline-5-carboxylate dehydrogenase -1073288 -54 CDS b1012 predicted monooxygenase TTTTAAAAACTGGC 3 6 -1068877 185 CDS b1006 predicted transporter TTTAATGTCGGGGA 3 3 -1063056 -58 CDS b1000 curved DNA-binding protein, DnaJ homologue that functions as a co- ATAGGAGTTACCTT 3 9 chaperone of DnaK -1063051 -53 CDS b1000 curved DNA-binding protein, DnaJ homologue that functions as a co- AGTTACCTTACAGG 3 4 chaperone of DnaK -1041752 1681 CDS b0981 cryptic autophosphorylating protein tyrosine kinase Etk AAAAAGTGTTATTT 3 2 -1029915 -24 CDS b0969 predicted sulfite reductase subunit AGTCTGATTAAGGT 3 9 -1029908 -17 CDS b0969 predicted sulfite reductase subunit TTAAGGTAGTAATA 3 2 -1027966 -22 CDS b0966 DNA-binding protein, hemimethylated AAAGATTTCCCGGG 3 1 -1026264 -26 CDS b0963 methylglyoxal synthase AGGAAAGTTAACTA 3 3 -1023560 11 CDS b0961 conserved inner membrane protein TTTGAACATTCTGA 3 4 -1003714 3109 CDS b0947 predicted 2Fe-2S cluster-containing protein ATCAGGTTAATGTA 3 8 -989638 -59 CDS b0931 nicotinate phosphoribosyltransferase AGTTCCTGAAGATG 3 8 -984958 -26 CDS b0928 aspartate aminotransferase, PLP-dependent TTCTGTAACCATAA 3 7 -950378 -75 CDS b0902 pyruvate formate lyase activating enzyme 1 AAAACAGACTCGAC 3 5 -948821 -30 CDS b0900 predicted DNA-binding transcriptional regulator TCAGGATGAGTTAA 3 2 -925701 -35 CDS b0884 translation initiation factor IF-1 GTTCAAATTACGGT 3 4 -925694 -28 CDS b0884 translation initiation factor IF-1 TTACGGTAGTGATA 3 2 -921858 -45 CDS b0880 cold shock protein homolog TTTATTCCATCTTA 3 8 -918326 17 CDS b0877 conserved protein ATGTATAACCATTG 3 7 -915454 -184 CDS b0875 aquaporin AGACAAATGACTAT 3 9 -911723 -350 CDS b0872 HCP oxidoreductase, NADH-dependent AACAAACTTGAGTT 3 3 -910299 -27 CDS b0871 pyruvate dehydrogenase (pyruvate oxidase), thiamin-dependent, FAD- GTTATCACATTCAG 3 6 binding -882682 -71 CDS b0841 undecaprenyl pyrophosphate phosphatase TTTAACCTGCACTT 3 3 -837705 -26 CDS b0803 conserved protein ACAAGTATTGATAT 3 3 -808513 -33 CDS b0774 7,8-diaminopelargonic acid synthase, PLP-dependent CTAAATCTTTTCAA 3 4 -806537 -33 CDS b0772 predicted TTCATTTTTCTATT 3 3 -797681 -27 CDS b0766 predicted hydrolase ATTCTTAACCTTAA 3 6 -788097 -37 CDS b0756 galactose-1-epimerase (mutarotase) CTTTTTACGTTTGT 3 6 -786893 -75 CDS b0755 phosphoglyceromutase 1 AAGCATTGCTGTTG 3 1 -784663 -123 CDS b0753 conserved protein ATTTCAAGATTCTC 3 5 -754018 -327 CDS b0720 citrate synthase AGGAAAAGCATATA 3 6 -752404 -386 CDS b0719 predicted fimbrial-like adhesin protein TTGATTGCTAAGTT 3 9 -752400 -382 CDS b0719 predicted fimbrial-like adhesin protein TTGCTAAGTTGTAA 3 5 -741892 -113 CDS b0709 predicted transporter ATCAGACAGCATAT 3 7 -717567 -79 CDS b0692 putrescine/proton symporter: putrescine/ornithine antiporter ATGATGGTCGTAAG 3 3 -712066 -41 CDS b0686 conserved protein ATAATACCCTAACC 3 5 -710719 -31 CDS b0684 flavodoxin 1 TTTCAATAAGTTTC 3 7 -692692 -91 CDS b0660 predicted protein with nucleoside triphosphate hydrolase domain AATGCTTGCGCCTT 3 1 -691100 -93 CDS b0658 predicteed ion transport ATAATTTGCCAGGC 3 2 -687066 -96 CDS b0655 glutamate and aspartate transporter subunit GCACAACACTGCAC 3 5 -668296 -37 CDS b0637 predicted protein ACCATTTTTATCTA 3 3 -661929 -64 CDS b0631 conserved protein ATCAGTAAAAAACT 3 9 -605447 -25 CDS b0580 predicted inner membrane protein GTTTTAACTTACAT 3 5 -604668 -21 CDS b0578 dihydropteridine reductase, NAD(P)H-dependent, oxygen-insensitive TTACTTTCACATGG 3 2 -592574 -173 CDS b0569 bacteriophage N4 receptor, inner membrane subunit TTTGTTATCACATT 3 9 -592554 -153 CDS b0569 bacteriophage N4 receptor, inner membrane subunit TTAATCCTTCAGCA 3 3 -584881 -25 CDS b0565 DLP12 prophage 3B outer membrane protease VII (outer membrane TAAAACGATTGAAT 3 4 protein 3b) -519021 -32 CDS b0494 multifunctional acyl-CoA I and protease I and TCATGCTCCCCCTG 3 2 L1 -517529 -26 CDS b0492 predicted thioredoxin domain-containing protein AAATATCGACAACA 3 1 -510635 -32 CDS b0484 copper transporter AGCCAGTCAAAACT 3 9 -504044 -124 CDS b0479 predicted fosmidomycin efflux system AGATTAGAAATTCT 3 7 -502520 -58 CDS b0478 predicted transporter with NAD(P)-binding Rossmann-fold domain TGTAATTTTGGTTT 3 3 -484888 -45 CDS b0463 multidrug efflux system TTTTGACCATTGAC 3 5 -478512 -37 CDS b0458 predicted inner membrane protein GTTCCCTGGAAAGT 3 9 -453433 -42 CDS b0434 predicted lipoprotein AATTTTTACCAAAC 3 1 -453421 -30 CDS b0434 predicted lipoprotein ACACGCTTAAGAGT 3 9 -453415 -24 CDS b0434 predicted lipoprotein TTAAGAGTCTCTGA 3 3 -443784 -45 CDS b0425 2-dehydropantoate reductase, NADPH-specific ATAGCCTTATTGAA 3 2 -411748 -43 CDS b0396 predicted transporter GGCTACGGTGATTG 3 4 -407786 1457 CDS b0393 DNA-binding protein, non-specific ATATCGGAAATTGA 3 7 -395543 -32 CDS b0376 beta-lactamase/D-alanine carboxypeptidase AGTTACCTTCATTC 3 4 -357932 -18 CDS b0338 DNA-binding transcriptional dual regulator TTTACTTATAGGTT 3 9 -301863 -66 CDS b0286 predicted xanthine dehydrogenase, 2Fe-2S subunit TTAAAAAAGCATCA 3 7 -292170 2 CDS b0277 CP4-6 prophage 3B conserved protein GAAAACATATCAAG 3 3 -268252 -68 CDS b0253 CP4-6 prophage 3B predicted GTP-binding protein GAACATACGCAATT 3 1 -246533 -31 CDS b0226 predicted antitoxin of YafQ-DinJ toxin-antitoxin system TGAATAAATATACA 3 6 -174992 -110 CDS b0154 glutamate-1-semialdehyde aminotransferase (aminomutase) AAATCAGGATTGCA 3 5 -160657 -53 CDS b0145 DNA-binding transcriptional