The Artistry of Dinoflagellate Bioluminescence
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Unfolding the Secrets of Coral–Algal Symbiosis
The ISME Journal (2015) 9, 844–856 & 2015 International Society for Microbial Ecology All rights reserved 1751-7362/15 www.nature.com/ismej ORIGINAL ARTICLE Unfolding the secrets of coral–algal symbiosis Nedeljka Rosic1, Edmund Yew Siang Ling2, Chon-Kit Kenneth Chan3, Hong Ching Lee4, Paulina Kaniewska1,5,DavidEdwards3,6,7,SophieDove1,8 and Ove Hoegh-Guldberg1,8,9 1School of Biological Sciences, The University of Queensland, St Lucia, Queensland, Australia; 2University of Queensland Centre for Clinical Research, The University of Queensland, Herston, Queensland, Australia; 3School of Agriculture and Food Sciences, The University of Queensland, St Lucia, Queensland, Australia; 4The Kinghorn Cancer Centre, Garvan Institute of Medical Research, Sydney, New South Wales, Australia; 5Australian Institute of Marine Science, Townsville, Queensland, Australia; 6School of Plant Biology, University of Western Australia, Perth, Western Australia, Australia; 7Australian Centre for Plant Functional Genomics, The University of Queensland, St Lucia, Queensland, Australia; 8ARC Centre of Excellence for Coral Reef Studies, The University of Queensland, St Lucia, Queensland, Australia and 9Global Change Institute and ARC Centre of Excellence for Coral Reef Studies, The University of Queensland, St Lucia, Queensland, Australia Dinoflagellates from the genus Symbiodinium form a mutualistic symbiotic relationship with reef- building corals. Here we applied massively parallel Illumina sequencing to assess genetic similarity and diversity among four phylogenetically diverse dinoflagellate clades (A, B, C and D) that are commonly associated with corals. We obtained more than 30 000 predicted genes for each Symbiodinium clade, with a majority of the aligned transcripts corresponding to sequence data sets of symbiotic dinoflagellates and o2% of sequences having bacterial or other foreign origin. -
Growth and Grazing Rates of the Herbivorous Dinoflagellate Gymnodinium Sp
MARINE ECOLOGY PROGRESS SERIES Published December 16 Mar. Ecol. Prog. Ser. Growth and grazing rates of the herbivorous dinoflagellate Gymnodinium sp. from the open subarctic Pacific Ocean Suzanne L. Strom' School of Oceanography WB-10, University of Washington. Seattle. Washington 98195, USA ABSTRACT: Growth, grazing and cell volume of the small heterotroph~cdinoflagellate Gyrnnodin~um sp. Isolated from the open subarctic Pacific Ocean were measured as a funct~onof food concentration using 2 phytoplankton food species. Growth and lngestlon rates increased asymptotically with Increas- ing phytoplankon food levels, as did grazer cell volume; rates at representative oceanic food levels were high but below maxima. Clearance rates decreased with lncreaslng food levels when Isochrysis galbana was the food source; they increased ~vithlncreaslng food levels when Synechococcus sp. was the food source. There was apparently a grazlng threshold for Ingestion of Synechococcus: below an initial Synechococcus concentration of 20 pgC 1.' ingestion rates on this alga were very low, while above this initial concentratlon Synechococcus was grazed preferent~ally Gross growth efficiency varied between 0.03 and 0.53 (mean 0.21) and was highest at low food concentrations. Results support the hypothesis that heterotrophic d~noflagellatesmay contribute to controlling population increases of small, rap~dly-grow~ngphytoplankton specles even at low oceanic phytoplankton concentrations. INTRODUCTION as Gymnodinium and Gyrodinium is difficult or impos- sible using older preservation and microscopy tech- Heterotrophic dinoflagellates can be a significant niques; experimental emphasis has been on more component of the microzooplankton in marine waters. easily recognizable and collectable microzooplankton In the oceanic realm, Lessard (1984) and Shapiro et al. -
The Planktonic Protist Interactome: Where Do We Stand After a Century of Research?
