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Outline of Angiosperm Phylogeny
Outline of angiosperm phylogeny: orders, families, and representative genera with emphasis on Oregon native plants Priscilla Spears December 2013 The following listing gives an introduction to the phylogenetic classification of the flowering plants that has emerged in recent decades, and which is based on nucleic acid sequences as well as morphological and developmental data. This listing emphasizes temperate families of the Northern Hemisphere and is meant as an overview with examples of Oregon native plants. It includes many exotic genera that are grown in Oregon as ornamentals plus other plants of interest worldwide. The genera that are Oregon natives are printed in a blue font. Genera that are exotics are shown in black, however genera in blue may also contain non-native species. Names separated by a slash are alternatives or else the nomenclature is in flux. When several genera have the same common name, the names are separated by commas. The order of the family names is from the linear listing of families in the APG III report. For further information, see the references on the last page. Basal Angiosperms (ANITA grade) Amborellales Amborellaceae, sole family, the earliest branch of flowering plants, a shrub native to New Caledonia – Amborella Nymphaeales Hydatellaceae – aquatics from Australasia, previously classified as a grass Cabombaceae (water shield – Brasenia, fanwort – Cabomba) Nymphaeaceae (water lilies – Nymphaea; pond lilies – Nuphar) Austrobaileyales Schisandraceae (wild sarsaparilla, star vine – Schisandra; Japanese -
Alphabetical Lists of the Vascular Plant Families with Their Phylogenetic
Colligo 2 (1) : 3-10 BOTANIQUE Alphabetical lists of the vascular plant families with their phylogenetic classification numbers Listes alphabétiques des familles de plantes vasculaires avec leurs numéros de classement phylogénétique FRÉDÉRIC DANET* *Mairie de Lyon, Espaces verts, Jardin botanique, Herbier, 69205 Lyon cedex 01, France - [email protected] Citation : Danet F., 2019. Alphabetical lists of the vascular plant families with their phylogenetic classification numbers. Colligo, 2(1) : 3- 10. https://perma.cc/2WFD-A2A7 KEY-WORDS Angiosperms family arrangement Summary: This paper provides, for herbarium cura- Gymnosperms Classification tors, the alphabetical lists of the recognized families Pteridophytes APG system in pteridophytes, gymnosperms and angiosperms Ferns PPG system with their phylogenetic classification numbers. Lycophytes phylogeny Herbarium MOTS-CLÉS Angiospermes rangement des familles Résumé : Cet article produit, pour les conservateurs Gymnospermes Classification d’herbier, les listes alphabétiques des familles recon- Ptéridophytes système APG nues pour les ptéridophytes, les gymnospermes et Fougères système PPG les angiospermes avec leurs numéros de classement Lycophytes phylogénie phylogénétique. Herbier Introduction These alphabetical lists have been established for the systems of A.-L de Jussieu, A.-P. de Can- The organization of herbarium collections con- dolle, Bentham & Hooker, etc. that are still used sists in arranging the specimens logically to in the management of historical herbaria find and reclassify them easily in the appro- whose original classification is voluntarily pre- priate storage units. In the vascular plant col- served. lections, commonly used methods are systema- Recent classification systems based on molecu- tic classification, alphabetical classification, or lar phylogenies have developed, and herbaria combinations of both. -
Resolution of Deep Angiosperm Phylogeny Using Conserved Nuclear Genes and Estimates of Early Divergence Times