regulator of rRNA transcription, DnaK CTCATTTTTCCCCC 3 3 suppressor protein -160651 -47 CDS b0145 DNA-binding transcriptional regulator of rRNA transcription, DnaK TTTCCCCCGAACAT 3 9 suppressor protein -159154 -28 CDS b0143 poly(A) polymerase I ATGATGTTTGACAC 3 3 -149630 -29 CDS b0134 3-methyl-2-oxobutanoate hydroxymethyltransferase AGCACAACATCAAT 3 5 -149617 -16 CDS b0134 3-methyl-2-oxobutanoate hydroxymethyltransferase TTTATCAGGATACG 3 6 -63531 -267 CDS b0059 RNA polymerase-associated helicase protein (ATPase and RNA ACACTATCTGACCC 3 2 polymerase recycling factor) -36489 -327 CDS b0036 crotonobetainyl CoA hydratase ATTCAGGACATCGT 3 9 -21118 -40 CDS b0023 30S ribosomal subunit protein S20 CTTTGAATTGTCCA 3 6 -10430 64 CDS b0010 conserved inner membrane protein associated with acetate transport TTCTGCTTAACCTG 3 8 170 -20 CDS b0001 thr operon leader peptide TTACAGAGTACACA 3 4 9277 -29 CDS b0009 predicted molybdochelatase AACGAGACTGTTTA 3 4 15253 -192 CDS b0016 IS186/IS421 transposase CTTCTTTGATGGTG 3 8 15338 -107 CDS b0016 IS186/IS421 transposase ATAGGGTGCGTTGA 3 2 21383 -24 CDS b0025 bifunctional riboflavin kinase/FAD synthetase GATTTTCACTGTTT 3 1 25804 -22 CDS b0028 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) TTAAATATAAGAGC 3 3 28343 -31 CDS b0031 dihydrodipicolinate reductase GGTCTATGCAAATT 3 9 29551 -100 CDS b0032 carbamoyl phosphate synthetase small subunit, glutamine GTTTGCCAGAAATT 3 9 amidotransferase 34273 -27 CDS b0034 DNA-binding transcriptional activator CTTTTAATTTGTGA 3 5 49799 -24 CDS b0048 dihydrofolate reductase AATTTTTTTTATCG 3 1 58946 472 gene b0057 pseudogene CTTACCTTCCCGGC 3 3 77357 -10 NC sRNA that destabilzes ptsG mRNA 3B regulated by sgrR AATTCCTAACGATG 3 8 85599 -31 CDS b0077 acetolactate synthase III, large subunit ACATTTTTTCCGTC 3 2 89589 -45 CDS b0081 conserved protein AGTGGGAAATTGTG 3 6 89954 -140 CDS b0082 S-adenosyl-dependent methyltransferase activity on membrane-located AGTGATGCTGGTTG 3 4 substrates 90682 -350 CDS b0083 membrane bound cell division protein at septum containing leucine TTTAAACATCCCGC 3 4 zipper motif 106530 -27 CDS b0096 UDP-3-O-acyl N-acetylglucosamine deacetylase GGATAGGTAATTTG 3 8 107977 272 CDS b0097 regulator of secA translation TCATCTTTCTTTCG 3 2 122034 -58 CDS b0113 DNA-binding transcriptional dual regulator ACAGACATGAAATT 3 9 122852 -165 CDS b0114 pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding ATTAGTGATTTTTC 3 7 122975 -42 CDS b0114 pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding TTCCAGAAAACTCA 3 7 130202 -1413 CDS b0118 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase AAGATGCTCACCGG 3 3 137044 -39 CDS b0123 multicopper oxidase (laccase) TTGATTTTGTTTCG 3 3 145108 27 CDS b0130 predicted polysaccharide deacetylase lipoprotein CTGATGCTGTTTAC 3 3 147647 679 CDS b0132 predicted transposase TTTACGGTGTGTTG 3 3 167443 -41 CDS b0150 ferrichrome outer membrane transporter CTCGTTTACGTTAT 3 7 174975 -132 CDS b0155 chloride channel, voltage-gated CTGGTGCAATCCTG 3 8 191820 -35 CDS b0171 uridylate kinase TTCATTTCAATCGT 3 9 192617 -255 CDS b0172 ribosome recycling factor AAGTATCGCGGGGG 3 1 192854 -18 CDS b0172 ribosome recycling factor TTTTCAAGGATTCG 3 6 192863 -9 CDS b0172 ribosome recycling factor ATTCGTAACGTGAT 3 6 194843 -60 CDS b0174 undecaprenyl pyrophosphate synthase TTTTTGTATAGGCT 3 9 200212 -270 CDS b0178 periplasmic chaperone ATCCAAGCAATATC 3 8 200387 -95 CDS b0178 periplasmic chaperone TAGTGTAGCGATGA 3 1 209658 -21 CDS b0186 lysine decarboxylase 2, constitutive AGGATTTTCCAGGA 3 3 223771 0 rRNA b0201 16S ribosomal RNA of rrnH operon AAATTGAAGAGTTT 3 7 231063 -59 CDS b0209 conserved protein AACAGTAGAACCCT 3 1 246656 -56 CDS b0227 predicted lipoprotein and C40 family peptidase TCAGAAACGATCCG 3 6 274508 -41 CDS b0260 CP4-6 prophage 3B predicted S-methylmethionine transporter CTTCTTTGGATGTT 3 9 312032 696 CDS b0295 predicted protein ATAAAGATACATGC 3 3 328645 -42 CDS b0314 choline transporter of high affinity GAATTTGATTTTAA 3 7 331462 -133 CDS b0315 predicted DNA-binding transcriptional regulator ATAATCTTCTTGAT 3 2 345678 -30 CDS b0329 predicted protein ATAGTGTGATAACA 3 2 354108 -38 CDS b0336 cytosine transporter GATTTTTTGGGTTT 3 1 395657 -206 CDS b0377 predicted transporter ATTTGTGATCCTGC 3 7 400543 -67 CDS b0382 predicted protein TCCAGACACTATGA 3 5 400875 -96 CDS b0383 bacterial alkaline phosphatase TTAATCTTTTCAAC 3 2 405502 -127 CDS b0388 shikimate kinase II GTATTGAGATTTTC 3 6 406399 196 CDS b0389 predicted protein ATCAGACTGCTCGG 3 3 407371 -30 CDS b0391 conserved protein AGATGTTCAACTAC 3 2 418776 -39 CDS b0401 predicted branched chain amino acid transporter (LIV-II) TTTAACGTTACAAC 3 3 435808 -5 CDS b0418 phosphatidylglycerophosphatase A AGGATATGACCATT 3 8 443852 -55 CDS b0426 predicted nucleotide binding protein TTATTTAACTTTGC 3 6 454331 -26 CDS b0436 peptidyl-prolyl cis/trans isomerase (trigger factor) GCACTGTGATTTTT 3 8 455778 -123 CDS b0437 proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine CAAAAGATTGTTAT 3 3 proteases 455873 -28 CDS b0437 proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine TTTTTTCAATTTTA 3 8 proteases 459337 1225 CDS b0439 DNA-binding ATP-dependent protease La AAATGGCGAAAGTG 3 8 459339 1227 CDS b0439 DNA-binding ATP-dependent protease La ATGGCGAAAGTGGG 3 6 460619 -56 CDS b0440 HU, DNA-binding transcriptional regulator, beta subunit GCGTTCGTACCTTG 3 8 