Protoparvovirus Knocking at the Nuclear Door
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Molecular Analysis of Carnivore Protoparvovirus Detected in White Blood Cells of Naturally Infected Cats
Balboni et al. BMC Veterinary Research (2018) 14:41 DOI 10.1186/s12917-018-1356-9 RESEARCHARTICLE Open Access Molecular analysis of carnivore Protoparvovirus detected in white blood cells of naturally infected cats Andrea Balboni1, Francesca Bassi1, Stefano De Arcangeli1, Rosanna Zobba2, Carla Dedola2, Alberto Alberti2 and Mara Battilani1* Abstract Background: Cats are susceptible to feline panleukopenia virus (FPV) and canine parvovirus (CPV) variants 2a, 2b and 2c. Detection of FPV and CPV variants in apparently healthy cats and their persistence in white blood cells (WBC) and other tissues when neutralising antibodies are simultaneously present, suggest that parvovirus may persist long-term in the tissues of cats post-infection without causing clinical signs. The aim of this study was to screen a population of 54 cats from Sardinia (Italy) for the presence of both FPV and CPV DNA within buffy coat samples using polymerase chain reaction (PCR). The DNA viral load, genetic diversity, phylogeny and antibody titres against parvoviruses were investigated in the positive cats. Results: Carnivore protoparvovirus 1 DNA was detected in nine cats (16.7%). Viral DNA was reassembled to FPV in four cats and to CPV (CPV-2b and 2c) in four cats; one subject showed an unusually high genetic complexity with mixed infection involving FPV and CPV-2c. Antibodies against parvovirus were detected in all subjects which tested positive to DNA parvoviruses. Conclusions: The identification of FPV and CPV DNA in the WBC of asymptomatic cats, despite the presence of specific antibodies against parvoviruses, and the high genetic heterogeneity detected in one sample, confirmed the relevant epidemiological role of cats in parvovirus infection. -
Porcine Parvovirus VP1/VP2 on a Time Series Epitope Mapping: Exploring the Effects of High Hydrostatic Pressure on the Immune Recognition of Antigens
bioRxiv preprint doi: https://doi.org/10.1101/330589; this version posted May 25, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Porcine Parvovirus VP1/VP2 on a Time Series Epitope Mapping: exploring the effects of high hydrostatic pressure on the immune recognition of antigens. Ancelmo Rabelo de Souzaa, Marriam Yamina, Danielle Gavac, Janice Reis Ciacci Zanellac, Maria Sílvia Viccari Gattia, Carlos Francisco Sampaio Bonafea, Daniel Ferreira de Lima Netoa,b* aDepartamento de Bioquímica e Biologia Tecidual e bDepartamento de Genética, Evolução e Bioagentes, Instituto de Biologia, Universidade Estadual de Campinas (UNICAMP), Rua Monteiro Lobato, 255, Cidade Universitária Zeferino Vaz, 13083- 862, Campinas, SP, Brazil. cEmbrapa Suínos e Aves, Laboratório de Virologia de Suínos, 89715-899, Concórdia, SC, Brazil. *Corresponding author: Tel.: +55 19 3521-6229; E-mail: [email protected] bioRxiv preprint doi: https://doi.org/10.1101/330589; this version posted May 25, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. ABSTRACT Porcine parvovirus (PPV) is a DNA virus that causes reproductive failure in gilts and sows, resulting in embryonic and fetal losses worldwide. Epitope mapping of PPV is important for developing new vaccines. In this study, we used spot synthesis analysis for epitope mapping of the capsid proteins of PPV (NADL-2 strain) and correlated the findings with predictive data from immunoinformatics. The virus was exposed to three conditions prior to inoculation in pigs: native (untreated), high hydrostatic pressure (350 MPa for 1 h) at room temperature and high hydrostatic pressure (350 MPa for 1 h) at -18 °C, compared with a commercial vaccine produced using inactivated PPV. -