ARTICLE Received 24 Mar 2014 | Accepted 11 Aug 2014 | Published 24 Sep 2014 DOI: 10.1038/ncomms5956 OPEN Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times Liping Zeng1, Qiang Zhang2, Renran Sun1, Hongzhi Kong3, Ning Zhang1,4 & Hong Ma1,5 Angiosperms are the most successful plants and support human livelihood and ecosystems. Angiosperm phylogeny is the foundation of studies of gene function and phenotypic evolution, divergence time estimation and biogeography. The relationship of the five divergent groups of the Mesangiospermae (B99.95% of extant angiosperms) remains uncertain, with multiple hypotheses reported in the literature. Here transcriptome data sets are obtained from 26 species lacking sequenced genomes, representing each of the five groups: eudicots, monocots, magnoliids, Chloranthaceae and Ceratophyllaceae. Phylogenetic analyses using 59 carefully selected low-copy nuclear genes resulted in highly supported relationships: sisterhood of eudicots and a clade containing Chloranthaceae and Ceratophyllaceae, with magnoliids being the next sister group, followed by monocots. Our topology allows a re-examination of the evolutionary patterns of 110 morphological characters. The molecular clock estimates of Mesangiospermae diversification during the late to middle Jurassic correspond well to the origins of some insects, which may have been a factor facilitating early angiosperm radiation. 1 State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, Ministry of Education Key Laboratoryof Biodiversity Sciences and Ecological Engineering, Institute of Plant Biology, Institute of Biodiversity Science, Center for Evolutionary Biology, School of Life Sciences, Fudan University, 220 Handan Road, Yangpu District, Shanghai 200433, China. 2 Guangxi Institute of Botany, Guangxi Zhuang Autonomous Region and the Chinese Academy of Sciences, Guilin 541006, China. -
GENOME EVOLUTION in MONOCOTS a Dissertation
GENOME EVOLUTION IN MONOCOTS A Dissertation Presented to The Faculty of the Graduate School At the University of Missouri In Partial Fulfillment Of the Requirements for the Degree Doctor of Philosophy By Kate L. Hertweck Dr. J. Chris Pires, Dissertation Advisor JULY 2011 The undersigned, appointed by the dean of the Graduate School, have examined the dissertation entitled GENOME EVOLUTION IN MONOCOTS Presented by Kate L. Hertweck A candidate for the degree of Doctor of Philosophy And hereby certify that, in their opinion, it is worthy of acceptance. Dr. J. Chris Pires Dr. Lori Eggert Dr. Candace Galen Dr. Rose‐Marie Muzika ACKNOWLEDGEMENTS I am indebted to many people for their assistance during the course of my graduate education. I would not have derived such a keen understanding of the learning process without the tutelage of Dr. Sandi Abell. Members of the Pires lab provided prolific support in improving lab techniques, computational analysis, greenhouse maintenance, and writing support. Team Monocot, including Dr. Mike Kinney, Dr. Roxi Steele, and Erica Wheeler were particularly helpful, but other lab members working on Brassicaceae (Dr. Zhiyong Xiong, Dr. Maqsood Rehman, Pat Edger, Tatiana Arias, Dustin Mayfield) all provided vital support as well. I am also grateful for the support of a high school student, Cady Anderson, and an undergraduate, Tori Docktor, for their assistance in laboratory procedures. Many people, scientist and otherwise, helped with field collections: Dr. Travis Columbus, Hester Bell, Doug and Judy McGoon, Julie Ketner, Katy Klymus, and William Alexander. Many thanks to Barb Sonderman for taking care of my greenhouse collection of many odd plants brought back from the field. -
ABSTRACTS 117 Systematics Section, BSA / ASPT / IOPB
Systematics Section, BSA / ASPT / IOPB 466 HARDY, CHRISTOPHER R.1,2*, JERROLD I DAVIS1, breeding system. This effectively reproductively isolates the species. ROBERT B. FADEN3, AND DENNIS W. STEVENSON1,2 Previous studies have provided extensive genetic, phylogenetic and 1Bailey Hortorium, Cornell University, Ithaca, NY 14853; 2New York natural selection data which allow for a rare opportunity to now Botanical Garden, Bronx, NY 10458; 3Dept. of Botany, National study and interpret ontogenetic changes as sources of evolutionary Museum of Natural History, Smithsonian Institution, Washington, novelties in floral form. Three populations of M. cardinalis and four DC 20560 populations of M. lewisii (representing both described races) were studied from initiation of floral apex to anthesis using SEM and light Phylogenetics of Cochliostema, Geogenanthus, and microscopy. Allometric analyses were conducted on data derived an undescribed genus (Commelinaceae) using from floral organs. Sympatric populations of the species from morphology and DNA sequence data from 26S, 5S- Yosemite National Park were compared. Calyces of M. lewisii initi- NTS, rbcL, and trnL-F loci ate later than those of M. cardinalis relative to the inner whorls, and sepals are taller and more acute. Relative times of initiation of phylogenetic study was conducted on a group of three small petals, sepals and pistil are similar in both species. Petal shapes dif- genera of neotropical Commelinaceae that exhibit a variety fer between species throughout development. Corolla aperture of unusual floral morphologies and habits. Morphological A shape becomes dorso-ventrally narrow during development of M. characters and DNA sequence data from plastid (rbcL, trnL-F) and lewisii, and laterally narrow in M. -
