Primate Origin of the Cell-Derived Sequences of Simian Sarcoma Virus KEITH C
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JOURNAL OF VIROLOGY, Feb. 1982, p. 721-725 Vol. 41, No. 2 0022-538X/82/020721-05$02.0O/0 Primate Origin of the Cell-Derived Sequences of Simian Sarcoma Virus KEITH C. ROBBINS,* ROBIN L. HILL, AND STUART A. AARONSON Laboratory of Cellular and Molecular Biology, National Cancer Institute, Bethesda, Maryland 20205 Received 4 May 1981/Accepted 14 September 1981 We sought to identify the species of origin of the cell-derived (sis) sequences of simian sarcoma virus. A molecular clone comprised of sis DNA detected related nucleotide sequences at low copy numbers in normal cellular DNAs of species as diverse as humans and quail. The extent of hybridization and degree of base-pair matching with sis DNA were greatest with New World primate DNAs. The thermal denaturation curve midpoints of hybrids formed between sis and woolly monkey DNAs were indistinguishable from homologous sis DNA hybrids, establishing the woolly monkey (Lagothrix spp.) as the source ofsis sequences. In comparative studies, sis was shown to be more conserved among mammalian species than unique-sequence woolly monkey cellular DNA. There was no detectable homology between sis and the cell-derived sequences of other fibro- blast-transforming retroviruses. These findings indicate that sis is likely to be a unique onc gene among transforming retroviruses. Retroviruses that transform cells in tissue Thus, the possibility exists that the SSV(SSAV) culture and induce solid tumors in vivo have complex was horizontally transmitted from been isolated from several vertebrate species. some other source to the woolly monkey in The only known sarcoma virus of primate origin which SSV was initially detected. In the present was initially obtained from a naturally occurring report, we have sought to identify the species of tumor of a woolly monkey (33). The application origin of SSV by examination of the sequence of recombinant DNA techniques to the investi- homology between the SSV cell-derived se- gation of RNA tumor viruses has recently made quences (designated sis) and DNAs of different it possible to clone in biologically active form species. In addition, we have examined the the integrated genome of this virus, designated relationship between sis and the cell-derived simian sarcoma virus (SSV) (26). The full-length sequences of other molecularly cloned trans- linear 5.1-kilobase-pair (kbp) SSV genome has forming retroviruses. been found to contain a 1.0-kbp segment of Previous studies have localized sis at 4.0 to helper virus-unrelated information localized to- 5.0 kbp on the physical map of X-SSV-11 Cl 1, a ward the 3' end with respect to SSV RNA. molecular clone containing the intact SSV Moreover, this genetic information has been genome (26). This region of SSV DNA was shown to be related to DNA sequences present subcloned in pBR322, and the sis insert was nick at low copy numbers within mammalian cellular translated for use as a probe. High-molecular- DNAs (26). Thus, SSV, similarly to other trans- weight cellular DNAs were prepared and treated forming retroviruses characterized to date, has with EcoRI, an endonuclease which did not cut arisen by recombination of a type C helper virus within the sis gene (26). After fractionation by with a host cellular gene. agarose gel electrophoresis, cellular DNA frag- The species from which SSV obtained its ments were blotted onto nitrocellulose filters cellular sequences has not as yet been identified. and hybridized with the sis DNA probe. The sis- The recombinational event that led to its genera- related DNA fragments were readily detected tion may have occurred in the woolly monkey within cellular DNAs of species as diverse as from which SSV was initially isolated. Howev- humans and quail (Fig. 1). Mouse cellular DNA er, simian sarcoma-associated virus (SSAV), the contained a sis-related fragment of around 18 type C helper virus isolated with SSV, is closely kbp, whereas a 16-kbp fragment was detected in related immunologically to several exogenous rat cellular DNA. One fragment of 10 kbp and type C viruses of gibbon apes (20, 28, 35) and two fragments of 8 and 4 kbp were detected in also possesses an unexpectedly high degree of mink and cat cellular DNAs, respectively. Of antigenic relatedness with endogenous viruses note, woolly monkey, gibbon ape, and human of certain Asian rodents (23). SSV is also known cellular DNAs each demonstrated a single sis- to contain some sequences of its helper virus (1). related fragment of around 21 kbp. As each of 721 722 NOTES J. VIROL. 