Enrichment for Laboratory Zebrafish—A Review of the Evidence and the Challenges
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Rapid Effects of Sex Steroids on PGF2 Approach Response in Zebrafish
Rapid effects of sex steroids on PGF2� approach response in zebrafish (Danio rerio) Student Researcher: Leah B. Kratochvil, Advisor: Richmond R. Thompson Bowdoin College Department of Neuroscience Abstract Steroids are molecular messengers that regulate a variety of bodily functions, including behaviors and sexual motivation. Steroids have long been known to induce behavioral effects in days or weeks, but more recently have been discovered to effect these changes within seconds. Research surrounding these so-called “rapid” effects of steroids on sensory systems is lacking. I took advantage of the sophisticated sex pheromone system in zebrafish to study this system, and the male zebrafish approach response to the pre-ovulatory pheromone prostaglandin F2� (PGF2�). Sexually mature male zebrafish were treated with vehicle, T, or 11-ketotestosterone (11-KT) for 40 minutes, and then immediately evaluated for time spent near vehicle or PGF2� administered to their test tank. Initial data suggests that T-treated fish spent more time near the pheromone, indicating that T may rapidly modulate this response in zebrafish. There were no significant differences between treatments. Further investigation, with higher steroid and pheromone concentrations and a slightly different experimental design, is underway to confirm how T and/or 11-KT modulate(s) the male zebrafish approach response to PGF2�. Project Objectives Classically, steroids have been thought to act in the body by binding to intracellular receptors and inducing gene transcription, protein translation and ultimately behavioral responses. However, because this process – termed the “genomic” mechanism due to its interactions with the genome – takes time, these genomic behavioral effects usually take days or weeks to appear. -
The Effect of Fluoxetine on Self-Control in Betta Splendens
University of Montana ScholarWorks at University of Montana Graduate Student Theses, Dissertations, & Professional Papers Graduate School 2014 The effect of fluoxetine on self-control in betta splendens Kathryn Gwen Lamp The University of Montana Follow this and additional works at: https://scholarworks.umt.edu/etd Let us know how access to this document benefits ou.y Recommended Citation Lamp, Kathryn Gwen, "The effect of fluoxetine on self-control in betta splendens" (2014). Graduate Student Theses, Dissertations, & Professional Papers. 10770. https://scholarworks.umt.edu/etd/10770 This Dissertation is brought to you for free and open access by the Graduate School at ScholarWorks at University of Montana. It has been accepted for inclusion in Graduate Student Theses, Dissertations, & Professional Papers by an authorized administrator of ScholarWorks at University of Montana. For more information, please contact [email protected]. THE EFFECT OF FLUOXETINE ON SELF-CONTROL IN BETTA SPLENDENS by KATHRYN GWEN LAMP Bachelor of Arts, Christopher Newport University, Newport News, VA, 2008 Master of Arts, The University of Montana, Missoula, MT, 2012 Dissertation presented in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Experimental Psychology The University of Montana Missoula, MT June 2014 Approved by: Dr. Allen Szalda-Petree, Chair Department of Psychology Dr. Nabil Haddad Department of Psychology Dr. Stuart Hall Department of Psychology Dr. Jerry Smith Department of Biomedical and Pharmaceutical Sciences Dr. Keith Parker Department of Biomedical and Pharmaceutical Sciences UMI Number: 3628951 All rights reserved INFORMATION TO ALL USERS The quality of this reproduction is dependent upon the quality of the copy submitted. -
Mouse Models of Human Disease an Evolutionary Perspective Robert L
170 commentary Evolution, Medicine, and Public Health [2016] pp. 170–176 doi:10.1093/emph/eow014 Mouse models of human disease An evolutionary perspective Robert L. Perlman* Department of Pediatrics, The University of Chicago, 5841 S. Maryland Ave, MC 5058, Chicago, IL 60637, USA *E-mail: [email protected] Received 31 December 2015; revised version accepted 12 April 2016 ABSTRACT The use of mice as model organisms to study human biology is predicated on the genetic and physio- logical similarities between the species. Nonetheless, mice and humans have evolved in and become adapted to different environments and so, despite their phylogenetic relatedness, they have become very different organisms. Mice often respond to experimental interventions in ways that differ strikingly from humans. Mice are invaluable for studying biological processes that have been conserved during the evolution of the rodent and primate lineages and for investigating the developmental mechanisms by which the conserved mammalian genome gives rise to a variety of different species. Mice are less reliable as models of human disease, however, because the networks linking genes to disease are likely to differ between the two species. The use of mice in biomedical research needs to take account of the evolved differences as well as the similarities between mice and humans. KEYWORDS: allometry; cancer; gene networks; life history; model organisms transgenic, knockout, and knockin mice, have If you have cancer and you are a mouse, we can provided added impetus and powerful tools for take good care of you. Judah Folkman [1] mouse research, and have led to a dramatic increase in the use of mice as model organisms. -
