The Zebrafish Organizer Requires Chordino
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Rapid Effects of Sex Steroids on PGF2 Approach Response in Zebrafish
Rapid effects of sex steroids on PGF2� approach response in zebrafish (Danio rerio) Student Researcher: Leah B. Kratochvil, Advisor: Richmond R. Thompson Bowdoin College Department of Neuroscience Abstract Steroids are molecular messengers that regulate a variety of bodily functions, including behaviors and sexual motivation. Steroids have long been known to induce behavioral effects in days or weeks, but more recently have been discovered to effect these changes within seconds. Research surrounding these so-called “rapid” effects of steroids on sensory systems is lacking. I took advantage of the sophisticated sex pheromone system in zebrafish to study this system, and the male zebrafish approach response to the pre-ovulatory pheromone prostaglandin F2� (PGF2�). Sexually mature male zebrafish were treated with vehicle, T, or 11-ketotestosterone (11-KT) for 40 minutes, and then immediately evaluated for time spent near vehicle or PGF2� administered to their test tank. Initial data suggests that T-treated fish spent more time near the pheromone, indicating that T may rapidly modulate this response in zebrafish. There were no significant differences between treatments. Further investigation, with higher steroid and pheromone concentrations and a slightly different experimental design, is underway to confirm how T and/or 11-KT modulate(s) the male zebrafish approach response to PGF2�. Project Objectives Classically, steroids have been thought to act in the body by binding to intracellular receptors and inducing gene transcription, protein translation and ultimately behavioral responses. However, because this process – termed the “genomic” mechanism due to its interactions with the genome – takes time, these genomic behavioral effects usually take days or weeks to appear. -
L. Lacey Knowles
Curriculum Vitae L. Lacey Knowles Department of Ecology and Evolutionary Biology E-mail: [email protected] Museum of Zoology, University of Michigan Orcid ID: 0000-0002-6567-4853 Ann Arbor, MI 48109-1079 POSITIONS 2015-present, Robert B. Payne Collegiate Professor, Department of Ecology and Evolutionary Biology, Curator of Insects, Museum of Zoology, University of Michigan 2012-2015, Professor, Department of Ecology and Evolutionary Biology, Curator of Insects, Museum of Zoology, University of Michigan 2008-2012, Associate Professor, Department of Ecology and Evolutionary Biology, Curator of Insects, Museum of Zoology, University of Michigan 2003-2008, Assistant Professor, Department of Ecology and Evolutionary Biology, Curator of Insects, Museum of Zoology, University of Michigan ACADEMIC APPOINTMENTS: Science Communication Fellow, Museum of Natural History, University of Michigan Member, Center for statistical Genetics, University of Michigan NIH Training Program in Genome Sciences, University of Michigan EDUCATION 2001-2002 NIH Postdoctoral Fellowship (PERT: Postdoctoral Excellence in Research and Teaching) awarded through the Center for Insect Science at the University of Arizona 1999-2001 Postdoctoral Fellowship from the National Science Foundation Research Training Group in the Analysis of Biological Diversification at the University of Arizona 1999 Ph.D., Ecology and Evolution, State University of New York at Stony Brook Dissertation title: Genealogical portraits of Pleistocene speciation and diversity patterns in montane grasshoppers 1993 M.S., Zoology, University of South Florida. Thesis title: Effects of habitat structure on community assemblages of epifaunal macroinvertebrates in seagrass systems. 1989 B.S., cum laude with honors in Marine Biology, University of North Carolina, Wilmington RESEARCH INTERESTS Speciation and processes that promote divergence Phylogenomics and statistical phylogeography Evolutionary consequences of climate change HONORS AND AWARDS *Fulbright U.S. -
The Effect of Fluoxetine on Self-Control in Betta Splendens