490082 -24 CDS b0468 conserved inner membrane protein CTCTGTAAGCTGAC 3 6 493139 559 RR ncRNA 7 DnaX AGAAAAACTTGCGC 3 4 493242 662 RR ncRNA 7 DnaX ATTTGATCGTAAGC 3 5 493275 -25 CDS b0471 conserved protein CTTAACGTGATTGA 3 3 494306 -38 CDS b0473 molecular chaperone HSP90 family TTTTTAACCTTAAA 3 5 518602 -355 CDS b0495 predicted transporter subunit: ATP-binding component of ABC ACAATGGTTCAGCG 3 3 superfamily 518895 -62 CDS b0495 predicted transporter subunit: ATP-binding component of ABC ATCAATAACGTGTC 3 6 superfamily 532189 -46 CDS b0506 DNA-binding transcriptional repressor ATTGTTCATTGTTT 3 7 532861 -279 CDS b0507 glyoxylate carboligase AGAGCATGTTGTAG 3 2 535605 -205 CDS b0509 tartronate semialdehyde reductase, NADH-dependent CTTTAAGGTAATCG 3 4 536895 38 CDS b0511 predicted allantoin transporter TAGCGAAGATCTAT 3 5 565404 -195 CDS b4508 pseudogene CAAAACTCGCCATG 3 2 578930 -173 CDS b0559 DLP12 prophage 3B predicted protein AATGTTTTCAATTA 3 1 607066 7 CDS b4415 toxic polypeptide, small CGAAATATGCCCTT 3 3 638130 -38 CDS b0605 alkyl hydroperoxide reductase, C22 subunit TTACCTTACATCTC 3 2 656473 -42 CDS b0623 DNA-binding transcriptional repressor GACACAGCATTTGT 3 5 663180 5010 CDS b0627 TatABCE protein translocation system subunit TATTCATGGTCTGA 3 5 678687 -44 CDS b0648 predicted tRNA ligase AATAAAAAAGTAGT 3 6 705283 -33 CDS b0680 glutamyl-tRNA synthetase GTTATACGTTGTTT 3 5 705286 -30 CDS b0680 glutamyl-tRNA synthetase ATACGTTGTTTACG 3 2 705309 -7 CDS b0680 glutamyl-tRNA synthetase ATCCACGATGAGTG 3 4 707487 -70 CDS b0681 predicted outer membrane porin CTTTTTTAATTTTT 3 7 728295 -62 CDS b0699 predicted protein AGATAAACAAATTC 3 8 728306 -51 CDS b0699 predicted protein TTCATTTTTCCGGT 3 3 754745 -38 CDS b0722 succinate dehydrogenase, membrane subunit, binds cytochrome b556 ATTACTGTCGTGCT 3 3 757777 -152 CDS b0726 2-oxoglutarate decarboxylase, thiamin-requiring AAAACTGCCCCTGA 3 1 765093 -114 CDS b0731 fused 2-O-a-mannosyl-D-glycerate specific PTS enzymes: IIA TCCCATTTTTAGTA 3 4 component/IIB component/IIC component 780263 -28 tRNA b0746 tRNA-Val AGTAGTTTGTAGTA 3 3 781226 -82 CDS b0750 quinolinate synthase, subunit A ATATAAAACAAATT 3 9 782268 -121 CDS b0751 predicted nicotinamide mononucleotide transporter GTTCATGTTGATGA 3 4 784830 -26 CDS b0754 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine ATAAGTATGGCAAC 3 3 repressible 793974 -22 CDS b0762 predicted protein ATGACTATATCTGG 3 3 794285 -27 CDS b0763 molybdate transporter subunit ACATAACGTTACAT 3 4 816050 -85 RR ncRNA 11 MOCO RNA motif GAAATAGCACGATC 3 8 816137 2 RR ncRNA 11 MOCO RNA motif AACCACTAAACACT 3 9 817223 -55 CDS b0782 molybdopterin biosynthesis protein B TATTACGCAAAACT 3 9 830008 -87 CDS b0797 RNA helicase CTCATGACATTGTG 3 6 841376 -179 CDS b0807 23S rRNA mA1618 methyltransferase, SAM-dependent TTTTGAACGATATA 3 6 849446 -227 CDS b0814 outer membrane protein ATCATTAGTCTGGT 3 6 849610 -63 CDS b0814 outer membrane protein TTTCCCATTAATTT 3 9 862837 -28 CDS b0825 fructose-6-phosphate aldolase 1 AGACAAAAAGTACA 3 6 879851 -99 CDS b0839 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) CTTACGGTTTCTTT 3 3 879858 -92 CDS b0839 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) TTTCTTTAAGTTTG 3 7 903754 -62 CDS b0866 conserved protein AATAGCGTATCAGT 3 3 922314 -173 CDS b0882 ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine AATTGATGCTCGCT 3 5 protease, chaperone activity 922434 -53 CDS b0882 ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine TGTGTACGCTAGAA 3 5 protease, chaperone activity 936440 -155 CDS b0891 chaperone for lipoproteins ATGCATCGTATGCC 3 4 938576 -75 CDS b0893 seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with serine AATGTTGTTACTGT 3 1 938645 -6 CDS b0893 seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with serine ATAAGCATGCTCGA 3 3 945064 -30 CDS b0898 predicted transporter GAAATTTGAACTTC 3 1 948867 -24 CDS b0901 conserved protein AGAACTTAACGTGG 3 7 956808 -68 CDS b0907 3-phosphoserine/phosphohydroxythreonine aminotransferase ATAATGTATTACCT 3 2 982798 -75 CDS b0927 predicted metal-binding enzyme ACGTAGTAACTTTG 3 7 986622 -3223 CDS b0932 aminopeptidase N AAGAAAAAACTAAT 3 6 1006895 -172 CDS b0948 23S rRNA mG2445 methyltransferase, SAM-dependent AATTTTCTTAGCGC 3 1 1014873 -65 CDS b0953 ribosome modulation factor GTGATTGCACATTT 3 8 1027106 -63 CDS b0965 predicted CoA-binding protein with NAD(P)-binding Rossmann-fold ATTAGCTGCATGGT 3 9 domain 1027150 -19 CDS b0965 predicted CoA-binding protein with NAD(P)-binding Rossmann-fold AAACAGTCTGGAGG 3 2 domain 1029195 -92 CDS b0968 predicted acylphosphatase TTTACTTTTCTGTC 3 3 1050625 -59 CDS b0990 DNA-binding transcriptional regulator AAGTAGTTTCTGTA 3 4 1067262 -42 CDS b4518 conserved protein ATTCTATGCAATAT 3 9 1078392 -136 CDS b1015 proline:sodium symporter AAATCGATTGTGAA 3 6 1078512 -16 CDS b1015 proline:sodium symporter TTTTTGGAGACTTT 3 7 1097057 -52 CDS b1033 2-ketoacid reductase ATCATAACGATAAG 3 6 1115994 -36 CDS b1055 conserved protein GATTTTTACTTTCC 3 1 1130215 -26 CDS b1073 flagellar component of cell-proximal portion of basal-body rod AGAATTTTGATACC 3 3 1150772 -66 CDS b1094 acyl carrier protein (ACP) TTTTTCAACATTTT 3 6 1150791 -47 CDS b1094 acyl carrier protein (ACP) CTACGAAAACCATC 3 8 1150828 -10 CDS b1094 acyl carrier protein (ACP) ATTTAAGAGTATGA 3 5 1151133 -29 CDS b1095 3-oxoacyl- 5Bacyl-carrier-protein 5D synthase II