ICTV Virus Taxonomy Profile: Parvoviridae
ICTV VIRUS TAXONOMY PROFILES Cotmore et al., Journal of General Virology 2019;100:367–368 DOI 10.1099/jgv.0.001212 ICTV ICTV Virus Taxonomy Profile: Parvoviridae Susan F. Cotmore,1,* Mavis Agbandje-McKenna,2 Marta Canuti,3 John A. Chiorini,4 Anna-Maria Eis-Hubinger,5 Joseph Hughes,6 Mario Mietzsch,2 Sejal Modha,6 Mylene Ogliastro,7 Judit J. Penzes, 2 David J. Pintel,8 Jianming Qiu,9 Maria Soderlund-Venermo,10 Peter Tattersall,1,11 Peter Tijssen12 and ICTV Report Consortium Abstract Members of the family Parvoviridae are small, resilient, non-enveloped viruses with linear, single-stranded DNA genomes of 4–6 kb. Viruses in two subfamilies, the Parvovirinae and Densovirinae, are distinguished primarily by their respective ability to infect vertebrates (including humans) versus invertebrates. Being genetically limited, most parvoviruses require actively dividing host cells and are host and/or tissue specific. Some cause diseases, which range from subclinical to lethal. A few require co-infection with helper viruses from other families. This is a summary of the International Committee on Taxonomy of Viruses (ICTV) Report on the Parvoviridae, which is available at www.ictv.global/report/parvoviridae. Table 1. Characteristics of the family Parvoviridae Typical member: human parvovirus B19-J35 G1 (AY386330), species Primate erythroparvovirus 1, genus Erythroparvovirus, subfamily Parvovirinae Virion Small, non-enveloped, T=1 icosahedra, 23–28 nm in diameter Genome Linear, single-stranded DNA of 4–6 kb with short terminal hairpins Replication Rolling hairpin replication, a linear adaptation of rolling circle replication. Dynamic hairpin telomeres prime complementary strand and duplex strand-displacement synthesis; high mutation and recombination rates Translation Capped mRNAs; co-linear ORFs accessed by alternative splicing, non-consensus initiation or leaky scanning Host range Parvovirinae: mammals, birds, reptiles. -
Diversity and Evolution of Viral Pathogen Community in Cave Nectar Bats (Eonycteris Spelaea)
viruses Article Diversity and Evolution of Viral Pathogen Community in Cave Nectar Bats (Eonycteris spelaea) Ian H Mendenhall 1,* , Dolyce Low Hong Wen 1,2, Jayanthi Jayakumar 1, Vithiagaran Gunalan 3, Linfa Wang 1 , Sebastian Mauer-Stroh 3,4 , Yvonne C.F. Su 1 and Gavin J.D. Smith 1,5,6 1 Programme in Emerging Infectious Diseases, Duke-NUS Medical School, Singapore 169857, Singapore; [email protected] (D.L.H.W.); [email protected] (J.J.); [email protected] (L.W.); [email protected] (Y.C.F.S.) [email protected] (G.J.D.S.) 2 NUS Graduate School for Integrative Sciences and Engineering, National University of Singapore, Singapore 119077, Singapore 3 Bioinformatics Institute, Agency for Science, Technology and Research, Singapore 138671, Singapore; [email protected] (V.G.); [email protected] (S.M.-S.) 4 Department of Biological Sciences, National University of Singapore, Singapore 117558, Singapore 5 SingHealth Duke-NUS Global Health Institute, SingHealth Duke-NUS Academic Medical Centre, Singapore 168753, Singapore 6 Duke Global Health Institute, Duke University, Durham, NC 27710, USA * Correspondence: [email protected] Received: 30 January 2019; Accepted: 7 March 2019; Published: 12 March 2019 Abstract: Bats are unique mammals, exhibit distinctive life history traits and have unique immunological approaches to suppression of viral diseases upon infection. High-throughput next-generation sequencing has been used in characterizing the virome of different bat species. The cave nectar bat, Eonycteris spelaea, has a broad geographical range across Southeast Asia, India and southern China, however, little is known about their involvement in virus transmission. -