University of Montana ScholarWorks at University of Montana Graduate Student Theses, Dissertations, & Professional Papers Graduate School 2014 The effect of fluoxetine on self-control in betta splendens Kathryn Gwen Lamp The University of Montana Follow this and additional works at: https://scholarworks.umt.edu/etd Let us know how access to this document benefits ou.y Recommended Citation Lamp, Kathryn Gwen, "The effect of fluoxetine on self-control in betta splendens" (2014). Graduate Student Theses, Dissertations, & Professional Papers. 10770. https://scholarworks.umt.edu/etd/10770 This Dissertation is brought to you for free and open access by the Graduate School at ScholarWorks at University of Montana. It has been accepted for inclusion in Graduate Student Theses, Dissertations, & Professional Papers by an authorized administrator of ScholarWorks at University of Montana. For more information, please contact [email protected]. THE EFFECT OF FLUOXETINE ON SELF-CONTROL IN BETTA SPLENDENS by KATHRYN GWEN LAMP Bachelor of Arts, Christopher Newport University, Newport News, VA, 2008 Master of Arts, The University of Montana, Missoula, MT, 2012 Dissertation presented in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Experimental Psychology The University of Montana Missoula, MT June 2014 Approved by: Dr. Allen Szalda-Petree, Chair Department of Psychology Dr. Nabil Haddad Department of Psychology Dr. Stuart Hall Department of Psychology Dr. Jerry Smith Department of Biomedical and Pharmaceutical Sciences Dr. Keith Parker Department of Biomedical and Pharmaceutical Sciences UMI Number: 3628951 All rights reserved INFORMATION TO ALL USERS The quality of this reproduction is dependent upon the quality of the copy submitted. -
Disease and Clinical Signs Poster
African Clawed Frog Xenopus laevis Diseases and Clinical Signs in Photographs Therese Jones-Green University Biomedical Services Abstract Reported clinical signs associated with ill health and Clinical signs found between 2016 to 2018 Many diseases of Xenopus laevis frogs have been described in the • Opened in 2005, the biofacility can hold up to 900 female and 240 disease Clinical signs found between 2016 to 2018 male frogs in a Marine Biotech (now serviced by MBK Installations Ltd.) • 80 recirculating aquatic system. • Buoyancy problems 70 bridge this gap using photographs taken of frogs with clinical signs. The system monitors parameters such as: temperature, pH, • • Changes in activity e.g. lethargy or easily startled. My aims are: conductivity, and Total Gas Pressure. 60 • Unusual amount of skin shedding. 2018 • To share my experiences, via images, to help improve the welfare and • Frogs are maintained on mains fed water with a 20% water exchange. 50 ases • Weight loss, or failure to feed correctly. c husbandry of this species. • 2017 • Coelomic (body cavity) distention. 40 • To stimulate a dialogue which results in further sharing of ideas and 2016 Whole body bloat. 30 information. • Frogs are held under a 12 hour light/dark cycle. • Number of • Each tank has a PVC enrichment tube (30cm x 10cm), with smoothed • Fungal strands/tufts. 20 Introduction cut edges. • Sores or tremors at extremities (forearms and toes). 10 Between January 2016 and October 2018, cases of ill health and disease • Frogs are fed three times a week with a commercial trout pellet. • Redness or red spots. 0 Oedema Red leg Red leg (bad Red leg Gas bubble Sores on forearm Opaque cornea Skeletal Growth (cartilage Scar Cabletie Missing claws Eggbound in a colony of Xenopus laevis frogs housed by the University Biological hormone) (nematodes) disease deformity under skin) • The focus of the research undertaken in the biofacility is embryonic and • Excessive slime/mucous production or not enough (dry dull skin). -
Xenopus for Dummies.Docx
Xenopus for DUMMIES 1 Xenopus for DUMMIES OUTLINE Introduction ........................................................................................................................... 2 1. Why is Xenopus interesting for iGEM? ........................................................................... 4 2. Requirements before planning to work on Xenopus......................................................... 5 3. Guidelines to define an iGEM project with Xenopus ........................................................ 5 4. The micro-injection procedure ........................................................................................ 7 a. Step 1: Fertilized eggs ........................................................................................ 7 b. Step 2: DNA injection .......................................................................................... 7 c. Place the injected embryos in incubator 21°C ..................................................... 8 d. The following days .............................................................................................. 8 e. Embryos injection: efficiency ............................................................................... 8 5. The biobrick plasmids for Xenopus ................................................................................. 9 6. Xenopus debugging tool ............................................................................................... 10 a. How? ................................................................................................................ -