ATCATTTTTTCCCT 3 3 1154281 -66 CDS b1098 thymidylate kinase TTAATACCAATCTT 3 9 1156977 -115 CDS b1101 fused glucose-specific PTS enzymes: IIB component/IIC component TTACTCTGTGTAAT 3 2 1164238 -128 CDS b1108 conserved protein TTCATTTTCGCGAC 3 3 1168242 -54 CDS b1112 predicted protein ATCGATCGTTAAGT 3 4 1184963 -104 CDS b1127 peptidase T AATGCTGATAAATA 3 1 1185046 -21 CDS b1127 peptidase T ACAAAAAGTGAGGG 3 4 1194184 -162 CDS b1136 e14 prophage 3B isocitrate dehydrogenase, specific for NADP+ ATAACGCGCATCTT 3 9 1219841 1017 gene b1170 pseudogene AACAAAACTACAAC 3 4 1228027 -11 CDS b1181 conserved protein GTTTTAACGTAATG 3 5 1230085 95 CDS b1183 DNA polymerase V, subunit D TTACGTTGAACAGC 3 2 1236762 -32 CDS b1189 D-amino acid dehydrogenase CTTTTACTGTATCT 3 5 1241244 -1159 CDS b1193 lytic murein endotransglycosylase E GACAAGGATGGATC 3 4 1242388 -15 CDS b1193 lytic murein endotransglycosylase E ATAAGGATAGAAGA 3 3 1243901 -50 CDS b1195 predicted inner membrane protein GTTGATGTAAGCAT 3 9 1267079 -309 CDS b1215 3-deoxy-D-manno-octulosonate 8-phosphate synthase AATCCGCAAATTGC 3 7 1267253 -135 CDS b1215 3-deoxy-D-manno-octulosonate 8-phosphate synthase TTTAAGTTATTTCG 3 3 1267374 -14 CDS b1215 3-deoxy-D-manno-octulosonate 8-phosphate synthase ATTAAGGCGATCCT 3 9 1272845 -162 CDS b1220 predicted invasin ATTAGACACTCATC 3 5 1288358 -110 CDS b1234 conserved protein ATAATCTCCCTGGA 3 2 1290550 -130 CDS b1236 glucose-1-phosphate uridylyltransferase ATAAGTAATTGTCT 3 7 1290629 -51 CDS b1236 glucose-1-phosphate uridylyltransferase GATACAGAAATATG 3 8 1299035 -171 CDS b1243 oligopeptide transporter subunit ATCGACATAAGGTG 3 8 1299087 -119 CDS b1243 oligopeptide transporter subunit TAATACGTAACGAT 3 9 1299154 -52 CDS b1243 oligopeptide transporter subunit ATTACACATGCTGG 3 7 1301158 235 CDS b1244 oligopeptide transporter subunit TTAAATATAAAGAT 3 3 1312015 -29 CDS b1256 outer membrane protein W GTTTTTATAACCAT 3 9 1324321 -555 CDS b1269 23S rRNA pseudouridylate synthase CAAACTGGACAGCA 3 1 1331804 -75 CDS b1275 DNA-binding transcriptional dual regulator, O-acetyl-L-serine- ATTAAATCGTATTA 3 5 binding 1333453 138 CDS b4523 hypothetical protein TTTGCTGAAGATGA 3 7 1359076 -68 CDS b1298 gamma-Glu-GABA hydrolase ATATTGAACATAAA 3 6 1367686 -27 CDS b1308 thiosulfate:cyanide sulfurtransferase (rhodanese) AATTTTCATCCATA 3 1 1384715 -29 CDS b1323 DNA-binding transcriptional dual regulator, tyrosine-binding AATTGTTCTTTTTT 3 1 1429174 -1261 CDS b1373 Rac prophage 3B predicted tail fiber assembly protein ATAACTTGTCGTGC 3 2 1441032 -43 CDS b1381 predicted protein ATTGAATGCTTAAT 3 5 1469159 618 gene b1405 pseudogene TTAACCTCGAAAAA 3 2 1485191 -68 CDS b1414 conserved protein CTTTCAGAGTGCTC 3 5 1501681 0 CDS b1432 predicted transposase GTGAAACGATTACA 3 5 1515286 -127 CDS b1445 predicted inner membrane protein TTCTGAAGATGGAT 3 5 1524249 -22 CDS b1454 predicted enzyme TTTAAAAGATTGTG 3 5 1531017 -59 CDS b1461 4-oxalocrotonate tautomerase ACACATGACATTCA 3 7 1545331 -94 CDS b1474 formate dehydrogenase-N, alpha subunit, nitrate-inducible CAAACAGATGTTCT 3 7 1620623 -47 CDS b4599 hypothetical protein ATTAAGGTAAGCGA 3 3 1625525 -16 CDS b1539 L-allo-threonine dehydrogenase, NAD(P)-binding GTTGAGGAACAGTG 3 8 1645971 13 CDS b1570 Qin prophage 3B predicted regulator for DicB ATTTAACTATCGGC 3 5 1653746 -86 CDS b1583 predicted protein ATCAATATAAACAC 3 3 1656061 -32 CDS b1587 oxidoreductase subunit TTTATATAACGATA 3 8 1686569 -31 CDS b1613 mannose-6-phosphate isomerase ATTAATTTCCACAT 3 3 1686575 -25 CDS b1613 mannose-6-phosphate isomerase TTCCACATTAAAAC 3 4 1697348 -31 CDS b1621 fused maltose and glucose-specific PTS enzymes: IIB component, IIC ATCCAGATTGTTCT 3 4 component 1702412 -163 CDS b4409 beta-lactam resistance membrane protein AATAAGGGATGTTG 3 8 1717775 -125 CDS b1641 outer membrane lipoprotein GATCCTACTTTCAT 3 1 1717842 -58 CDS b1641 outer membrane lipoprotein ATACTTTGACCATG 3 2 1717855 -45 CDS b1641 outer membrane lipoprotein GAGGGATGCTTGCG 3 5 1718960 -89 CDS b1643 predicted inner membrane protein ATTTTTCAGAAATT 3 9 1725824 -37 CDS b1651 glyoxalase I, Ni-dependent ACATTTTGAATCTG 3 2 1753685 -37 CDS b1676 pyruvate kinase I TTCTCCCATCCTTC 3 7 1753703 -19 CDS b1676 pyruvate kinase I CTTAAAGACTAAGA 3 5 1755407 -38 CDS b1677 murein lipoprotein GCTACATGGAGATT 3 9 1766794 -304 CDS b1688 predicted inner membrane protein TTTGTTTACTCTAT 3 7 1786444 -15 CDS b1704 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tryptophan TTTCTGAGACTTGT 3 6 repressible 1797314 -3804 CDS b1721 pseudogene TACTCTTCAAAAGA 3 1 1805794 -26 CDS b1725 predicted phosphotransferase/kinase CTGGCAGACAACAT 3 9 1807313 -91 CDS b1727 predicted hydrolase TTTCGCCCATTCTT 3 8 1808906 -52 CDS b1729 predicted transporter AACACTATGACTGC 3 1 1821516 -23 CDS b1741 endonuclease of nucleotide excision repair ATAACCAGCATTCG 3 6 1833341 -198 CDS b1753 conserved protein TTCAATACGTTTTC 3 6 1833483 -56 CDS b1753 conserved protein GTGGTGATTTTTAT 3 6 1840347 -48 CDS b1761 glutamate dehydrogenase, NADP-specific ATAAACAACATAAG 3 6 1840362 -33 CDS b1761 glutamate dehydrogenase, NADP-specific ACAATCGTATTAAT 3 3 1869267 -798 CDS b1786 predicted diguanylate cyclase CTGGATGAGTATAA 3 7 1870070 5 CDS b1786 predicted diguanylate cyclase ATTGCACCATAGAA 3 5 1875691 -48 CDS b1794 predicted diguanylate cyclase CAAAGATTAAATAA 3 2 1881168 -44 CDS b1801 predicted transporter ATGCAAATTTTGTT 3 4 1901068 -38 