bioRxiv preprint doi: https://doi.org/10.1101/587352; this version posted May 2, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Bjorbækmo et al., 23.03.2019 – preprint copy - BioRxiv The planktonic protist interactome: where do we stand after a century of research? Marit F. Markussen Bjorbækmo1*, Andreas Evenstad1* and Line Lieblein Røsæg1*, Anders K. Krabberød1**, and Ramiro Logares2,1** 1 University of Oslo, Department of Biosciences, Section for Genetics and Evolutionary Biology (Evogene), Blindernv. 31, N- 0316 Oslo, Norway 2 Institut de Ciències del Mar (CSIC), Passeig Marítim de la Barceloneta, 37-49, ES-08003, Barcelona, Catalonia, Spain * The three authors contributed equally ** Corresponding authors: Ramiro Logares: Institute of Marine Sciences (ICM-CSIC), Passeig Marítim de la Barceloneta 37-49, 08003, Barcelona, Catalonia, Spain. Phone: 34-93-2309500; Fax: 34-93-2309555. [email protected] Anders K. Krabberød: University of Oslo, Department of Biosciences, Section for Genetics and Evolutionary Biology (Evogene), Blindernv. 31, N-0316 Oslo, Norway. Phone +47 22845986, Fax: +47 22854726. [email protected] Abstract Microbial interactions are crucial for Earth ecosystem function, yet our knowledge about them is limited and has so far mainly existed as scattered records. Here, we have surveyed the literature involving planktonic protist interactions and gathered the information in a manually curated Protist Interaction DAtabase (PIDA). In total, we have registered ~2,500 ecological interactions from ~500 publications, spanning the last 150 years. -
(Alveolata) As Inferred from Hsp90 and Actin Phylogenies1
J. Phycol. 40, 341–350 (2004) r 2004 Phycological Society of America DOI: 10.1111/j.1529-8817.2004.03129.x EARLY EVOLUTIONARY HISTORY OF DINOFLAGELLATES AND APICOMPLEXANS (ALVEOLATA) AS INFERRED FROM HSP90 AND ACTIN PHYLOGENIES1 Brian S. Leander2 and Patrick J. Keeling Canadian Institute for Advanced Research, Program in Evolutionary Biology, Departments of Botany and Zoology, University of British Columbia, Vancouver, British Columbia, Canada Three extremely diverse groups of unicellular The Alveolata is one of the most biologically diverse eukaryotes comprise the Alveolata: ciliates, dino- supergroups of eukaryotic microorganisms, consisting flagellates, and apicomplexans. The vast phenotypic of ciliates, dinoflagellates, apicomplexans, and several distances between the three groups along with the minor lineages. Although molecular phylogenies un- enigmatic distribution of plastids and the economic equivocally support the monophyly of alveolates, and medical importance of several representative members of the group share only a few derived species (e.g. Plasmodium, Toxoplasma, Perkinsus, and morphological features, such as distinctive patterns of Pfiesteria) have stimulated a great deal of specula- cortical vesicles (syn. alveoli or amphiesmal vesicles) tion on the early evolutionary history of alveolates. subtending the plasma membrane and presumptive A robust phylogenetic framework for alveolate pinocytotic structures, called ‘‘micropores’’ (Cavalier- diversity will provide the context necessary for Smith 1993, Siddall et al. 1997, Patterson -
Short Term in Vitro Culture of Cryptocaryon Irritans, a Protozoan Parasite of Marine Fishes
魚 病 研 究 Fish Pathology,39(4),175-181,2004.12 2004 The Japanese Society of Fish Pathology Short Term in vitro Culture of Cryptocaryon irritans, a Protozoan Parasite of Marine Fishes Apolinario V. Yambot1,3 and Yen-Ling Song1,2* 1Institute of Zoology, National Taiwan University, Taipei 106, Taiwan, ROC 2Department of Life Science , National Taiwan University, Taipei 106, Taiwan, ROC3 Present address: College of Fisheries-Freshwater Aquaculture Center , Central Luzon State University, Philippines (Received March 19, 2004) ABSTRACT--Attempts were made to cultivate Cryptocaryon irritans in vitro at 23-25℃. Attachment of theronts and subsequent enlargement into trophonts were achieved in two experi ments using strips of trypticase soy agar (TSA, supplemented with 3% NaCl) as an attachment substrate in filtered seawater. In the third experiment, transformation of theronts into trophonts was achieved in an enriched liquid medium composed of 50% filtered seawater, 30% Leibovitz L-15 and 20% fetal calf serum without attachment onto the TSA. Sizes (mean ±SD) of the trophonts, 114.6 ± 57.9 μm to 295.9 ± 130 μm, were from a recorded size range (50 to 700 μm) of the parasite in vivo. Although only limited numbers of theronts (0.28-1.71%) transformed into trophonts, these results showed that the in vitro culture of C. irritans is potentially feasible as evidenced by the enlargement of the trophonts within the in vivo size range using either a solid medium as an attach ment substrate or a liquid medium without attachment. There is a need, however, to determine essential factors that influence the transformation of the trophonts into viable tomonts capable of producing theronts. -
Understanding Bioluminescence in Dinoflagellates—How Far Have We Come?