Housing, Husbandry and Welfare of a “Classic” Fish Model, the Paradise Fish (Macropodus Opercularis)
animals Article Housing, Husbandry and Welfare of a “Classic” Fish Model, the Paradise Fish (Macropodus opercularis) Anita Rácz 1,* ,Gábor Adorján 2, Erika Fodor 1, Boglárka Sellyei 3, Mohammed Tolba 4, Ádám Miklósi 5 and Máté Varga 1,* 1 Department of Genetics, ELTE Eötvös Loránd University, Pázmány Péter stny. 1C, 1117 Budapest, Hungary; [email protected] 2 Budapest Zoo, Állatkerti krt. 6-12, H-1146 Budapest, Hungary; [email protected] 3 Fish Pathology and Parasitology Team, Institute for Veterinary Medical Research, Centre for Agricultural Research, Hungária krt. 21, 1143 Budapest, Hungary; [email protected] 4 Department of Zoology, Faculty of Science, Helwan University, Helwan 11795, Egypt; [email protected] 5 Department of Ethology, ELTE Eötvös Loránd University, Pázmány Péter stny. 1C, 1117 Budapest, Hungary; [email protected] * Correspondence: [email protected] (A.R.); [email protected] (M.V.) Simple Summary: Paradise fish (Macropodus opercularis) has been a favored subject of behavioral research during the last decades of the 20th century. Lately, however, with a massively expanding genetic toolkit and a well annotated, fully sequenced genome, zebrafish (Danio rerio) became a central model of recent behavioral research. But, as the zebrafish behavioral repertoire is less complex than that of the paradise fish, the focus on zebrafish is a compromise. With the advent of novel methodologies, we think it is time to bring back paradise fish and develop it into a modern model of Citation: Rácz, A.; Adorján, G.; behavioral and evolutionary developmental biology (evo-devo) studies. The first step is to define the Fodor, E.; Sellyei, B.; Tolba, M.; housing and husbandry conditions that can make a paradise fish a relevant and trustworthy model. -
Association of DNA with Nuclear Matrix in in Vitro Assembled Nuclei
Cell Research (1997), 7, 107-117 Association of DNA with nuclear matrix in in vitro as- sembled nuclei induced by rDNA from Tetrahymena shang- haiensis in Xenopus egg extracts CHEN YING, BO ZHANG, XIU FEN LI, ZHONG HE ZHAI Department of Cell Biology and Genetics, College of Life Sciences, Peking University, Beijing 100871 ABSTRACT The nuclei assembled from exogenous DNA or chro- matin in egg extracts resemble their in vivo counterparts in many aspects. However, the distribution pattern of DNA in these nuclei remains unknown. We introduced rDNA from the macronuclei of Tetrahymena into Xenopus cell- free extracts to examine the association of specific DNA sequences with nuclear matrix (NM) in the nuclei assem- bled in vitro. Our previous works showed the 5'NTS (non- transcription sequences) of the rDNA specifically bind to the NM system in the macronuclei. We show now the rDNA could induce chromatin assembly and nuclear for- mation in Xenopus cell-free system. When we extracted the NM system and compared the binding affinity of differ- ent regions of rDNA with the NM system, we found that the 5'NTS still hold their binding affinity with insoluble structure of the assembled nuclei in the extracts of Xeno- pus eggs. Key words: Nuclear assembly, nuclear matrix, Xeno- pus egg extracts, Tetrahymena rDNA. On the occasion of Professor Lu Ji SHI's (L. C. Sze), eightieth birthday, we present this paper and extend our sincere greetings to Professor SHI. As we mentioned in our paper, in early 1950's, it is Professor SHI who first studied the behavior of exogenous homologous desoxyribose nucleoprotein (chromatin) in amphibian eggs. -
Zebrafish Embryos and Bioinformatics: Useful and Marketable Exercises for Students Enrolled in Upper-Level Undergraduate Courses