CDS b1818 mannose-specific enzyme IIC component of PTS TTTTCACACTTAAG 3 5 1902743 -82 CDS b1820 conserved inner membrane protein TTACGCTTGCGGCC 3 2 1906179 -770 CDS b4536 predicted protein GTCAGACCAGAGTT 3 8 1914258 -24 CDS b1833 conserved inner membrane protein AATTCTTATTACAT 3 1 1920121 -24 CDS b1837 predicted protein ACGGCACCACACTT 3 8 1934613 -63 CDS b1853 predicted DNA-binding transcriptional regulator CAAAACTGCATTTC 3 2 1935526 -147 CDS b1854 pyruvate kinase II ATTTAAGTGACGAT 3 9 1940625 -61 CDS b1858 zinc transporter subunit: ATP-binding component of ABC superfamily TAATGAATATGAGA 3 5 1950455 165 CDS b1869 predicted inner membrane protein ATCGCGATTGTGCT 3 6 1980567 2790 CDS b1895 universal stress protein AGAAAAAAGCATCA 3 7 1986706 -34 CDS b1905 ferritin iron storage protein (cytoplasmic) ACAGCAACAAATAT 3 9 1993814 -28 CDS b1915 predicted protein TTTCATTGCAACAT 3 9 2008610 -14 CDS b1932 predicted acyltransferase AATACGGAATCGTC 3 8 2008621 -3 CDS b1932 predicted acyltransferase GTCATGTTCACGAT 3 3 2011167 -86 CDS b1938 flagellar basal-body MS-ring and collar protein GTCAATTTTTCGAG 3 4 2018934 -178 CDS b1946 flagellar motor switching and energizing component TTTTAAAACTGAAC 3 5 2039382 -17 CDS b1973 conserved metal-binding protein CTCTGGAGGAAACT 3 9 2047956 -3711 CDS b1981 shikimate transporter ACTAGCCTCCTTAA 3 3 2053054 -31 CDS b1982 AMP nucleosidase GTGCGGTAATTGTA 3 8 2054822 -60 CDS b1983 conserved protein AATTAACACATGTT 3 9 2054830 -52 CDS b1983 conserved protein CATGTTAACGATTT 3 1 2054841 -41 CDS b1983 conserved protein TTTACCAGTAATGT 3 9 2068330 36 gene b1998 pseudogene TGATGGTCAGGAGG 3 2 2135887 -39 CDS b2063 fused predicted membrane protein/predicted membrane protein GTGACATTTGTCAT 3 3 2145873 175 CDS b2069 predicted chaperone ACGACGATGAAACG 3 3 2159276 -212 CDS b2077 multidrug efflux system protein TGACTACCCTGGCG 3 5 2165138 0 NC sRNA effector of ompX mRNA instability, cAMP-induced 3B hfq- GCTGAAAAACATAA 3 7 dependent 2184935 -47 CDS b2107 predicted protein AGGAAAGATATGCG 3 4 2192291 -31 CDS b2114 methionyl-tRNA synthetase CCCTTTTCACTATT 3 8 2212711 -177 CDS b2127 DNA-binding transcriptional regulator CTGCGTTTAACTTT 3 8 2230872 -28 CDS b2144 predicted protein GAAATTTTCCTTAG 3 1 2263442 -30 CDS b2171 predicted elongtion factor TTTGACATTTTCGA 3 4 2264236 -31 CDS b2172 predicted dehydrogenase, NAD-dependent GTTAATTAATCGTT 3 8 2265820 -31 CDS b2173 predicted enzyme AGTTAACTTACCAG 3 4 2267942 -59 CDS b2175 predicted peptidase, outer membrane lipoprotein GCTTGGCATTTTTT 3 7 2267996 -5 CDS b2175 predicted peptidase, outer membrane lipoprotein ACAACATGGTCAAA 3 2 2271987 -214 CDS b2178 predicted oligopeptide transporter subunit AAAATTACTGCCGT 3 1 2342780 -107 CDS b2234 ribonucleoside diphosphate reductase 1, alpha subunit AATCCCAAACATAC 3 7 2350615 -54 CDS b2241 sn-glycerol-3-phosphate dehydrogenase (anaerobic), large subunit, ATTCATGTTTTTAC 3 4 FAD/NAD(P)-binding 2367400 -640 CDS b2256 conserved protein ACCATTCTAATTTA 3 3 2464558 -9 CDS b2349 CPS-53 (KpLE1) prophage 3B predicted prophage CPS-53 integrase TTTTTACCCATGCT 3 9 2493621 -46 CDS b2378 palmitoleoyl-acyl carrier protein (ACP)-dependent acyltransferase ATGGAATCTTCTGC 3 5 2496668 -25 CDS b2380 predicted sensory kinase in two-component system with YpdB GTTTAATCCTTATT 3 5 2499128 -24 CDS b2382 predicted DNA-binding protein ATGCATCTTTAATC 3 4 2507477 -175 CDS b2389 predicted ion channel protein AATTCTTTCTCACA 3 1 2511000 -64 CDS b2393 nucleoside (except guanosine) transporter TTTCCTTAACCATG 3 8 2511032 -32 CDS b2393 nucleoside (except guanosine) transporter GAAATTTAACCTGC 3 1 2529446 -39 CDS b2413 predicted inner membrane protein AATTTTCCTGGGAT 3 1 2531754 -32 CDS b2415 phosphohistidinoprotein-hexose phosphotransferase component of PTS ACAACACTAAACCT 3 3 system (Hpr) 2531761 -25 CDS b2415 phosphohistidinoprotein-hexose phosphotransferase component of PTS TAAACCTATAAGTT 3 9 system (Hpr) 2543763 -32 CDS b2428 predicted PTS component TTATTTGATCGTAA 3 7 2550264 -110 CDS b2435 N-acetylmuramoyl-l-alanine amidase I GTTGTCAACTATTG 3 7 2562517 -28 CDS b2450 CPZ-55 prophage 3B predicted protein GGATTCTATGAGAT 3 2 2576664 -24 CDS b2464 transaldolase A TTTACTTTTCAAGG 3 3 2598450 -50 CDS b2480 thiol peroxidase, thioredoxin-dependent ATTAACGTCGTCAA 3 3 2627785 -29 CDS b2505 predicted outer membrane lipoprotein ATTTTTCGTAATGT 3 9 2632219 -35 CDS b2509 exonuclease VII, large subunit AATAACCTGCTGAT 3 3 2666220 -834 CDS b2538 3-phenylpropionate dioxygenase, large (alpha) subunit GCCCACCAGATTCA 3 7 2680827 -58 CDS b2550 predicted DNA-binding transcriptional regulator AATCTGGCAATGTT 3 9 2708414 -28 CDS b2574 quinolinate synthase, L-aspartate oxidase (B protein) subunit ACCATGTTTAGTAA 3 3 2714752 -24 CDS b2580 uracil-DNA-glycosylase ATTGAAGATTCGCA 3 4 2716697 -60 CDS b2582 thioredoxin 2 ATATTAGAAACATA 3 8 2720643 -106 CDS b2585 phosphatidylserine synthase (CDP-diacylglycerol-serine O- ACTGGAAATGTTGA 3 7 phosphatidyltransferase) 2720648 -101 CDS b2585 phosphatidylserine synthase (CDP-diacylglycerol-serine O- AAATGTTGACCACT 3 2 phosphatidyltransferase) 2748759 -94 CDS b2615 NAD kinase TCTCGCTAACTTCG 3 7 2749782 -35 CDS b2616 recombination and repair protein ATAACAGTAATGGT 3 3 2751616 -11 CDS b2617 small membrane lipoprotein ATCAAATCACTATG 3 8 2753615 0 NC ncRNA 52 tmRNA GGGGCTGATTCTGG 3 7 2756635 -31 CDS b2624 CP4-57 prophage 3B DNA-binding