Microorganisms 2013, 1, 3-25; doi:10.3390/microorganisms1010003 OPEN ACCESS microorganisms ISSN 2076-2607 www.mdpi.com/journal/microorganisms Review Understanding Bioluminescence in Dinoflagellates—How Far Have We Come? Martha Valiadi 1,* and Debora Iglesias-Rodriguez 2 1 Department of Evolutionary Ecology, Max Planck Institute for Evolutionary Biology, August-Thienemann-Strasse, Plӧn 24306, Germany 2 Department of Ecology, Evolution and Marine Biology, University of California Santa Barbara, Santa Barbara, CA 93106, USA; E-Mail: [email protected] * Author to whom correspondence should be addressed; E-Mail: [email protected] or [email protected]; Tel.: +49-4522-763277; Fax: +49-4522-763310. Received: 3 May 2013; in revised form: 20 August 2013 / Accepted: 24 August 2013 / Published: 5 September 2013 Abstract: Some dinoflagellates possess the remarkable genetic, biochemical, and cellular machinery to produce bioluminescence. Bioluminescent species appear to be ubiquitous in surface waters globally and include numerous cosmopolitan and harmful taxa. Nevertheless, bioluminescence remains an enigmatic topic in biology, particularly with regard to the organisms’ lifestyle. In this paper, we review the literature on the cellular mechanisms, molecular evolution, diversity, and ecology of bioluminescence in dinoflagellates, highlighting significant discoveries of the last quarter of a century. We identify significant gaps in our knowledge and conflicting information and propose some important research questions -
Mixotrophic Protists Among Marine Ciliates and Dinoflagellates: Distribution, Physiology and Ecology
FACULTY OF SCIENCE UNIVERSITY OF COPENHAGEN PhD thesis Woraporn Tarangkoon Mixotrophic Protists among Marine Ciliates and Dinoflagellates: Distribution, Physiology and Ecology Academic advisor: Associate Professor Per Juel Hansen Submitted: 29/04/10 Contents List of publications 3 Preface 4 Summary 6 Sammenfating (Danish summary) 8 สรุป (Thai summary) 10 The sections and objectives of the thesis 12 Introduction 14 1) Mixotrophy among marine planktonic protists 14 1.1) The role of light, food concentration and nutrients for 17 the growth of marine mixotrophic planktonic protists 1.2) Importance of marine mixotrophic protists in the 20 planktonic food web 2) Marine symbiont-bearing dinoflagellates 24 2.1) Occurrence of symbionts in the order Dinophysiales 24 2.2) The spatial distribution of symbiont-bearing dinoflagellates in 27 marine waters 2.3) The role of symbionts and phagotrophy in dinoflagellates with symbionts 28 3) Symbiosis and mixotrophy in the marine ciliate genus Mesodinium 30 3.1) Occurrence of symbiosis in Mesodinium spp. 30 3.2) The distribution of marine Mesodinium spp. 30 3.3) The role of symbionts and phagotrophy in marine Mesodinium rubrum 33 and Mesodinium pulex Conclusion and future perspectives 36 References 38 Paper I Paper II Paper III Appendix-Paper IV Appendix-I Lists of publications The thesis consists of the following papers, referred to in the synthesis by their roman numerals. Co-author statements are attached to the thesis (Appendix-I). Paper I Tarangkoon W, Hansen G Hansen PJ (2010) Spatial distribution of symbiont-bearing dinoflagellates in the Indian Ocean in relation to oceanographic regimes. Aquat Microb Ecol 58:197-213. -
Is Chloroplastic Class IIA Aldolase a Marine Enzyme&Quest;
The ISME Journal (2016) 10, 2767–2772 © 2016 International Society for Microbial Ecology All rights reserved 1751-7362/16 www.nature.com/ismej SHORT COMMUNICATION Is chloroplastic class IIA aldolase a marine enzyme? Hitoshi Miyasaka1, Takeru Ogata1, Satoshi Tanaka2, Takeshi Ohama3, Sanae Kano4, Fujiwara Kazuhiro4,7, Shuhei Hayashi1, Shinjiro Yamamoto1, Hiro Takahashi5, Hideyuki Matsuura6 and Kazumasa Hirata6 1Department of Applied Life Science, Sojo University, Kumamoto, Japan; 2The Kansai Electric Power Co., Environmental Research Center, Keihanna-Plaza, Kyoto, Japan; 3School of Environmental Science and Engineering, Kochi University of Technology, Kochi, Japan; 4Chugai Technos Corporation, Hiroshima, Japan; 5Graduate School of Horticulture, Faculty of Horticulture, Chiba University, Chiba, Japan and 6Environmental Biotechnology Laboratory, Graduate School of Pharmaceutical Sciences, Osaka