Gulf Pipefish (Syngnathus Scovelli)
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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
Year 2 Data Summary Report: Nekton of Sarasota Bay and a Comparison of Nekton Community Structure in Adjacent Southwest Florida Estuaries
Year 2 Data Summary Report: Nekton of Sarasota Bay and a Comparison of Nekton Community Structure in Adjacent Southwest Florida Estuaries T.C. MacDonald; E. Weather; R.F. Jones; R.H. McMichael, Jr. Florida Fish and Wildlife Conservation Commission Fish and Wildlife Research Institute 100 Eighth Avenue Southeast St. Petersburg, Florida 33701-5095 Prepared for Sarasota Bay Estuary Program 111 S. Orange Avenue, Suite 200W Sarasota, Florida 34236 June 4, 2012 TABLE OF CONTENTS LIST OF FIGURES ........................................................................................................................................ iii LIST OF TABLES .......................................................................................................................................... v ACKNOWLEDGEMENTS ............................................................................................................................ vii SUMMARY .................................................................................................................................................... ix INTRODUCTION ........................................................................................................................................... 1 METHODS .................................................................................................................................................... 2 Study Area ............................................................................................................................................... -
Andrea RAZ-GUZMÁN1*, Leticia HUIDOBRO2, and Virginia PADILLA3
ACTA ICHTHYOLOGICA ET PISCATORIA (2018) 48 (4): 341–362 DOI: 10.3750/AIEP/02451 AN UPDATED CHECKLIST AND CHARACTERISATION OF THE ICHTHYOFAUNA (ELASMOBRANCHII AND ACTINOPTERYGII) OF THE LAGUNA DE TAMIAHUA, VERACRUZ, MEXICO Andrea RAZ-GUZMÁN1*, Leticia HUIDOBRO2, and Virginia PADILLA3 1 Posgrado en Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Ciudad de México 2 Instituto Nacional de Pesca y Acuacultura, SAGARPA, Ciudad de México 3 Facultad de Ciencias, Universidad Nacional Autónoma de México, Ciudad de México Raz-Guzmán A., Huidobro L., Padilla V. 2018. An updated checklist and characterisation of the ichthyofauna (Elasmobranchii and Actinopterygii) of the Laguna de Tamiahua, Veracruz, Mexico. Acta Ichthyol. Piscat. 48 (4): 341–362. Background. Laguna de Tamiahua is ecologically and economically important as a nursery area that favours the recruitment of species that sustain traditional fisheries. It has been studied previously, though not throughout its whole area, and considering the variety of habitats that sustain these fisheries, as well as an increase in population growth that impacts the system. The objectives of this study were to present an updated list of fish species, data on special status, new records, commercial importance, dominance, density, ecotic position, and the spatial and temporal distribution of species in the lagoon, together with a comparison of Tamiahua with 14 other Gulf of Mexico lagoons. Materials and methods. Fish were collected in August and December 1996 with a Renfro beam net and an otter trawl from different habitats throughout the lagoon. The species were identified, classified in relation to special status, new records, commercial importance, density, dominance, ecotic position, and spatial distribution patterns. -
Early Stages of Fishes in the Western North Atlantic Ocean Volume