UC Davis UC Davis Previously Published Works
UC Davis UC Davis Previously Published Works Title Integrating early Cretaceous fossils into the phylogeny of living angiosperms: Anita lines and relatives of Chloranthaceae Permalink https://escholarship.org/uc/item/3bj1s569 Journal International Journal of Plant Sciences, 175(5) ISSN 1058-5893 Authors Doyle, JA Endress, PK Publication Date 2014 DOI 10.1086/675935 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Int. J. Plant Sci. 175(5):555–600. 2014. ᭧ 2014 by The University of Chicago. All rights reserved. 1058-5893/2014/17505-0006$15.00 DOI: 10.1086/675935 INTEGRATING EARLY CRETACEOUS FOSSILS INTO THE PHYLOGENY OF LIVING ANGIOSPERMS: ANITA LINES AND RELATIVES OF CHLORANTHACEAE James A. Doyle1,* and Peter K. Endress† *Department of Evolution and Ecology, University of California, Davis, California 95616, USA; and †Institute of Systematic Botany, University of Zurich, 8008 Zurich, Switzerland Editor: Patrick S. Herendeen Premise of research. Discoveries of fossil flowers in Cretaceous rocks offer improved evidence for rela- tionships with living clades, but for more secure inferences formal phylogenetic analyses are desirable. We extend previous analyses of magnoliids, monocots, and basal eudicots to Aptian, Albian, and Cenomanian fossils related to the basal “ANITA” lines and Chloranthaceae. Methodology. We performed parsimony analyses of a morphological data set of Recent angiosperms and published fossils, with the arrangement of Recent taxa constrained to backbone trees based primarily on molecular data. Pivotal results. Not only Monetianthus (as previously inferred) but also Carpestella is nested within Nymphaeaceae, while Pluricarpellatia may be a stem relative of Cabombaceae or Nymphaeaceae. Anacostia (with Similipollis pollen) is nested within Austrobaileyales. -
Cretaceous Blog
A Quick Look at the Cretaceous World David Lillis – 13 May 2020 e-mail: [email protected] The Extent of the Cretaceous The Cretaceous Period began about 144 million years ago and terminated with the well- known asteroid impact some 66 million years ago. Geologists subdivide it into 12 stages, each defined by particular rock formations, fossils and sediments at a specific locality called the type area. Several of these type areas are located in France (e.g. Cognac, France, is the type area for the Coniacian Stage). These stages lasted for several million years each, and much geological, climatic and evolutionary change took place within each of them. Figure 1 gives the time frames of the twelve Cretaceous stages. Figure 1: The Cretaceous and its twelve stages The Cretaceous stages vary in duration but average somewhat less than seven million years. The Aptian stage has the greatest duration, at about 12 million years; while the shortest stage is the Santonian, at below three million years. The final stage is known as the Maastrichtian (approximately 6.1 million years in duration), the stage that ended with the famous asteroid impact and mass extinction of dinosaurs and other life forms. Significant rock formations or the earliest appearance of particular organisms define both the lower and upper boundaries of these stages. For example, one marker for the base of the Maastrichtrian is the earliest occurrence of a marine mollusc, the ammonite Pachydiscus fresvillensis. 1 Figure 2 shows a fossilised Pachydiscus fresvillensis from Madagascar, dated at about 69 million years. Figure 2: A Pachydiscus fresvillensis fossil, about 69 million years old The Cretaceous lies within the Mesozoic Era, which we can think of as the age of dinosaurs. -
The Ancestral Flower of Angiosperms and Its Early Diversification