Diversity and Evolution of Novel Invertebrate DNA Viruses Revealed by Meta-Transcriptomics
viruses Article Diversity and Evolution of Novel Invertebrate DNA Viruses Revealed by Meta-Transcriptomics Ashleigh F. Porter 1, Mang Shi 1, John-Sebastian Eden 1,2 , Yong-Zhen Zhang 3,4 and Edward C. Holmes 1,3,* 1 Marie Bashir Institute for Infectious Diseases and Biosecurity, Charles Perkins Centre, School of Life & Environmental Sciences and Sydney Medical School, The University of Sydney, Sydney, NSW 2006, Australia; [email protected] (A.F.P.); [email protected] (M.S.); [email protected] (J.-S.E.) 2 Centre for Virus Research, Westmead Institute for Medical Research, Westmead, NSW 2145, Australia 3 Shanghai Public Health Clinical Center and School of Public Health, Fudan University, Shanghai 201500, China; [email protected] 4 Department of Zoonosis, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping, Beijing 102206, China * Correspondence: [email protected]; Tel.: +61-2-9351-5591 Received: 17 October 2019; Accepted: 23 November 2019; Published: 25 November 2019 Abstract: DNA viruses comprise a wide array of genome structures and infect diverse host species. To date, most studies of DNA viruses have focused on those with the strongest disease associations. Accordingly, there has been a marked lack of sampling of DNA viruses from invertebrates. Bulk RNA sequencing has resulted in the discovery of a myriad of novel RNA viruses, and herein we used this methodology to identify actively transcribing DNA viruses in meta-transcriptomic libraries of diverse invertebrate species. Our analysis revealed high levels of phylogenetic diversity in DNA viruses, including 13 species from the Parvoviridae, Circoviridae, and Genomoviridae families of single-stranded DNA virus families, and six double-stranded DNA virus species from the Nudiviridae, Polyomaviridae, and Herpesviridae, for which few invertebrate viruses have been identified to date. -
Soybean Thrips (Thysanoptera: Thripidae) Harbor Highly Diverse Populations of Arthropod, Fungal and Plant Viruses
viruses Article Soybean Thrips (Thysanoptera: Thripidae) Harbor Highly Diverse Populations of Arthropod, Fungal and Plant Viruses Thanuja Thekke-Veetil 1, Doris Lagos-Kutz 2 , Nancy K. McCoppin 2, Glen L. Hartman 2 , Hye-Kyoung Ju 3, Hyoun-Sub Lim 3 and Leslie. L. Domier 2,* 1 Department of Crop Sciences, University of Illinois, Urbana, IL 61801, USA; [email protected] 2 Soybean/Maize Germplasm, Pathology, and Genetics Research Unit, United States Department of Agriculture-Agricultural Research Service, Urbana, IL 61801, USA; [email protected] (D.L.-K.); [email protected] (N.K.M.); [email protected] (G.L.H.) 3 Department of Applied Biology, College of Agriculture and Life Sciences, Chungnam National University, Daejeon 300-010, Korea; [email protected] (H.-K.J.); [email protected] (H.-S.L.) * Correspondence: [email protected]; Tel.: +1-217-333-0510 Academic Editor: Eugene V. Ryabov and Robert L. Harrison Received: 5 November 2020; Accepted: 29 November 2020; Published: 1 December 2020 Abstract: Soybean thrips (Neohydatothrips variabilis) are one of the most efficient vectors of soybean vein necrosis virus, which can cause severe necrotic symptoms in sensitive soybean plants. To determine which other viruses are associated with soybean thrips, the metatranscriptome of soybean thrips, collected by the Midwest Suction Trap Network during 2018, was analyzed. Contigs assembled from the data revealed a remarkable diversity of virus-like sequences. Of the 181 virus-like sequences identified, 155 were novel and associated primarily with taxa of arthropod-infecting viruses, but sequences similar to plant and fungus-infecting viruses were also identified. -