2019 Eastern Biologist Special Issue 1 Zebrafish as a Model System for Research and Teaching A. Davis, H. Nguyen, and J. Qian 2019 Eastern Biologist Special Issue 1:47–63 Zebrafish Embryos and Bioinformatics: Useful and Marketable Exercises for Students Enrolled in Upper-Level Undergraduate Courses Adam Davis1*, Hong Nguyen1, and Jo Qian1 Abstract - The zebrafish (Danio rerio) is a widely used vertebrate model system in several branches of biological research, including molecular biology, developmental biology, and evolutionary biology. The rapid and transparent development of embryos outside of the mother allows for real- time observation of embryonic development of different types of organ systems. However, the types of wet-lab exercises involving zebrafish embryos that undergraduate students can perform during a 2-3 hour laboratory period are limited. Recent advances in bioinformatics applications and the availability of genomic sequence data from zebrafish and other evolutionarily divergent vertebrates, including human, allow students to be actively involved in semester-long molecular, evolutionary, and developmental biology projects that can be performed both in and out of the laboratory. In this paper, we report several exercises that can be used in upper level undergraduate biology courses that include a 2-3 hour weekly laboratory session. These exercises include amino acid and genomic DNA sequence alignment and gene expression analysis of Hoxa2, a developmental regulatory gene that is highly characterized in its expression and function. All exercises make use of standard operating procedures for training students on new techniques. The exercises presented will provide several learning outcomes for students, including the identification of conserved protein domains and cis- regulatory elements and how mutations to these motifs can lead to evolutionary diversity as well as the development of homeostatic imbalances in humans. -
Enhanced XAO: the Ontology of Xenopus Anatomy And
Segerdell et al. Journal of Biomedical Semantics 2013, 4:31 http://www.jbiomedsem.com/content/4/1/31 JOURNAL OF BIOMEDICAL SEMANTICS RESEARCH Open Access Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase Erik Segerdell1*, Virgilio G Ponferrada2, Christina James-Zorn2, Kevin A Burns2, Joshua D Fortriede2, Wasila M Dahdul3,4, Peter D Vize5 and Aaron M Zorn2 Abstract Background: The African clawed frogs Xenopus laevis and Xenopus tropicalis are prominent animal model organisms. Xenopus research contributes to the understanding of genetic, developmental and molecular mechanisms underlying human disease. The Xenopus Anatomy Ontology (XAO) reflects the anatomy and embryological development of Xenopus. The XAO provides consistent terminology that can be applied to anatomical feature descriptions along with a set of relationships that indicate how each anatomical entity is related to others in the embryo, tadpole, or adult frog. The XAO is integral to the functionality of Xenbase (http://www. xenbase.org), the Xenopus model organism database. Results: We significantly expanded the XAO in the last five years by adding 612 anatomical terms, 2934 relationships between them, 640 synonyms, and 547 ontology cross-references. Each term now has a definition, so database users and curators can be certain they are selecting the correct term when specifying an anatomical entity. With developmental timing information now asserted for every anatomical term, the ontology provides internal checks that ensure high-quality gene expression and phenotype data annotation. The XAO, now with 1313 defined anatomical and developmental stage terms, has been integrated with Xenbase expression and anatomy term searches and it enables links between various data types including images, clones, and publications. -
Lower Organisms As Alternatives for Toxicity Testing in Rodents with a Focus on Ceanorhabditis Elegans and the Zebrafish (Danio Rerio)
Report 340720003/2009 L.T.M. van der Ven Lower organisms as alternatives for toxicity testing in rodents With a focus on Ceanorhabditis elegans and the zebrafish (Danio rerio) RIVM report 340720003/2009 Lower organisms as alternatives for toxicity testing in rodents With a focus on Caenorhabditis elegans and the zebrafish (Danio rerio) L.T.M. van der Ven Contact: L.T.M. van der Ven Laboratory for Health Protection Research [email protected] This investigation has been performed by order and for the account of the Ministry of Health, Welfare and Sport, within the framework of V/340720 Alternatives for animal testing RIVM, P.O. Box 1, 3720 BA Bilthoven, the Netherlands Tel +31 30 274 91 11 www.rivm.nl © RIVM 2009 Parts of this publication may be reproduced, provided acknowledgement is given to the 'National Institute for Public Health and the Environment', along with