transcriptional activator AACCAAAGTGAACC 3 4 2798143 -13 CDS b2672 predicted protein ACATCGAATTCTAA 3 7 2802771 -66 CDS b2677 glycine betaine transporter subunit GAAAAAAGTGACTA 3 4 2807710 71 CDS b2682 predicted transporter GATTGTTATTAGTT 3 1 2808768 -24 CDS b2684 DNA-binding transcriptional repressor of microcin B17 synthesis and TGAAATTAATGAGG 3 2 multidrug efflux 2850757 -519 CDS b2730 carbamoyl phosphate phosphatase, hydrogenase 3 maturation protein TCACGTCAGTATGG 3 7 2865777 2654 CDS b2740 predicted transporter CAGCATTGTGTCGT 3 1 2923341 -29 CDS b2794 7-cyano-7-deazaguanine reductase (NADPH-dependent) TTAGTTTATCTGGT 3 2 2924294 -36 CDS b2795 conserved protein AGGGAATGACGATA 3 8 2926172 -79 CDS b2796 predicted serine transporter TTTCATTTTTACGG 3 4 2926178 -73 CDS b2796 predicted serine transporter TTTTACGGTCAGGC 3 4 2968416 -26 CDS b2832 predicted inner membrane protein TTCATTTTTTTGGC 3 3 2983673 -196 CDS b2845 predicted transporter AATTGTTTAAAAAA 3 1 2998296 -71 CDS b2866 xanthine dehydrogenase, molybdenum binding subunit AAGAACCAAATGTT 3 9 3053781 147 CDS b2910 protein that localizes to the cytokinetic ring ACTGAACAGTTGGT 3 5 3053880 -125 NC 6S sRNA ATTCGGATGCTGCA 3 6 3057743 -32 CDS b2916 DNA-binding transcriptional activator, replication initiation GAAAAAGCATTTAC 3 5 inhibitor 3079905 -30 CDS b2936 predicted peptidase ATAATCCTGACCTT 3 3 3084589 -139 CDS b2942 methionine adenosyltransferase 1 CCAGATGTTAATCC 3 4 3084613 -115 CDS b2942 methionine adenosyltransferase 1 ATTAACACTCAGAC 3 4 3101011 -24 CDS b2961 adenine DNA glycosylase CCAACAACAGTGAA 3 6 3101024 -11 CDS b2961 adenine DNA glycosylase ATTCGGTGACCATG 3 8 3119402 22 NC ncRNA 61 C0719 AACAGTACGCCGCT 3 1 3128104 -96 CDS b2982 IS5 transposase and trans-activator TTTGGATCGTCGGG 3 5 3145884 -35 CDS b3001 aldo-keto reductase ATTGTTTCGAAATT 3 9 3153325 -52 CDS b3011 alcohol dehydrogenase, NAD(P)-dependent ATCAGGCAGATCGT 3 9 3167822 -28 CDS b3025 DNA-binding response regulator in two-component regulatory system CAAATACGGTTATC 3 5 with QseC 3178893 450 CDS b3038 predicted enzyme TTTAACAGTCTGCA 3 4 3178902 459 CDS b3038 predicted enzyme CTGCAAGAAAAACT 3 9 3180472 -100 CDS b3040 zinc transporter ATACGCTTGTTCGG 3 2 3199068 -161 CDS b3055 predicted signal transduction protein (SH3 domain) TTTGCGCCAAATTG 3 8 3202677 -39 CDS b3059 conserved inner membrane protein ATTCATCGTTGAAC 3 4 3208669 -134 CDS b3065 30S ribosomal subunit protein S21 TTATAAAAGTCCCT 3 5 3208738 -65 CDS b3065 30S ribosomal subunit protein S21 ACCATTTTGAAATA 3 3 3208740 -63 CDS b3065 30S ribosomal subunit protein S21 CATTTTGAAATAAG 3 1 3208743 -60 CDS b3065 30S ribosomal subunit protein S21 TTTGAAATAAGCTG 3 8 3210489 -580 CDS b3067 RNA polymerase, sigma 70 (sigma D) factor TTATAGGGTTGCTG 3 4 3237885 -81 CDS b3089 sodium:serine/threonine symporter GCAAACACTTTGTT 3 4 3243045 -81 CDS b3093 hexuronate transporter CGGAATGCAAATTG 3 8 3248592 8 CDS b3101 predicted quinol oxidase subunit ATTAGAAGATGTTG 3 5 3281839 -353 CDS b3138 N-acetylgalactosamine-specific enzyme IIB component of PTS CGTCACAAAAGTGA 3 7 3285425 -23 CDS b3142 predicted fimbrial-like adhesin protein TTGTTACAAGGATA 3 8 3293818 -13 CDS b3149 DnaA initiator-associating factor for replication initiation TTTAAGGATTAGCG 3 4 3301434 -36 CDS b3160 predicted enzyme AGTATTAAAGATTA 3 7 3331658 -74 CDS b3187 octaprenyl diphosphate synthase ATATTCCTAACCAT 3 9 3341390 -12 CDS b3200 periplasmic LPS-binding protein TTAGAACATCCTAT 3 4 3342713 -26 CDS b3202 RNA polymerase, sigma 54 (sigma N) factor TTTAGCAGGAGAGT 3 9 3348610 11 NC ncRNA 69 SraH AAAACAGTGCTGTG 3 3 3378675 -90 CDS b3234 serine endoprotease, periplasmic TGGTGTCTCATTGT 3 9 3382699 -26 CDS b3237 DNA-binding transcriptional dual regulator, L-arginine-binding GTATCAACCACCAT 3 9 3400640 -866 CDS b3253 predicted oxidoreductase, Zn-dependent and NAD(P)-binding CGAAAAAGAGTCGG 3 6 3403474 16 CDS b3255 acetyl CoA carboxylase, BCCP subunit TTAAAAAACTGATC 3 5 3405256 -141 CDS b3257 conserved inner membrane protein CTGGAGAAAAAACT 3 9 3408270 -32 CDS b3260 tRNA-dihydrouridine synthase B CTTGCAGTCACAGT 3 9 3475637 -25 CDS b3348 conserved protein GACCATTCGACAAA 3 1 3483071 559 CDS b3355 predicted phosphoribulokinase TGGAAGACTATATC 3 4 3484120 -22 CDS b3357 DNA-binding transcriptional dual regulator TTATAACAGAGGAT 3 9 3491922 -111 CDS b3365 nitrite reductase, large subunit, NAD(P)H-binding ATCAGCAATATACC 3 6 3495774 -76 CDS b3368 fused siroheme synthase 1,3-dimethyluroporphyriongen III GAAAGCGAATCGTC 3 8 dehydrogenase and siroheme ferrochelatase/uroporphyrinogen methyltransferase 3502047 -27 CDS b3375 predicted DNA-binding transcriptional regulator AATTCATTCTTTAT 3 5 3526662 -29 CDS b3399 predicted hydrolase CAAATTGCTTCACT 3 1 3527132 -238 CDS b3400 ribosome-associated heat shock protein Hsp15 CCGAAAGAGGATCA 3 7 3535375 -32 CDS b3407 predicted transcriptional accessory protein TGATTTTTGATCCG 3 2 3535376 -31 CDS b3407 predicted transcriptional accessory protein GATTTTTGATCCGA 3 1 3543655 9 CDS b3414 predicted gluconate transport associated protein ATTTCCGATGCTGC 3 7 3544427 -154 CDS b3415 gluconate transporter, high-affinity GNT I system GGGTACCAAACATA 3 8 3559948 -88 CDS b3426 sn-glycerol-3-phosphate dehydrogenase, aerobic, FAD/NAD(P)-binding TTTTTCAATGTTAC 3 7 3560011 -25 CDS b3426 sn-glycerol-3-phosphate dehydrogenase, aerobic, FAD/NAD(P)-binding TTTAACGAAAGTGA 3 7 