ISBN 0-9689167-4-x Early Stages of Fishes in the Western North Atlantic Ocean (Davis Strait, Southern Greenland and Flemish Cap to Cape Hatteras) Volume One Acipenseriformes through Syngnathiformes Michael P. Fahay ii Early Stages of Fishes in the Western North Atlantic Ocean iii Dedication This monograph is dedicated to those highly skilled larval fish illustrators whose talents and efforts have greatly facilitated the study of fish ontogeny. The works of many of those fine illustrators grace these pages. iv Early Stages of Fishes in the Western North Atlantic Ocean v Preface The contents of this monograph are a revision and update of an earlier atlas describing the eggs and larvae of western Atlantic marine fishes occurring between the Scotian Shelf and Cape Hatteras, North Carolina (Fahay, 1983). The three-fold increase in the total num- ber of species covered in the current compilation is the result of both a larger study area and a recent increase in published ontogenetic studies of fishes by many authors and students of the morphology of early stages of marine fishes. It is a tribute to the efforts of those authors that the ontogeny of greater than 70% of species known from the western North Atlantic Ocean is now well described. Michael Fahay 241 Sabino Road West Bath, Maine 04530 U.S.A. vi Acknowledgements I greatly appreciate the help provided by a number of very knowledgeable friends and colleagues dur- ing the preparation of this monograph. Jon Hare undertook a painstakingly critical review of the entire monograph, corrected omissions, inconsistencies, and errors of fact, and made suggestions which markedly improved its organization and presentation. -
Some Questions Concerning the Syngnathidae Brood Pouch
BULLETIN OF MARINE SCIENCE, 49(3): 741-747,1991 SOME QUESTIONS CONCERNING THE SYNGNATHIDAE BROOD POUCH Marie Y. Azzarello ABSTRACT For more than a century the physiological role of the Syngnathidae brood pouch has been the subject of scientific interest and debate. Some of the earliest investigators purported that the highly vascular brood pouch was physiologically adapted for the reception of fertilized eggs and for the sustenance of the embryos (i.e., a "pseudo-placenta"). Others posited that the brood pouch served as an osmoregulatory organ for the developing embryos. To determine whether the primary physiological role of the brood pouch is one of nutrition or osmoreg- ulation, Syngnathus scove/li embryos were removed from the brood pouch at different de- velopmental stages (4.0-13.0 mm TL), placed in sterilized, aerated, artificial seawater hyper- or iso-osmotic to the blood and pouch fluid, to which no nutritive substances were added. In hyperosmotic media 25.7% of the in vitro embryos completed their normal gestation versus 18.7% in iso-osmotic media. These results appear to indicate that the male Syng- nathidae brood pouch serves neither as the primary nutritional source nor as an osmotic buffer for the developing embryos after a length of 4.0 mm TL is achieved. Members of the Syngnathidae manifest atypical reproductive behavior and parental care. Reproduction is ovoviviparous with a complete reversal of the usual maternal and paternal brooding roles. Large telolecithal eggs produced by the female are fertilized by the male the moment they are deposited in his brood pouch. Embryos are then incubated throughout their entire gestation period, which varies depending upon genus and species, in the paternal brood pouch (Gill, 1905; Hubbs, 1943; Breder and Rosen, 1966). -
THE FAMILY SYNGNATHIDAE (PISCES: SYNGNATHIFORMES) of Taiwanl
Bull. Inst. Zool., Academia Sinica 22(1): 67-82 (1983) THE FAMILY SYNGNATHIDAE (PISCES: SYNGNATHIFORMES) OF TAIWANl SIN-CHE LEE Institlile of Zoology, Academia Sinica, Taipei, Taiwan lI5t Republic of China (Received October 12, 1982) Sin-Che Lee (1983) The family Syngnathidae (Pisces: Syngnathiformes) of Tai wan. Bull. Inst. Zool., Academia Sinica 22(1): 67-82. A systematic review of the syn gnathid fishes found in the waters of Taiwan and its adjacent islands documents a total of 22 species in 16 genera. Among them,. Dunckerocampus dactyliophorus, Coelo notus liaspis, Halicampus koilomatodon, Microphis manadensis, Hippichthys heptagon us, H. spidfer, Syngnathus pelagicus, Corythoichthys f!avofasdatus, Solegnathus hardwickii, Haliichthys taeniophorous and Hippocampus erinaceus are new records for the Taiwan area. A family diagnosis. key to genera