University, Osaka, Japan Expressed sequence tag analyses revealed that two marine Chlorophyceae green algae, Chlamydo- monas sp. W80 and Chlamydomonas sp. HS5, contain genes coding for chloroplastic class IIA aldolase (fructose-1, 6-bisphosphate aldolase: FBA). These genes show robust monophyly with those of the marine Prasinophyceae algae genera Micromonas, Ostreococcus and Bathycoccus, indicating that the acquisition of this gene through horizontal gene transfer by an ancestor of the green algal lineage occurred prior to the divergence of the core chlorophytes (Chlorophyceae and Treboux- iophyceae) and the prasinophytes. The absence of this gene in some freshwater chlorophytes, such as Chlamydomonas reinhardtii, Volvox carteri, Chlorella vulgaris, Chlorella variabilis and Coccomyxa subellipsoidea, can therefore be explained by the loss of this gene somewhere in the evolutionary process. Our survey on the distribution of this gene in genomic and transcriptome databases suggests that this gene occurs almost exclusively in marine algae, with a few exceptions, and as such, we propose that chloroplastic class IIA FBA is a marine environment-adapted enzyme. -
CH28 PROTISTS.Pptx
9/29/14 Biosc 41 Announcements 9/29 Review: History of Life v Quick review followed by lecture quiz (history & v How long ago is Earth thought to have formed? phylogeny) v What is thought to have been the first genetic material? v Lecture: Protists v Are we tetrapods? v Lab: Protozoa (animal-like protists) v Most atmospheric oxygen comes from photosynthesis v Lab exam 1 is Wed! (does not cover today’s lab) § Since many of the first organisms were photosynthetic (i.e. cyanobacteria), a LOT of excess oxygen accumulated (O2 revolution) § Some organisms adapted to use it (aerobic respiration) Review: History of Life Review: Phylogeny v Which organelles are thought to have originated as v Homology is similarity due to shared ancestry endosymbionts? v Analogy is similarity due to convergent evolution v During what event did fossils resembling modern taxa suddenly appear en masse? v A valid clade is monophyletic, meaning it consists of the ancestor taxon and all its descendants v How many mass extinctions seem to have occurred during v A paraphyletic grouping consists of an ancestral species and Earth’s history? Describe one? some, but not all, of the descendants v When is adaptive radiation likely to occur? v A polyphyletic grouping includes distantly related species but does not include their most recent common ancestor v Maximum parsimony assumes the tree requiring the fewest evolutionary events is most likely Quiz 3 (History and Phylogeny) BIOSC 041 1. How long ago is Earth thought to have formed? 2. Why might many organisms have evolved to use aerobic respiration? PROTISTS! Reference: Chapter 28 3. -
A Comparative Study on the Affinities for Inorganic Carbon Uptake, Nitrate and Phosphate Between Marine Diatoms and Dinoflagellates
A comparative study on the affinities for inorganic carbon uptake, nitrate and phosphate between marine diatoms and dinoflagellates Mr. T. (Thomas) Hofman - 11066938 Institute for Biodiversity and Ecosystem Dynamics (IBED) Supervised by: mw. dr. J.H.M. Verspagen Abstract: Eutrophication and increasing atmospheric carbon dioxide concentrations are water quality concerns threatening our drinking water and food supply due to a rise in harmful cyanobacterial and harmful algal blooms. Understanding which factors determine the species distribution of phytoplankton could help to prevent the increase of these blooms in the future. Growth is thought to be limited by the scarcest resource available. As eutrophic waters are, by definition, rich in macronutrients such as nitrate and phosphate, inorganic carbon limitation becomes more significant in population dynamics as a limiting factor. Moreover, due to increased growth rates in eutrophied oceans, inorganic carbon depletes faster. An in silico literature research on the the affinity for phosphate, nitrate and inorganic carbon in marine diatom and dinoflagellate species gave insights in species distribution, based on in vivo uptake kinetics, field measurements and uptake mechanisms of both taxonomic groups. The affinity for nitrate and inorganic carbon was significantly higher dinoflagellates. This difference could explain the species composition in marine environments. According to findings in this research, dinoflagellates are better adapted, based on their affinity for nutrients and inorganic carbon, to oligotrophic and Ci depleted environments. 