The ancestral flower of angiosperms and its early diversification The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Sauquet, H., M. von Balthazar, S. Magallón, J. A. Doyle, P. K. Endress, E. J. Bailes, E. Barroso de Morais, et al. 2017. “The ancestral flower of angiosperms and its early diversification.” Nature Communications 8 (1): 16047. doi:10.1038/ncomms16047. http://dx.doi.org/10.1038/ncomms16047. Published Version doi:10.1038/ncomms16047 Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:34375361 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA ARTICLE Received 1 Nov 2016 | Accepted 18 May 2017 | Published 1 Aug 2017 DOI: 10.1038/ncomms16047 OPEN The ancestral flower of angiosperms and its early diversification Herve´ Sauquet1, Maria von Balthazar2, Susana Magallo´n3, James A. Doyle4, Peter K. Endress5, Emily J. Bailes6, Erica Barroso de Morais5, Kester Bull-Heren˜u7, Laetitia Carrive1, Marion Chartier2, Guillaume Chomicki8, Mario Coiro5, Raphae¨l Cornette9, Juliana H.L. El Ottra10, Cyril Epicoco1, Charles S.P. Foster11, Florian Jabbour9, Agathe Haevermans9, Thomas Haevermans9, Rebeca Herna´ndez3, Stefan A. Little1, Stefan Lo¨fstrand2, Javier A. Luna12, Julien Massoni13, Sophie Nadot1, Susanne Pamperl2, Charlotte Prieu1, Elisabeth Reyes1, Patrı´cia dos Santos14, Kristel M. Schoonderwoerd15, Susanne Sontag2, Anae¨lle Soulebeau9, Yannick Staedler2, Georg F. Tschan16, Amy Wing-Sze Leung17 &Ju¨rg Scho¨nenberger2 Recent advances in molecular phylogenetics and a series of important palaeobotanical dis- coveries have revolutionized our understanding of angiosperm diversification. -
REFERENCIAS BIBLIOGRÁFICAS Colección De Paleobotánica
MINISTERIO DE CIENCIA E INNOVACIÓN REFERENCIAS BIBLIOGRÁFICAS Colección de Paleobotánica ÁLVAREZ RAMIS, C. 1964. Contribución al estudio de la Flora Carbonífera de Tineo (Asturias). Boletín del Instituto de Estudios Asturianos, 9: 163-168. ÁLVAREZ RAMIS, C. 1966. Trabajos sobre la flora del Estefaniense cantabroastúrico. Acta Geológica Hispánica, 1 (2): 19-20. AREITIO y LARRINAGA, A. 1873. Materiales para la flora fósil de España. Anales de la Sociedad española de Historia Natural, 2: 379-383. AREITIO y LARRINAGA, A. 1874. Enumeración de plantas fósiles españolas. Anales de la Sociedad española de Historia Natural, 3: 225-259. BARRÓN, E. 1992. Presencia de Fraxinus excelsior Linné (Oleaceae, Gentianales) en el Mioceno superior de la Depresión Ceretana. Implicaciones tafonómicas y paleoecológicas. Revista Española de paleontología, 7 (2): 101-108. BARRÓN, E. 1993. Taphonomic studies of the plant remains from the Ceretana Basin (Lérida, Spain). Kaupia, 2: 127-132. BARRÓN, E. 1995. Estudio tafonómico y análisis paleoecológico de la macro y microflora miocena de la Cuenca de la Cerdaña. Tesis Doctoral. Facultad de Ciencias Biológicas. Universidad Complutense de Madrid. 714 págs. Láms. I-XXIX. BARRÓN, E. 1996. Caracterización de la familia Betulaceae S. F. Gray (Magnopliophyta) en el Vallesiense (Neógeno) de la Cerdanya (Lleida, España). Treballs del Museu de Geología de Barcelona, 5: 171-211 BARRÓN, E. 1996. Caracterización del género Acer L. en el vallesiense de la Cerdaña (Lérida, España). Boletín Geológico y Minero, 107 (1): 38-54. BARRÓN, E. 1996. El paragénero Daphnogene Unger (Lauraceae) en el Oligoceno de Izarra (Alava). Estudios del Museo de Ciencias Naturales de Alava, 10-11: 45-52. -
Pseudoasterophyllites Cretaceus from the Cenomanian (Cretaceous) of the Czech Republic: a Possible Link Between Chloranthaceae and Ceratophyllum
Zurich Open Repository and Archive University of Zurich Main Library Strickhofstrasse 39 CH-8057 Zurich www.zora.uzh.ch Year: 2016 Pseudoasterophyllites cretaceus from the Cenomanian (Cretaceous) of the Czech Republic: a possible link between Chloranthaceae and Ceratophyllum Kvaček, Jiří ; Doyle, James A ; Endress, Peter K ; Daviero-Gomez, Véronique ; Gomez, Bernard ; Tekleva, Maria Abstract: Pseudoasterophyllites cretaceus from the Cenomanian of Bohemia was recently recognized as an angiosperm by association with stamens containing monosulcate pollen of the Tucanopollis type. New material indicates that the stamens were borne in short spikes, with each stamen subtended by a bract, whereas the carpels were solitary and contained a single pendent, orthotropous ovule. We have inves- tigated the phylogenetic position of Pseudoasterophyllites by including it in a morphological