Housing, Husbandry and Welfare of a “Classic” Fish Model, the Paradise Fish (Macropodus Opercularis)
animals Article Housing, Husbandry and Welfare of a “Classic” Fish Model, the Paradise Fish (Macropodus opercularis) Anita Rácz 1,* ,Gábor Adorján 2, Erika Fodor 1, Boglárka Sellyei 3, Mohammed Tolba 4, Ádám Miklósi 5 and Máté Varga 1,* 1 Department of Genetics, ELTE Eötvös Loránd University, Pázmány Péter stny. 1C, 1117 Budapest, Hungary; [email protected] 2 Budapest Zoo, Állatkerti krt. 6-12, H-1146 Budapest, Hungary; [email protected] 3 Fish Pathology and Parasitology Team, Institute for Veterinary Medical Research, Centre for Agricultural Research, Hungária krt. 21, 1143 Budapest, Hungary; [email protected] 4 Department of Zoology, Faculty of Science, Helwan University, Helwan 11795, Egypt; [email protected] 5 Department of Ethology, ELTE Eötvös Loránd University, Pázmány Péter stny. 1C, 1117 Budapest, Hungary; [email protected] * Correspondence: [email protected] (A.R.); [email protected] (M.V.) Simple Summary: Paradise fish (Macropodus opercularis) has been a favored subject of behavioral research during the last decades of the 20th century. Lately, however, with a massively expanding genetic toolkit and a well annotated, fully sequenced genome, zebrafish (Danio rerio) became a central model of recent behavioral research. But, as the zebrafish behavioral repertoire is less complex than that of the paradise fish, the focus on zebrafish is a compromise. With the advent of novel methodologies, we think it is time to bring back paradise fish and develop it into a modern model of Citation: Rácz, A.; Adorján, G.; behavioral and evolutionary developmental biology (evo-devo) studies. The first step is to define the Fodor, E.; Sellyei, B.; Tolba, M.; housing and husbandry conditions that can make a paradise fish a relevant and trustworthy model. -
Zebrafish Embryos and Bioinformatics: Useful and Marketable Exercises for Students Enrolled in Upper-Level Undergraduate Courses
2019 Eastern Biologist Special Issue 1 Zebrafish as a Model System for Research and Teaching A. Davis, H. Nguyen, and J. Qian 2019 Eastern Biologist Special Issue 1:47–63 Zebrafish Embryos and Bioinformatics: Useful and Marketable Exercises for Students Enrolled in Upper-Level Undergraduate Courses Adam Davis1*, Hong Nguyen1, and Jo Qian1 Abstract - The zebrafish (Danio rerio) is a widely used vertebrate model system in several branches of biological research, including molecular biology, developmental biology, and evolutionary biology. The rapid and transparent development of embryos outside of the mother allows for real- time observation of embryonic development of different types of organ systems. However, the types of wet-lab exercises involving zebrafish embryos that undergraduate students can perform during a 2-3 hour laboratory period are limited. Recent advances in bioinformatics applications and the availability of genomic sequence data from zebrafish and other evolutionarily divergent vertebrates, including human, allow students to be actively involved in semester-long molecular, evolutionary, and developmental biology projects that can be performed both in and out of the laboratory. In this paper, we report several exercises that can be used in upper level undergraduate biology courses that include a 2-3 hour weekly laboratory session. These exercises include amino acid and genomic DNA sequence alignment and gene expression analysis of Hoxa2, a developmental regulatory gene that is highly characterized in its expression and function. All exercises make use of standard operating procedures for training students on new techniques. The exercises presented will provide several learning outcomes for students, including the identification of conserved protein domains and cis- regulatory elements and how mutations to these motifs can lead to evolutionary diversity as well as the development of homeostatic imbalances in humans. -
Lower Organisms As Alternatives for Toxicity Testing in Rodents with a Focus on Ceanorhabditis Elegans and the Zebrafish (Danio Rerio)