And Coinfections with Feline Viral Pathogens in Domestic Cats in Brazil
Ciência Rural,Felis catusSanta gammaherpesvirus Maria, v.48: 03, 1 (FcaGHV1) e20170480, and 2018coinfections with feline viral pathogens http://dx.doi.org/10.1590/0103-8478cr20170480 in domestic cats in Brazil. 1 ISSNe 1678-4596 MICROBIOLOGY Felis catus gammaherpesvirus 1 (FcaGHV1) and coinfections with feline viral pathogens in domestic cats in Brazil Jacqueline Kazue Kurissio1, 2* Marianna Vaz Rodrigues1, 2 Sueli Akemi Taniwaki3 Marcelo de Souza Zanutto4 Claudia Filoni1, 2 Maicon Vinícius Galdino5 João Pessoa Araújo Júnior 1, 2* 1Departamento de Microbiologia e Imunologia, Instituto de Biociências, Faculdade de Medicina Veterinária e Zootecnia (FMVZ), Universidade Estadual Paulista “Júlio de Mesquita Filho” (UNESP), 18618-691, Botucatu, SP, Brasil. 2Instituto de Biotecnologia, Universidade Estadual Paulista “Júlio de Mesquita Filho” (UNESP), Botucatu, SP, Brasil. E-mail: [email protected] 3Departamento de Medicina Veterinária Preventiva e Saúde Animal, Faculdade de Medicina Veterinária e Zootecnia (FMVZ), Universidade de São Paulo (USP), SP, Brasil. 4Departamento de Clínicas Veterinárias, Centro de Ciências Agrárias, Universidade Estadual de Londrina (UEL), Londrina, PR, Brasil. 5Departamento de Bioestatística, Instituto de Biociências, Universidade Estadual Paulista “Júlio de Mesquita Filho” (UNESP), 18618-693, Botucatu, SP, Brasil. ABSTRACT: Felis catus gammaherpesvirus 1 (FcaGHV1) may causes an asymptomatic infection that result in an efficient transmission and subsequently dissemination of the virus in feline population. This study used molecular detection by qPCR (quantitative PCR) based on DNA polymerase gene fragment amplification to evaluate the occurrence of FcaGHV1 and its correlation with other feline viral pathogens, such as Carnivore protoparvovirus 1 (CPPV-1), Felid alphaherpesvirus 1 (FeHV-1), and feline retroviruses such as feline immunodeficiency virus (FIV) and feline leukemia virus (FeLV). -
To the Minister of Infrastructure and Water Management Mrs S. Van Veldhoven-Van Der Meer P.O. Box 20901 2500 EX the Hague Dear M
To the Minister of Infrastructure and Water Management Mrs S. van Veldhoven-van der Meer P.O. Box 20901 2500 EX The Hague DATE 21 March 2018 REFERENCE CGM/180321-01 SUBJECT Advice on the pathogenicity classification of AAVs Dear Mrs Van Veldhoven, Further to a request for advice concerning the dossier IG 18-028_2.8-000 titled ‘Production of and activities involving recombinant adeno-associated virus (AAV) vectors with modified capsids and capsids of wild type AAV serotypes absent from Appendix 4’, submitted by Arthrogen B.V., COGEM hereby notifies you of the following: Summary: COGEM was asked to advise on the pathogenicity classification of five adeno-associated viruses (AAVs): AAV10, AAV11, AAV12, AAVrh10 and AAVpo1. More than 100 AAVs have been isolated from various hosts. AAVs can infect vertebrates, including humans (95% of people have at one time or another been exposed to an AAV). AAVs are dependent on a helper virus to complete their life cycle. In the absence of a helper virus, the AAV genome persists in a latent form in the cell nucleus. So far no mention has been made in the literature of disease symptoms caused by an infection with AAVs. Neither have there been any reports of pathogenicity of AAV10, 11, 12, AAVrh10 or AAVpo1. AAV vectors are regularly used in clinical studies. Given the above information, COGEM recommends assigning AAV10, AAV11, AAV12, AAVrh10 and AAVpo1 as non-pathogenic to pathogenicity class 1. Based on the ubiquity of AAVs and the lack of evidence of pathogenicity, COGEM recommends that all AAVs belonging to the species Adeno-associated dependoparvovirus A and Adeno-associated dependoparvovirus B should be assigned to pathogenicity class 1. -