1 2 3 4 5 6 7 8 for hybrids formed between the sis probe and these rodent cellular DNAs were around 12°C kbp lower than the Tm of hybrids formed between the sis probe and X-SSV-11 Cl 1 DNA. Mink and cat cellular DNAs hybridized around 40o of the 2 0 0- No _ w m probe and demonstrated ATm values of 9.2 and 8.7°C, respectively. Primate cellular DNAs ex- 963- hibited greater homology with the sis probe (Table 1). Human, gibbon ape, and rhesus mon- key DNAs hybridized the sis DNA probe to a 6.5 II maximum extent of 50% with ATm values rang- ing from 5.5 to 6.0°C. The highest extents of annealing were exhibited by DNAs of New World primates with values ranging from 56 to 65%. Thus, sis was most closely related to sequences present in New World primates. The 2.2 ATm values of the hybrids formed helped to FIG. 1. Detection of sis-related sequences in unequivocally identify the source of sis se- DNAs of different vertebrate species. High-molecular- quences. These values were 3.5 and 1.5°C for weight cellular DNA, prepared by the method de- squirrel and spider monkey DNAs, respectively. scribed by Canaani and Aaronson (10), was treated Findings that the Tm of woolly monkey cellular with EcoRI, fractionated by agarose gel electrophore- DNA-sis DNA hybrids was identical to that of sis, and subjected to Southern blotting analysis by homologous sis DNA hybrids (Table 1) demon- using conditions previously reported (26). The sis strated that sis arose from within the woolly DNA fragment located from 4.0 to 5.0 kbp on the monkey genome. restriction map of X-SSV-11 Cl 1 DNA (26), was nick To compare evolutionary conservation of sis translated for use as a probe. EcoRI-treated DNAs extracted from QT-6 (24), NIH/3T3 (19), NRK (12), DNA relative to unique-sequence woolly mon- MvlLu (ATCC 64), and FEF (27) cells and woolly key cellular DNA, we examined the ability of monkey fibroblasts (26), gibbon ape spleen, and hu- various mammalian cellular DNAs to hybridize man embryo lung fibroblasts were electrophoresed in a probe comprised of unique woolly monkey lanes 1 to 8, respectively. Reference markers of cellular DNA sequences. The highest extents of HindIII-digested k phage DNA were electrophoresed annealing were exhibited by woolly and spider in parallel. monkey cellular DNAs with values of 100 and 97%, respectively (Table 1). The ATm values the fragments detected in normal cellular DNA indicated the well-matched nature of the hybrids was larger than the 1.0-kbp SSV sis gene, each formed. These results are consistent with the must contain cellular flanking sequences, inter- classification of both species in the same sub- vening sequences, or both. family Atelinae. Squirrel monkey cellular DNA To identify the species from which sis origi- annealed 82% of the probe and demonstrated a nated, we examined the extent of annealing and ATm value of 3.3°C. Cellular DNAs ofOld World thermal denaturation (Tm) of hybrids formed primates hybridized the probe to a lesser extent between different cellular DNAs and labeled sis (around 50%) with ATm values ranging from 6.2 DNA. To prepare a single-stranded probe neces- to 7.1°C. There was no significant homology sary for these experiments, 0.25 jig of sis DNA between nonprimate cellular DNAs and woolly was 32P labeled by nick translation (25). The monkey unique-sequence DNA. Since these probe was then heat denatured and hybridized same nonprimate cellular DNAs hybridized as with 300 Fg of SSV(SSAV) RNA. This amount much as 40% of the sis DNA probe, sis appears of RNA was determined to contain a 10-fold to be more conserved among mammalian spe- excess of plus-strand sis sequences. DNA-RNA cies than unique-sequence cellular DNA. hybrids, which contained minus-strand sis Recent findings have indicated that onc genes DNA, were separated from double-stranded sis present in sarcoma viruses independently isolat- DNA hybrids by CsCl gradient centrifugation ed from the same (11, 13, 15, 16, 32) and even (17). RNA was removed from the DNA-RNA from different (2, 4, 5, 30) vertebrate species can hybrid molecules by alkali treatment, and the be genetically related. Thus, the number of remaining single-stranded sis DNA was ethanol cellular genes which have been transduced by precipitated and suspended in water before use. type C viruses in the formation of sarcoma Table 1 shows the extents of annealing of viruses appears to be limited. The availability of different normal cellular DNAs with the single- molecular clones of several avian and mammali- stranded sis DNA probe. Rat and mouse DNAs an sarcoma viruses made it possible to test hybridized to a maximum extent of 23%. The Tm whether their cell-derived genes shared nucleo- VOL. 41, 1982 NOTES 723 TABLE 1. Comparison of the relatedness of sis DNA with DNAs of different mammalian species' Hybridization with: sis DNA Woolly monkeyDNAunique-sequence DNA source Maximum Maximum hybridization ATm (CC) hybridization ATm (°C) (%) (%) New World primate Woolly monkey (Lagothrix spp.) 65 0 100 0 Spider monkey (Ateles spp.) 63 1.5 97 1.1 Squirrel monkey (Saimiri spp.) 56 3.5 82 3.8 Old World primate Gibbon ape (Hylobates lar) 47 5.8 47 6.5 Rhesus (Macaca mulatta) 48 6.0 48 6.2 Human (Homo sapiens) 50 5.5 47 7.1 Carnivore Cat (Felis catus) 40 8.7 5 ND Mink (Mustela vison) 39 9.2 5 ND Rodent Mouse (Mus musculus) 23 11.7 3 ND Rat (Rattus rattus) 23 12.2 3 ND a The sis probe was prepared from a DNA fragment located 4.0 to 5.0 kbp on the restriction map of X-SSV-11 Cl 1 DNA (26).