and species, brief synonyms, diagnosis, remarks and illustrations of each species are given. trimaculatus and both H. kelloggi and H. atteri The syngnathids including the pipefishes mus are synonyms of H. kuda. Solegnathus and seahorses are small fishes of tropical and guntheri and Syngnathus argyristictus are pro moderately warm temperate shallow coastal visionally removed from the list since no· data waters. Seahorses are more highly specialized are available. Thus only 8 valid species are than pipefishes but most seahorses are confined remained in Chen's list of Taiwan syngnathids. to marine waters and restricted to particular Neverthless, after a period of intensive collec habitat. On the other hand pipefishes have a tion the present author has found 13 addi wider distribution; they can tolerate greater fional species making a total 21 syngnathid temperature and salinity ranges. -
An Annotated Bibliography of Diet Studies of Fish of the Southeast United States and Gray’S Reef National Marine Sanctuary
Marine Sanctuaries Conservation Series MSD-05-2 An annotated bibliography of diet studies of fish of the southeast United States and Gray’s Reef National Marine Sanctuary U.S. Department of Commerce February 2005 National Oceanic and Atmospheric Administration National Ocean Service Office of Ocean and Coastal Resource Management Marine Sanctuaries Division About the Marine Sanctuaries Conservation Series The National Oceanic and Atmospheric Administration’s Marine Sanctuary Division (MSD) administers the National Marine Sanctuary Program. Its mission is to identify, designate, protect and manage the ecological, recreational, research, educational, historical, and aesthetic resources and qualities of nationally significant coastal and marine areas. The existing marine sanctuaries differ widely in their natural and historical resources and include nearshore and open ocean areas ranging in size from less than one to over 5,000 square miles. Protected habitats include rocky coasts, kelp forests, coral reefs, sea grass beds, estuarine habitats, hard and soft bottom habitats, segments of whale migration routes, and shipwrecks. Because of considerable differences in settings, resources, and threats, each marine sanctuary has a tailored management plan. Conservation, education, research, monitoring and enforcement programs vary accordingly. The integration of these programs is fundamental to marine protected area management. The Marine Sanctuaries Conservation Series reflects and supports this integration by providing a forum for publication and discussion of the complex issues currently facing the National Marine Sanctuary Program. Topics of published reports vary substantially and may include descriptions of educational programs, discussions on resource management issues, and results of scientific research and monitoring projects. The series facilitates integration of natural sciences, socioeconomic and cultural sciences, education, and policy development to accomplish the diverse needs of NOAA’s resource protection mandate. -
Updated Checklist of Marine Fishes (Chordata: Craniata) from Portugal and the Proposed Extension of the Portuguese Continental Shelf
European Journal of Taxonomy 73: 1-73 ISSN 2118-9773 http://dx.doi.org/10.5852/ejt.2014.73 www.europeanjournaloftaxonomy.eu 2014 · Carneiro M. et al. This work is licensed under a Creative Commons Attribution 3.0 License. Monograph urn:lsid:zoobank.org:pub:9A5F217D-8E7B-448A-9CAB-2CCC9CC6F857 Updated checklist of marine fishes (Chordata: Craniata) from Portugal and the proposed extension of the Portuguese continental shelf Miguel CARNEIRO1,5, Rogélia MARTINS2,6, Monica LANDI*,3,7 & Filipe O. COSTA4,8 1,2 DIV-RP (Modelling and Management Fishery Resources Division), Instituto Português do Mar e da Atmosfera, Av. Brasilia 1449-006 Lisboa, Portugal. E-mail: [email protected], [email protected] 3,4 CBMA (Centre of Molecular and Environmental Biology), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal. E-mail: [email protected], [email protected] * corresponding author: [email protected] 5 