ISSN 1346-7565 Acta Phytotax. Geobot. 71 (2): 103–128 (2020) doi: 10.18942/apg.201923 A Large-scale Phylogenetic Analysis of Dioscorea (Dioscoreaceae), with Reference to Character Evolution and Subgeneric Recognition 1,* 2 1 3 HIROSHI NODA , JUN YAMASHITA , SHIZUKA FUSE , RACHUN POOMA , 3 1 1 MANOP POOPATH , HIROSHI TOBE AND MINORU N. TAMURA 1Department of Botany, Graduate School of Science, Kyoto University, Kitashirakawa-oiwake-cho, Sakyo-ku, Kyoto 606-8502, Japan. *
[email protected] (author for correspondence); 2Institute of Plant Science and Resources, Okayama University, Chuo 2-20-1, Kurashiki-shi, Okayama 710-0046, Japan; 3The Forest Herbarium, Department of National Parks, Wildlife and Plant Conservation, Chatuchak, Bangkok 10900, Thailand Dioscorea (Dioscoreaceae) is a diverse genus of more than 600 species. To understand relationships and character evolution within the genus, 273 samples from 183 species (including 28 newly sequenced spe- cies) based on four cpDNA regions were analyzed phylogenetically. The phylogenetic tree obtained com- prised eleven well-supported major clades, most of which further consisted of more than two subclades. Comparisons with previously proposed infrageneric taxa (23 to 58 sections and associated ‘genera’) showed that some sections/‘genera’ are monophyletic and others polyphyletic. As in previous studies, ‘D. sect. Stenophora’ was sister to the rest of the genus. The present analyses of character state distribution on the tree confirmed that D‘ . sect. Stenophora’ is characterized by having rhizomes, monosulcate pollen and a diploid chromosome number based on x = 10 (plesiomorphies), whereas the rest of the genus has tubers and bisulcate pollen (apomorphies), but is diverse in regard to chromosome number, stem twining direction, fruit types and seed wing morphology.