1. Introduction Phytoplankton blooms can severely decrease water quality, threatening drinking water and food supply. Anthropogenic increase of atmospheric carbon dioxide (CO2) concentrations and nutrient enrichment alter hydrological patterns and strongly influence the duration, frequency and intensity of harmful cyanobacterial blooms (HCB’s) (Visser et al, 2016) and harmful algal blooms (HAB’s) (Smith and Schindler, 2009). -
Novel and Rapidly Diverging Intergenic Sequences Between Tandem Repeats of the Luciferase Genes in Seven Dinoflagellate Species1
J. Phycol. 42, 96–103 (2005) r 2005 Phycological Society of America DOI: 10.1111/j.1529-8817.2005.00165.x NOVEL AND RAPIDLY DIVERGING INTERGENIC SEQUENCES BETWEEN TANDEM REPEATS OF THE LUCIFERASE GENES IN SEVEN DINOFLAGELLATE SPECIES1 Liyun Liu and J. Woodland Hastings2 Department of Molecular and Cellular Biology, Harvard University, 16 Divinity Avenue, Cambridge, Massachusetts 02138, USA Tandemly arranged luciferase genes were previ- Our previous studies of the structure of dinoflagel- ously reported in two dinoflagellates species, but lates genes and their circadian regulation revealed that their intergenic regions were strikingly different several occur in tandemly arranged copies (Le et al. and no canonical promoter sequences were found. 1997, Li and Hastings 1998, Okamoto et al. 2001). Here, we examined the intergenic regions of the Other than for ribosomal genes (Sollner-Webb and luciferase genes of five other dinoflagellate species Tower 1986) and a few protein-coding genes in two along with those of the earlier two. In all cases, the protozoa, Trypanosoma brucei and Babesia bovis (Lee and genes exist in multiple copies and are arranged Van der Ploeg 1997, Suarez et al. 1998), such an ar- tandemly, coding for proteins of similar sizes and rangement is not known in other eukaryotes. Indeed, sequences. However, the 50 untranslated region, 30 it is well known that the dinoflagellate nucleus is very untranslated region, and intergenic regions of the unusual; its envelope remains intact throughout the seven genes differ greatly in length and sequence, cell cycle, with the separation of the chromosomes in except for two stretches that are conserved in the mitosis being carried out by an external mitotic spindle intergenic regions of two pairs of phylogenetically (Taylor 1987). -
Stress-Induced Dinoflagellate Bioluminescence at the Single Cell Level
PHYSICAL REVIEW LETTERS 125, 028102 (2020) Editors' Suggestion Featured in Physics Stress-Induced Dinoflagellate Bioluminescence at the Single Cell Level Maziyar Jalaal ,1 Nico Schramma ,1,2 Antoine Dode ,1,3 H´el`ene de Maleprade ,1 Christophe Raufaste ,1,4 and Raymond E. Goldstein 1,* 1Department of Applied Mathematics and Theoretical Physics, University of Cambridge, Cambridge CB3 0WA, United Kingdom 2Max Planck Institute for Dynamics and Self-Organization, 37077 Göttingen, Germany 3LadHyX, UMR 7646 du CNRS, École polytechnique, 91120 Palaiseau, France 4Universit´e Côte d’Azur, CNRS, Institut de Physique de Nice, CNRS, 06100 Nice, France (Received 18 March 2020; accepted 26 May 2020; published 6 July 2020) One of the characteristic features of many marine dinoflagellates is their bioluminescence, which lights up nighttime breaking waves or seawater sliced by a ship’s prow. While the internal biochemistry of light production by these microorganisms is well established, the manner by which fluid shear or mechanical forces trigger bioluminescence is still poorly understood. We report controlled measurements of the relation between mechanical stress and light production at the single cell level, using high-speed imaging of micropipette-held cells of the marine dinoflagellate Pyrocystis lunula subjected to localized fluid flows or direct indentation. We find a viscoelastic response in which light intensity depends on both the amplitude and rate of deformation, consistent with the action of stretch-activated ion channels. A phenomenological