Carnivore Protoparvovirus 1 Nonstructural Protein 1 (NS1) Gene
Techne ® qPCR test Carnivore protoparvovirus 1 Nonstructural protein 1 (NS1) gene 150 tests For general laboratory and research use only Quantification of Carnivore protoparvovirus 1 genomes. 1 Advanced kit handbook HB10.03.07 Introduction to Carnivore protoparvovirus 1 Carnivore Protoparvovirus 1 is a genus in the virus family Parvoviridae, one of eight genera that contain viruses which infect vertebrate hosts and together make up the subfamily Parvovirinae. The conserved Nonstructural protein 1 (NS1) gene is the target for this genesig® detection kit. Carnivore protoparvovirus 1 is a small, linear, single-stranded DNA virus, with an icosahedral capsid that is non enveloped. The genome ranges from 4-6kb and as 2 open reading frames. 5’ ORF encodes 2 nonstructural proteins (NS1 & NS2) and the 3’ ORF encodes the capsid proteins. Five species are currently recognised, and most of these contain several different named viruses, virus strains, genotypes or serotypes. Due to the wide variety of types available, there are 4 species which prevalence is relatively high and are defined by the encoding for a particular replication protein, NS1 which is at least 85% identical to the protein encoded by other members of the species. Recognised species in genus Protoparvovirus include: Carnivore protoparvovirus 1 (includes canine arvovirus & feline parvovirus) Primate protoparvovirus 1 Rodent protoparvovirus Rodent protoparvovirus 2 (rat parvovirus 1) Ungulate parvovirus 1 (porcine parvovirus) Another virus in this group - Tusavirus 1 - has been reported from humans from Tunisia, Finland, Bhutan and Burkina Faso. Generalised symptoms are lethargy, vomiting, loss of appetite and diarrhoea which can cause dehydration. Carnivore protoparvovirus 1 in cats is known as Feline parvovirus (FPV) and can cause enteritis, panleukopnia and cerebellar ataxia in cats.Carnivore protoparvovirus 1 in dogs is called Canine parvovirus (CPV), can cause intestinal and lifelong cardiac disease in dogs. -
To the Minister for Infrastructure and Water Management Mrs C. Van Nieuwenhuizen-Wijbenga P.O. Box 20901 2500 EX the Hague Dear
To the Minister for Infrastructure and Water Management Mrs C. van Nieuwenhuizen-Wijbenga P.O. Box 20901 2500 EX The Hague DATUM 5 september 2019 KENMERK CGM/190905-01 ONDERWERP Advice 'Generic environmental risk assessment of clinical trials with AAV vectors' Dear Mrs Van Veldhoven, In the past COGEM has issued many advisory reports on gene therapy studies with AAV vectors. Armed with this knowledge, COGEM has drawn up a generic risk assessment for clinical applications of these vectors with the aim of streamlining the authorisation procedure for such trials. Summary: Hundreds of clinical trials have been carried out worldwide in which use was made of viral vectors derived from adeno-associated viruses (AAV). In recent years COGEM has published a large number of advisory reports on such trials, and in all these trials the risks to human health and the environment proved to be negligible. Drawing on these findings, COGEM has prepared a generic environmental risk assessment for clinical applications of AAV vectors. This generic environmental risk assessment can simplify and streamline the authorisation process. AAVs are non-pathogenic viruses that can only replicate in the presence of a helper virus. AAV vectors are stripped of all viral genes except the viral sequences at the ends of the genome, the inverted terminal repeats (ITRs). As a result, the vectors are unable to replicate even in the presence of a helper virus. COGEM therefore concludes that, given the characteristics of the AAV vectors used, the risks to human health and the environment posed by clinical trials with these vectors are negligible. -