analysis of extant angiosperms using backbone constraint trees that represent the current range of hypotheses on relationships of the five mesangiosperm clades. With a backbone tree in which Chloranthaceae are linked with magnoliids and Ceratophyllum with eudicots, the most parsimonious position of Pseudoasterophyl- lites is sister to Chloranthaceae, but a sister-group relationship to Ceratophyllum is only one step less parsimonious. With a backbone tree in which Chloranthaceae and Ceratophyllum form a clade, Pseu- doasterophyllites is sister to Ceratophyllum, based on derived features shared with both Chloranthaceae and Ceratophyllum plus solitary female flowers (as -
Phylogenetic Analyses of Cretaceous Fossils Related to Chloranthaceae and Their Evolutionary Implications
UC Davis UC Davis Previously Published Works Title Phylogenetic Analyses of Cretaceous Fossils Related to Chloranthaceae and their Evolutionary Implications Permalink https://escholarship.org/uc/item/0d58r5r0 Journal Botanical Review, 84(2) ISSN 0006-8101 Authors Doyle, JA Endress, PK Publication Date 2018-06-01 DOI 10.1007/s12229-018-9197-6 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Phylogenetic Analyses of Cretaceous Fossils Related to Chloranthaceae and their Evolutionary Implications James A. Doyle & Peter K. Endress The Botanical Review ISSN 0006-8101 Volume 84 Number 2 Bot. Rev. (2018) 84:156-202 DOI 10.1007/s12229-018-9197-6 1 23 Your article is protected by copyright and all rights are held exclusively by The New York Botanical Garden. This e-offprint is for personal use only and shall not be self- archived in electronic repositories. If you wish to self-archive your article, please use the accepted manuscript version for posting on your own website. You may further deposit the accepted manuscript version in any repository, provided it is only made publicly available 12 months after official publication or later and provided acknowledgement is given to the original source of publication and a link is inserted to the published article on Springer's website. The link must be accompanied by the following text: "The final publication is available at link.springer.com”. 1 23 Author's personal copy Bot. Rev. (2018) 84:156–202 https://doi.org/10.1007/s12229-018-9197-6 Phylogenetic Analyses of Cretaceous Fossils Related to Chloranthaceae and their Evolutionary Implications James A. -
This Might Be the First Flowering Plant in Earth's History the Plant Grew 125 to 130 Million Years Ago
This Might Be the First Flowering Plant in Earth's History The plant grew 125 to 130 million years ago Indiana University scientist David Dilcher and fellow paleobotanists at research institutes in Europe believe to have found the first flowering plant ever to grow on Earth. Well, either that or at least one of the earliest ever documented. The newly identified species, named Montsechia vidalii and described in a study published in the journal Proceedings of the National Academy of Science this Monday, grew on our planet around 125 to 130 million years ago. Interestingly, it didn't really produce flowers According to David Dilcher and his colleagues, Montsechia vidalii was an aquatic plant, its preferred habitat freshwater lakes in present-day Spain. Based on fossil evidence, the researchers suspect the plant was a dominant species in these bodies of water. What's interesting is that, although an angiosperm, i.e. a fruiting plant, the now extinct Montsechia vidalii did not produce flowers per se. Rather, it managed to form the fruits containing its seeds without having to first bloom. “Montsechia possesses no obvious 'flower parts,' such as petals or nectar-producing structures for attracting insects, and lives out its entire life cycle under water,” researcher David Dilcher said in an interview, as cited by Phys Org. The reason the paleobotanists are describing Montsechia vidalii as one of the earliest flowering plants on Earth - if not the first ever - is because, to biologists, all plants that deliver their seeds inside fruits count as flowering ones. Mind you, the plant has competition to the title David Dilcher and his colleagues might like to think of Montsechia vidalii as the earliest angiosperm ever to grown and breed on Earth, but the fact of the matter is there are other contender to this title.