urn:lsid:zoobank.org:author:90A98A50-327E-4648-9DCE-75709C7A2472 6 urn:lsid:zoobank.org:author:1EB6DE00-9E91-407C-B7C4-34F31F29FD88 7 urn:lsid:zoobank.org:author:6D3AC760-77F2-4CFA-B5C7-665CB07F4CEB 8 urn:lsid:zoobank.org:author:48E53CF3-71C8-403C-BECD-10B20B3C15B4 Abstract. The study of the Portuguese marine ichthyofauna has a long historical tradition, rooted back in the 18th Century. Here we present an annotated checklist of the marine fishes from Portuguese waters, including the area encompassed by the proposed extension of the Portuguese continental shelf and the Economic Exclusive Zone (EEZ). The list is based on historical literature records and taxon occurrence data obtained from natural history collections, together with new revisions and occurrences. -
Reproductive Biology of the Opossum Pipefish, Microphis Brachyurus Lineatus, in Tecolutla Estuary, Veracruz, Mexico
Gulf and Caribbean Research Volume 16 Issue 1 January 2004 Reproductive Biology of the Opossum Pipefish, Microphis brachyurus lineatus, in Tecolutla Estuary, Veracruz, Mexico Martha Edith Miranda-Marure Universidad Nacional Autonoma de Mexico Jose Antonio Martinez-Perez Universidad Nacional Autonoma de Mexico Nancy J. Brown-Peterson University of Southern Mississippi, [email protected] Follow this and additional works at: https://aquila.usm.edu/gcr Part of the Marine Biology Commons Recommended Citation Miranda-Marure, M. E., J. A. Martinez-Perez and N. J. Brown-Peterson. 2004. Reproductive Biology of the Opossum Pipefish, Microphis brachyurus lineatus, in Tecolutla Estuary, Veracruz, Mexico. Gulf and Caribbean Research 16 (1): 101-108. Retrieved from https://aquila.usm.edu/gcr/vol16/iss1/17 DOI: https://doi.org/10.18785/gcr.1601.17 This Article is brought to you for free and open access by The Aquila Digital Community. It has been accepted for inclusion in Gulf and Caribbean Research by an authorized editor of The Aquila Digital Community. For more information, please contact [email protected]. Gulf and Caribbean Research Vol 16, 101–108, 2004 Manuscript received September 25, 2003; accepted December 12, 2003 REPRODUCTIVE BIOLOGY OF THE OPOSSUM PIPEFISH, MICROPHIS BRACHYURUS LINEATUS, IN TECOLUTLA ESTUARY, VERACRUZ, MEXICO Martha Edith Miranda-Marure, José Antonio Martínez-Pérez, and Nancy J. Brown-Peterson1 Laboratorio de Zoología, Universidad Nacional Autónoma de México, Facultad de Estudios Superiores Iztacala. Av., de los Barrios No.1, Los Reyes Iztacala, Tlalnepantla, Estado de México, C.P. 05490 Mexico 1Department of Coastal Sciences, The University of Southern Mississippi, 703 East Beach Drive, Ocean Springs, MS 39564 USA ABSTRACT The reproductive biology of the opossum pipefish, Microphis brachyurus lineatus, was investigated in Tecolutla estuary, Veracruz, Mexico, to determine sex ratio, size at maturity, gonadal and brood pouch histology, reproductive seasonality, and fecundity of this little-known syngnathid. -
The Genome of the Gulf Pipefish Enables Understanding of Evolutionary Innovations C
Small et al. Genome Biology (2016) 17:258 DOI 10.1186/s13059-016-1126-6 RESEARCH Open Access The genome of the Gulf pipefish enables understanding of evolutionary innovations C. M. Small1†, S. Bassham1†, J. Catchen1,2†, A. Amores3, A. M. Fuiten1, R. S. Brown1,4, A. G. Jones5 and W. A. Cresko1* Abstract Background: Evolutionary origins of derived morphologies ultimately stem from changes in protein structure, gene regulation, and gene content. A well-assembled, annotated reference genome is a central resource for pursuing these molecular phenomena underlying phenotypic evolution. We explored the genome of the Gulf pipefish (Syngnathus scovelli), which belongs to family Syngnathidae (pipefishes, seahorses, and seadragons). These fishes have dramatically derived bodies and a remarkable novelty among vertebrates, the male brood pouch. Results: We produce a reference genome, condensed into chromosomes, for the Gulf pipefish. Gene losses and other changes have occurred in pipefish hox and dlx clusters and in the tbx and pitx gene families, candidate mechanisms for the evolution