the title and year of publication. RIVM report 340720003 2 Abstract Lower organisms as alternatives for toxicity testing in rodents With a focus on Caenorhabiditis elegans and the zebrafish (Danio rerio) The nematode C. elegans and the zebrafish embryo are promising alternative test models for assessment of toxic effects in rodents. Tests with these lower organisms may have a good predictive power for effects in humans and are thus complementary to tests with in vitro models (cell cultures). However, all described tests need further validation. This is the outcome of a literature survey, commissioned by the ministry of Health, Welfare and Sport of the Netherlands. The survey is part of the policy to reduce, refine and replace animal testing (3R policy). -
Stages of Embryonic Development of the Zebrafish
DEVELOPMENTAL DYNAMICS 2032553’10 (1995) Stages of Embryonic Development of the Zebrafish CHARLES B. KIMMEL, WILLIAM W. BALLARD, SETH R. KIMMEL, BONNIE ULLMANN, AND THOMAS F. SCHILLING Institute of Neuroscience, University of Oregon, Eugene, Oregon 97403-1254 (C.B.K., S.R.K., B.U., T.F.S.); Department of Biology, Dartmouth College, Hanover, NH 03755 (W.W.B.) ABSTRACT We describe a series of stages for Segmentation Period (10-24 h) 274 development of the embryo of the zebrafish, Danio (Brachydanio) rerio. We define seven broad peri- Pharyngula Period (24-48 h) 285 ods of embryogenesis-the zygote, cleavage, blas- Hatching Period (48-72 h) 298 tula, gastrula, segmentation, pharyngula, and hatching periods. These divisions highlight the Early Larval Period 303 changing spectrum of major developmental pro- Acknowledgments 303 cesses that occur during the first 3 days after fer- tilization, and we review some of what is known Glossary 303 about morphogenesis and other significant events that occur during each of the periods. Stages sub- References 309 divide the periods. Stages are named, not num- INTRODUCTION bered as in most other series, providing for flexi- A staging series is a tool that provides accuracy in bility and continued evolution of the staging series developmental studies. This is because different em- as we learn more about development in this spe- bryos, even together within a single clutch, develop at cies. The stages, and their names, are based on slightly different rates. We have seen asynchrony ap- morphological features, generally readily identi- pearing in the development of zebrafish, Danio fied by examination of the live embryo with the (Brachydanio) rerio, embryos fertilized simultaneously dissecting stereomicroscope. -
Patterns and Potential Mechanisms of Thermal Preference in E. Muscae-Infected Drosophila Melanogaster
Western Washington University Western CEDAR WWU Honors Program Senior Projects WWU Graduate and Undergraduate Scholarship Spring 2020 Patterns and potential mechanisms of thermal preference in E. muscae-infected Drosophila melanogaster Aundrea Koger Western Washington University Carolyn Elya Ph.D. Harvard University Jamilla Akhund-Zade Ph.D. Harvard University Benjamin de Bivort Ph.D. Harvard University Follow this and additional works at: https://cedar.wwu.edu/wwu_honors Recommended Citation Koger, Aundrea; Elya, Carolyn Ph.D.; Akhund-Zade, Jamilla Ph.D.; and de Bivort, Benjamin Ph.D., "Patterns and potential mechanisms of thermal preference in E. muscae-infected Drosophila melanogaster" (2020). WWU Honors Program Senior Projects. 406. https://cedar.wwu.edu/wwu_honors/406 This Project is brought to you for free and open access by the WWU Graduate and Undergraduate Scholarship at Western CEDAR. It has been accepted for inclusion in WWU Honors Program Senior Projects by an authorized administrator of Western CEDAR. For more information, please contact [email protected]. Patterns and potential mechanisms of thermal preference in Entomophthora muscae-infected Drosophila melanogaster 1 2 2 Aundrea Koger , Carolyn Elya, Ph.D. , Jamilla Akhund-Zade, Ph.D. , and Benjamin de Bivort, Ph.D.2 1 2 Honors Program, Western Washington University, Department of Organismic and Evolutionary Biology, Harvard University Abstract Animals use various strategies to defend against pathogens. Behavioral fever, or fighting infection by moving to warm locations, is seen in many ectotherms. The behavior-manipulating fungal pathogen Entomophthora muscae infects numerous dipterans, including fruit flies and house flies, Musca domestica. House flies have been shown to exhibit robust behavioral fever early after exposure to E.