An AAV-Based, Room-Temperature Stable, Single Dose COVID-19 Vaccine
bioRxiv preprint doi: https://doi.org/10.1101/2021.01.05.422952; this version posted January 15, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. An AAV-based, room-temperature stable, single dose COVID-19 vaccine Nerea Zabaleta1,2,3,4, Wenlong Dai1,2,3,4, Urja Bhatt1,2,3,4, Jessica A Chichester5, Julio Sanmiguel1,2,3,4, Reynette Estelien1,2,3,4, Kristofer T Michalson5, Cheikh Diop1,2,3,4, Dawid Maciorowski1,2,3,4, Wenbin Qi6, Elissa Hudspeth7, Allison Cucalon1,2,3,4, Cecilia D Dyer5, M. Betina Pampena5,8, James J. Knox9, Regina C LaRocque10,11, Richelle C Charles10,11, Dan Li1,2,3,4, Maya Kim1,2,3,4, Abigail Sheridan1,2,3,4, Nadia Storm12, Rebecca I Johnson12, Jared Feldman13, Blake M Hauser13, Aisling Ryan1,2,3,4, Eric Zinn1,2,3,4, Dione T Kobayashi14, Ruchi Chauhan1,2,3,4, Marion McGlynn5, Edward T Ryan10,11,15, Aaron G Schmidt13,16, Brian Price17, Anna Honko12, Anthony Griffiths12, Sam Yaghmour6, Robert Hodge18, Michael R. Betts5,8, Mason W Freeman19, James M Wilson5, Luk H Vandenberghe1,2,3,4,* 1 Grousbeck Gene Therapy Center, Schepens Eye Research Institute, Mass Eye and Ear, Boston, Massachusetts, USA 2 Ocular Genomics Institute, Department of Ophthalmology, Harvard Medical School, Boston, Massachusetts, USA 3 The Broad Institute of Harvard and MIT, Cambridge, Massachusetts, USA 4 Harvard Stem Cell Institute, Harvard University, Cambridge, Massachusetts, USA 5Gene Therapy Program, Perelman School of Medicine, University -
Specific Detection of Muscovy Duck Parvovirus Infection by Taqman
Wan et al. BMC Veterinary Research (2018) 14:267 https://doi.org/10.1186/s12917-018-1600-3 RESEARCHARTICLE Open Access Specific detection of Muscovy duck parvovirus infection by TaqMan-based real-time PCR assay Chunhe Wan* , Cuiteng Chen, Longfei Cheng, Hongmei Chen, Qiuling Fu, Shaohua Shi, Guanghua Fu, Rongchang Liu and Yu Huang* Abstract Background: Muscovy duck parvovirus (MDPV) causes high mortality and morbidity in Muscovy ducks, with the pathogenesis of the virus still unknown in many respects. Specific MDPV detection is often rife with false positive results because of high identity at the genomic nucleotide level and antigenic similarity with goose parvovirus (GPV). The objective of this study was to develop a sensitive, highly specific, and repeatable TaqMan-based real-time PCR (qPCR) assay for facilitating the molecular detection of MDPV. Results: The specific primers and probe were designed based on the conserved regions within MDPVs, but there was a variation in GPVs of the nonstructural (NS) genes after genetic comparison. After the optimization of qPCR conditions, the detection limit of this qPCR assay was 29.7 copies/μl. The assay was highly specific for the detection of MDPV, and no cross-reactivity was observed with other non-targeted duck-derived pathogens. Intra- and inter-assay variability was less than 2.21%, means a high degree of repeatability. The diagnostic applicability of the qPCR assay was proven that MDPV-positive can be found in cloacal swabs samples, Muscovy duck embryos and newly hatched Muscovy ducklings. Conclusions: Our data provided incidents that MDPV could be possible vertically transmitted from breeder Muscovy ducks to Muscovy ducklings.