of syngnathid traits, including an elongated axis and the loss of ribs, pelvic fins, and teeth. We measure gene expression changes in pregnant versus non-pregnant brood pouch tissue and characterize the genomic organization of duplicated metalloprotease genes (patristacins) recruited into the function of this novel structure. Phylogenetic inference using ultraconserved sequences provides an alternative hypothesis for the relationship between orders Syngnathiformes and Scombriformes. Comparisons of chromosome structure among percomorphs show that chromosome number in a pipefish ancestor became reduced via chromosomal fusions. Conclusions: The collected findings from this first syngnathid reference genome open a window into the genomic underpinnings of highly derived morphologies, demonstrating that de novo production of high quality and useful reference genomes is within reach of even small research groups. -
Louisiana's Animal Species of Greatest Conservation Need (SGCN)
Louisiana's Animal Species of Greatest Conservation Need (SGCN) ‐ Rare, Threatened, and Endangered Animals ‐ 2020 MOLLUSKS Common Name Scientific Name G‐Rank S‐Rank Federal Status State Status Mucket Actinonaias ligamentina G5 S1 Rayed Creekshell Anodontoides radiatus G3 S2 Western Fanshell Cyprogenia aberti G2G3Q SH Butterfly Ellipsaria lineolata G4G5 S1 Elephant‐ear Elliptio crassidens G5 S3 Spike Elliptio dilatata G5 S2S3 Texas Pigtoe Fusconaia askewi G2G3 S3 Ebonyshell Fusconaia ebena G4G5 S3 Round Pearlshell Glebula rotundata G4G5 S4 Pink Mucket Lampsilis abrupta G2 S1 Endangered Endangered Plain Pocketbook Lampsilis cardium G5 S1 Southern Pocketbook Lampsilis ornata G5 S3 Sandbank Pocketbook Lampsilis satura G2 S2 Fatmucket Lampsilis siliquoidea G5 S2 White Heelsplitter Lasmigona complanata G5 S1 Black Sandshell Ligumia recta G4G5 S1 Louisiana Pearlshell Margaritifera hembeli G1 S1 Threatened Threatened Southern Hickorynut Obovaria jacksoniana G2 S1S2 Hickorynut Obovaria olivaria G4 S1 Alabama Hickorynut Obovaria unicolor G3 S1 Mississippi Pigtoe Pleurobema beadleianum G3 S2 Louisiana Pigtoe Pleurobema riddellii G1G2 S1S2 Pyramid Pigtoe Pleurobema rubrum G2G3 S2 Texas Heelsplitter Potamilus amphichaenus G1G2 SH Fat Pocketbook Potamilus capax G2 S1 Endangered Endangered Inflated Heelsplitter Potamilus inflatus G1G2Q S1 Threatened Threatened Ouachita Kidneyshell Ptychobranchus occidentalis G3G4 S1 Rabbitsfoot Quadrula cylindrica G3G4 S1 Threatened Threatened Monkeyface Quadrula metanevra G4 S1 Southern Creekmussel Strophitus subvexus -
Humboldt Bay Fishes
Humboldt Bay Fishes ><((((º>`·._ .·´¯`·. _ .·´¯`·. ><((((º> ·´¯`·._.·´¯`·.. ><((((º>`·._ .·´¯`·. _ .·´¯`·. ><((((º> Acknowledgements The Humboldt Bay Harbor District would like to offer our sincere thanks and appreciation to the authors and photographers who have allowed us to use their work in this report. Photography and Illustrations We would like to thank the photographers and illustrators who have so graciously donated the use of their images for this publication. Andrey Dolgor Dan Gotshall Polar Research Institute of Marine Sea Challengers, Inc. Fisheries And Oceanography [email protected] [email protected] Michael Lanboeuf Milton Love [email protected] Marine Science Institute [email protected] Stephen Metherell Jacques Moreau [email protected] [email protected] Bernd Ueberschaer Clinton Bauder [email protected] [email protected] Fish descriptions contained in this report are from: Froese, R. and Pauly, D. Editors. 2003 FishBase. Worldwide Web electronic publication. http://www.fishbase.org/ 13 August 2003 Photographer Fish Photographer Bauder, Clinton wolf-eel Gotshall, Daniel W scalyhead sculpin Bauder, Clinton blackeye goby Gotshall, Daniel W speckled sanddab Bauder, Clinton spotted cusk-eel Gotshall, Daniel W. bocaccio Bauder, Clinton tube-snout Gotshall, Daniel W. brown rockfish Gotshall, Daniel W. yellowtail rockfish Flescher, Don american shad Gotshall, Daniel W. dover sole Flescher, Don stripped bass Gotshall, Daniel W. pacific sanddab Gotshall, Daniel W. kelp greenling Garcia-Franco, Mauricio louvar