3572952 -142 CDS b3434 predicted antibiotic transporter TCTTGGCACATCTT 3 9 3579134 -27 CDS b3441 predicted acetyltransferase GACATTTACCCCAA 3 1 3590459 5493 CDS b3448 conserved protein ATAGTAAGGTGTCA 3 5 3590461 5495 CDS b3448 conserved protein AGTAAGGTGTCAGA 3 3 3602350 -66 CDS b3465 16S rRNA m(2)G966 methyltransferase, SAM-dependent ATCACTTAACTTAA 3 7 3604445 -29 CDS b3469 zinc, cobalt and lead efflux system AATGAGAAAAAACT 3 9 3607248 8 CDS b3471 conserved inner membrane protein TTTCTCGCAAACTC 3 8 3609865 -23 CDS b3474 predicted inner membrane protein CAAAAAGTCACAAG 3 3 3610784 -208 CDS b3475 holo-(acyl carrier protein) synthase 2 GTTAATTTGGGGAT 3 3 3638007 -127 CDS b3495 universal stress global response regulator GGTCTTAACACTGA 3 7 3644298 -24 CDS b3500 glutathione oxidoreductase AATCAACGATAAGG 3 5 3648138 -122 CDS b3503 arsenate reductase ATATGACTATCAGC 3 5 3654983 -35 CDS b3511 acid-resistance membrane protein AGGGGATTTTCTTC 3 5 3655002 -16 CDS b3511 acid-resistance membrane protein TTTATAGGGTGGTT 3 5 3656322 -67 CDS b3512 DNA-binding transcriptional activator TTCGGACAAGGATG 3 8 3664096 1209 NC sRNA regulator of gadAB transcriptional activator GadX mRNA ATCAACACGATGAA 3 6 3677415 -27 CDS b3526 ketodeoxygluconokinase AATTTTTTACAGAT 3 1 3694420 -61 CDS b3536 conserved protein TCAATGGTAGGTTT 3 3 3717461 -40 CDS b3555 predicted transcriptional regulator TGCAATTCACGATC 3 8 3717466 -35 CDS b3555 predicted transcriptional regulator TTCACGATCCCGCA 3 3 3718038 -34 CDS b3556 major cold shock protein GAAAGGCACACTTA 3 7 3737697 -31 CDS b3572 valine-pyruvate aminotransferase CCTTGCTACAGAGT 3 9 3764190 -170 CDS b3594 lyase containing HEAT-repeat AGATTCTGGAGTGA 3 2 3764321 -39 CDS b3594 lyase containing HEAT-repeat AAACGATAAAAAAA 3 2 3764326 -34 CDS b3594 lyase containing HEAT-repeat ATAAAAAAAGATAG 3 7 3764936 -308 CDS b3595 pseudogene ATTAGGGATTGTTT 3 7 3772421 -26 CDS b3600 mannitol-1-phosphate dehydrogenase, NAD(P)-binding TAAAAACATTGATG 3 4 3783250 -33 CDS b3612 phosphoglycero mutase III, -independent CAAATTTTGACTCT 3 1 3783260 -23 CDS b3612 phosphoglycero mutase III, cofactor-independent CTCTTGAGTATGAG 3 6 3786063 -61 CDS b3614 predicted polysaccharide deacetylase TTTCGAAATTCGCC 3 5 3815738 -45 CDS b3645 DNA-damage-inducible protein TTACAGATTTACTT 3 4 3819411 -40 CDS b3648 guanylate kinase ATGTAGGCTTTATT 3 4 3819942 -187 CDS b3649 RNA polymerase, omega subunit TTATCTGATTGTGA 3 7 3819946 -183 CDS b3649 RNA polymerase, omega subunit CTGATTGTGAATGA 3 3 3838038 -200 CDS b4555 predicted protein ATTACCTGACTATA 3 8 3842137 150 CDS b3665 cryptic adenine deaminase CCAATTGTGATTAA 3 3 3861646 -276 CDS b3684 predicted DNA-binding transcriptional regulator AATTCTGTAAGTAG 3 1 3882139 -220 CDS b3703 50S ribosomal subunit protein L34 CGGCGCGCCATGCT 3 9 3891875 -29 CDS b3712 predicted phosphopantetheinyl transferase ATAATGGACCATTA 3 7 3894698 -99 CDS b3715 predicted hydrolase GTTTGTGAGAGACT 3 9 3946474 365 CDS b3764 conserved protein ATGTCAGTAGTTTC 3 8 3955969 -24 CDS b3774 ketol-acid reductoisomerase, NAD(P)-binding AGCACAACATCACG 3 5 3955987 -6 CDS b3774 ketol-acid reductoisomerase, NAD(P)-binding ATCACCATGGCTAA 3 3 3958673 -27 CDS b3778 DNA helicase and single-stranded DNA-dependent ATPase CCCGTTCGAAGATT 3 8 3964218 -222 CDS b3783 transcription termination factor ATCTTGTAATTTCC 3 7 3980943 -38 CDS b3800 predicted regulator of activity TTAACGTATTGAAG 3 2 3984454 -1 NC sRNA activator of glmS mRNA, Hfq-dependent AGTAGATGCTCATT 3 5 3988975 -201 CDS b3806 adenylate cyclase AGCGCATCTTTCTT 3 5 3989022 -154 CDS b3806 adenylate cyclase GTTTTAGACCATTT 3 7 3989081 -95 CDS b3806 adenylate cyclase TTACCTTTGACATA 3 2 3989090 -86 CDS b3806 adenylate cyclase ACATACGAAATATC 3 8 4010909 -167 CDS b3829 5-methyltetrahydropteroyltriglutamate-homocysteine S- GTAAACATCTGGAC 3 3 methyltransferase 4029153 -31 CDS b3847 proline dipeptidase ACTTAAGGTCAAAA 3 4 4040070 -22 CDS b3858 conserved protein CTCAAGAGTAAGGA 3 4 4040414 -24 CDS b3859 Thr/Ser kinase implicated in Cpx stress response TCGTAATGTTTTCC 3 4 4044962 -27 CDS b3863 fused DNA polymerase I 5 - 3E3 polymerase/3 - 3E5 exonuclease/5 - ATAATCTGATAAAC 3 2 3E3 exonuclease 4047922 0 NC Spot 42 sRNA GTAGGGTACAGAGG 3 2 4095774 15 CDS b3905 DNA-binding transcriptional activator, L-rhamnose-binding AGTGTGGATTTTTT 3 7 4105542 -33 CDS b3916 6-phosphofructokinase I TTTCATTTTGCATT 3 4 4105554 -21 CDS b3916 6-phosphofructokinase I TTCCAAAGTTCAGA 3 4 4126658 -37 CDS b3939 cystathionine gamma-synthase, PLP-dependent TGACATTTCACCGA 3 2 4131834 -24 CDS b3942 catalase/hydroperoxidase HPI(I) AACACTGTAGAGGG 3 1 4152908 -116 CDS b3958 N-acetyl-gamma-glutamylphosphate reductase, NAD(P)-binding ATGCAGTATTTATG 3 4 4156479 -34 CDS b3961 DNA-binding transcriptional dual regulator CGCCATGAACTATC 3 8 4156517 4 CDS b3961 DNA-binding transcriptional dual regulator ATATTCGTGATCTT 3 9 4159117 -30 CDS b3963 DNA-binding transcriptional repressor AGTACTTTTGGCAA 3 3 4173311 -100 tRNA b3976 tRNA-Thr TTTCTTCATCGTGT 3 7 4175236 -145 CDS b3981 preprotein translocase membrane subunit ATCAGTGATTTTCT 3 7 4179201 -67 CDS b3987 RNA polymerase, beta subunit ATAGTGTTGCACAA 3 2 4194721 -205 CDS b3996 NADH pyrophosphatase AACCAGATTGTAGT 3 4 4195747 8 CDS b3997 uroporphyrinogen decarboxylase ACTTAAAAACGATC 3 8 4198199 -105 CDS b4000 HU, DNA-binding transcriptional regulator, alpha subunit GCGAAAAAAAGTGG 3 7 4201161 -182 CDS b4004 fused DNA-binding response regulator in two-component regulatory CTTGATGCCATCTT 3 9 system with ZraS: response regulator/sigma54 interaction protein 4205995 -175 rRNA b4007 16S ribosomal RNA of rrnE operon CTCGCGACAGTGCG 3 6 4213455 -46 CDS b4014 malate synthase A CGTTCACAGTGGGG 3 5 4221807 -44 CDS b4019 homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent GTTGAATTTTTATT 3 5 4221810 -41 CDS b4019 homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent GAATTTTTATTAAA 3 2 4225603 -151 CDS b4020 predicted transporter ATGAAACACTTATA 3 5 4231740 -41 CDS b4025 glucosephosphate isomerase CTTCCAAAGTCACA 3 5 4231763 -18 CDS b4025 glucosephosphate isomerase ATCAGAAGAGTATT 3 6 4245009 202 CDS b4035 fused maltose transport subunit, ATP-binding component of ABC ATGACACTCCGCCA 3 3 superfamily/regulatory protein 4259493 -244 CDS b4049 tRNA-dihydrouridine synthase A AACAAAGTTAACGG 3 3 4268237 -24 CDS b4056 conserved protein GAGAGTTTTATCAA 3 1 4272121 -27 CDS b4059 single-stranded DNA-binding protein GAACGATTTTTTTC 3 2 4275329 -163 CDS b4063 DNA-binding transcriptional dual regulator, Fe-S center for redox- TACATCAATGTTAA 3 7 sensing 4275468 -24 CDS b4063 DNA-binding transcriptional dual regulator, Fe-S center for redox- AGTTAACTTGAGGT 3 4 sensing 4276331 -171 CDS b4064 predicted permease ATAATCGTTTGCTT 3 3 4285560 -227 CDS b4070 nitrite reductase, formate-dependent, cytochrome CTTTGAGGAACATG 3 8 4311290 -83 CDS b4090 ribose 5-phosphate isomerase B/allose 6-phosphate isomerase ATTCATCGATTTTG 3 8 4311337 -36 CDS b4090 ribose 5-phosphate isomerase B/allose 6-phosphate isomerase TTTGATTGTGAAGT 3 4 4328415 -110 CDS b4111 proline/glycine betaine transporter CGCTACGCTTGTTA 3 4 4328430 -95 CDS b4111 proline/glycine betaine transporter AGAGATTGCATCCT 3 2 4339847 -87 CDS b4119 alpha-galactosidase, NAD(P)-binding TTATGGGAATGCTC 3 8 4359542 -7145 CDS b4140 inner membrane protein ATGTTAAGACTGTG 3 6 4368920 -128 CDS b4143 Cpn60 chaperonin GroEL, large subunit of GroESL CTACGGTGTGAAAT 3 2 4368932 -116 CDS b4143 Cpn60 chaperonin GroEL, large subunit of GroESL ATCTGAGAAGATCG 3 7 4368981 -67 CDS b4143 Cpn60 chaperonin GroEL, large subunit of GroESL ATTCTGGCAATTGT 3 9 4373678 -44 CDS b4147 Elongation factor EF-P CATTTTGTGGCTTA 3 1 4374822 -12 RR ncRNA 85 mini-ykkC TCAACCATCAGCTT 3 3 4380464 -202 CDS b4155 predicted lysyl-tRNA synthetase AAGTCTGAAATTTG 3 7 4380642 -24 CDS b4155 predicted lysyl-tRNA synthetase TTGTCAAAAACTGG 3 7 4389584 -43 CDS b4162 oligoribonuclease AATTGTGGATCAAT 3 1 4391960 -129 CDS b4167 predicted carbohydrate kinase AGCCATGCTTGCAG 3 4 4398275 -36 CDS b4172 HF-I, host factor for RNA phage Q beta replication TTCAAAGTACAAAT 3 3 4423048 -93 CDS b4200 30S ribosomal subunit protein S6 GTCATTTTTCAGCC 3 3 4423050 -91 CDS b4200 30S ribosomal subunit protein S6 CATTTTTCAGCCGA 3 1 4426887 -71 CDS b4207 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) GACAAAGTTTTACC 3 3 4426931 -27 CDS b4207 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) ACTTTATACCCTAA 3 7 4434587 -191 CDS b4214 PAPS (adenosine 3 -phosphate 5 -phosphosulfate) 3 (2 ),5 - ATCAGGGACATCCT 3 9 bisphosphate nucleotidase 4434590 -188 CDS b4214 PAPS (adenosine 3 -phosphate 5 -phosphosulfate) 3 (2 ),5 - AGGGACATCCTTTT 3 6 bisphosphate nucleotidase 4440313 -92 CDS b4220 predicted outer membrane protein and surface antigen TTTAGTCTGCTTTT 3 3 4447938 -47 CDS b4227 predicted sugar transporter subunit: periplasmic-binding component GCGAACATCTTTTA 3 3 of ABC superfamily 4455967 -15 CDS b4235 predicted peptidase required for the maturation and secretion of the GAAACTCTCTACAT 3 1 antibiotic peptide MccB17 4457596 83 gene b4236 pseudogene TTTAAAAGTGGTCG 3 4 4465385 -54 RR ncRNA 86 Mg sensor ATAGATGCTACGAA 3 4 4465552 -96 CDS b4242 magnesium transporter TTTAACGTCCCTGC 3 3 4472119 -28 CDS b4251 predicted transcriptional regulator TTTTAACTTTCTGT 3 4 4473418 -42 CDS b4253 predicted protein TTTGTAATGCTTAG 3 6 4476468 -28 CDS b4255 conserved protein ATCGGCAGGACATT 3 9 4505417 197 gene b4562 pseudogene AATACGTAAGCTGA 3 7 4516534 -16 CDS b4294 KpLE2 phage-like element 3B IS1 repressor protein InsA ATTTTAAGGTGCTT 3 5 4567522 501 gene b4338 pseudogene ATTGTGCAGCATCG 3 7 4570371 -66 CDS b4342 pseudogene TTTTCTTTCAAATT 3 9 4570385 -52 CDS b4342 pseudogene AGAAATGTTGTGGG 3 4 4576539 -1319 NC sRNA destabilizing divergent and overlapping symE mRNA ATACTTTTTCTCTG 3 2 4584938 -34 CDS b4351 methylated adenine and cytosine restriction protein GAAAAACATCTACC 3 4 4584955 -17 CDS b4351 methylated adenine and cytosine restriction protein TTCTGCAAGGATGT 3 7 4609175 -244 CDS b4376 periplasmic protein AGTGATGACATTTC 3 7 4609391 -28 CDS b4376 periplasmic protein TTACGAGCAAACAT 3 9 4614203 -1143 CDS b4381 2-deoxyribose-5-phosphate aldolase, NAD(P)-linked AGTGTGATTGTTGA 3 6 4615133 -213 CDS b4381 2-deoxyribose-5-phosphate aldolase, NAD(P)-linked TTTCGTGATGTTCA 3 7 4615243 -103 CDS b4381 2-deoxyribose-5-phosphate aldolase, NAD(P)-linked TTTCCTTAATTGTG 3 8 4615300 -46 CDS b4381 2-deoxyribose-5-phosphate aldolase, NAD(P)-linked CAAACTCGCAAGGT 3 1 4619764 -28 CDS b4385 predicted DNA-binding transcriptional regulator AAGTATCTATTCAC 3 1 4631788 -32 CDS b4395 phosphoglyceromutase 2, co-factor independent ATTAACGTTACAGC 3 3 4636134 -67 CDS b4400 inner membrane protein CTTCACATAGCTTC 3 8 4638666 241 CDS b4402 predicted protein AATGCTAGCTTTCG 3 1