Report 340720003/2009 L.T.M. van der Ven Lower organisms as alternatives for toxicity testing in rodents With a focus on Ceanorhabditis elegans and the zebrafish (Danio rerio) RIVM report 340720003/2009 Lower organisms as alternatives for toxicity testing in rodents With a focus on Caenorhabditis elegans and the zebrafish (Danio rerio) L.T.M. van der Ven Contact: L.T.M. van der Ven Laboratory for Health Protection Research [email protected] This investigation has been performed by order and for the account of the Ministry of Health, Welfare and Sport, within the framework of V/340720 Alternatives for animal testing RIVM, P.O. Box 1, 3720 BA Bilthoven, the Netherlands Tel +31 30 274 91 11 www.rivm.nl © RIVM 2009 Parts of this publication may be reproduced, provided acknowledgement is given to the 'National Institute for Public Health and the Environment', along with the title and year of publication. RIVM report 340720003 2 Abstract Lower organisms as alternatives for toxicity testing in rodents With a focus on Caenorhabiditis elegans and the zebrafish (Danio rerio) The nematode C. elegans and the zebrafish embryo are promising alternative test models for assessment of toxic effects in rodents. Tests with these lower organisms may have a good predictive power for effects in humans and are thus complementary to tests with in vitro models (cell cultures). However, all described tests need further validation. This is the outcome of a literature survey, commissioned by the ministry of Health, Welfare and Sport of the Netherlands. The survey is part of the policy to reduce, refine and replace animal testing (3R policy). -
Laboratory Animal Management: Rodents
THE NATIONAL ACADEMIES PRESS This PDF is available at http://nap.edu/2119 SHARE Rodents (1996) DETAILS 180 pages | 6 x 9 | PAPERBACK ISBN 978-0-309-04936-8 | DOI 10.17226/2119 CONTRIBUTORS GET THIS BOOK Committee on Rodents, Institute of Laboratory Animal Resources, Commission on Life Sciences, National Research Council FIND RELATED TITLES SUGGESTED CITATION National Research Council 1996. Rodents. Washington, DC: The National Academies Press. https://doi.org/10.17226/2119. Visit the National Academies Press at NAP.edu and login or register to get: – Access to free PDF downloads of thousands of scientific reports – 10% off the price of print titles – Email or social media notifications of new titles related to your interests – Special offers and discounts Distribution, posting, or copying of this PDF is strictly prohibited without written permission of the National Academies Press. (Request Permission) Unless otherwise indicated, all materials in this PDF are copyrighted by the National Academy of Sciences. Copyright © National Academy of Sciences. All rights reserved. Rodents i Laboratory Animal Management Rodents Committee on Rodents Institute of Laboratory Animal Resources Commission on Life Sciences National Research Council NATIONAL ACADEMY PRESS Washington, D.C.1996 Copyright National Academy of Sciences. All rights reserved. Rodents ii National Academy Press 2101 Constitution Avenue, N.W. Washington, D.C. 20418 NOTICE: The project that is the subject of this report was approved by the Governing Board of the National Research Council, whose members are drawn from the councils of the National Academy of Sciences, National Academy of Engineering, and Institute of Medicine. The members of the committee responsible for the report were chosen for their special competences and with regard for appropriate balance. -
Stages of Embryonic Development of the Zebrafish
DEVELOPMENTAL DYNAMICS 2032553’10 (1995) Stages of Embryonic Development of the Zebrafish CHARLES B. KIMMEL, WILLIAM W. BALLARD, SETH R. KIMMEL, BONNIE ULLMANN, AND THOMAS F. SCHILLING Institute of Neuroscience, University of Oregon, Eugene, Oregon 97403-1254 (C.B.K., S.R.K., B.U., T.F.S.); Department of Biology, Dartmouth College, Hanover, NH 03755 (W.W.B.) ABSTRACT We describe a series of stages for Segmentation Period (10-24 h) 274 development of the embryo of the zebrafish, Danio (Brachydanio) rerio. We define seven broad peri- Pharyngula Period (24-48 h) 285 ods of embryogenesis-the zygote, cleavage, blas- Hatching Period (48-72 h) 298 tula, gastrula, segmentation, pharyngula, and hatching periods. These divisions highlight the Early Larval Period 303 changing spectrum of major developmental pro- Acknowledgments 303 cesses that occur during the first 3 days after fer- tilization, and we review some of what is known Glossary 303 about morphogenesis and other significant events that occur during each of the periods. Stages sub- References 309 divide the periods. Stages are named, not num- INTRODUCTION bered as in most other series, providing for flexi- A staging series is a tool that provides accuracy in bility and continued evolution of the staging series developmental studies. This is because different em- as we learn more about development in this spe- bryos, even together within a single clutch, develop at cies. The stages, and their names, are based on slightly different rates. We have seen asynchrony ap- morphological features, generally readily identi- pearing in the development of zebrafish, Danio fied by examination of the live embryo with the (Brachydanio) rerio, embryos fertilized simultaneously dissecting stereomicroscope. -
Guidelines for Use of Zebrafish in the NIH Intramural Research Program
Guidelines for Use of Zebrafish in the NIH Intramural Research Program Background: The PHS Policy on Humane Care and Use of Laboratory Animals defines animal as, “any live, vertebrate animal used or intended for use in research, research training, experimentation or biological testing or for related purposes.”1 Furthermore, OLAW interpretation of PHS policy considers aquatic species as "live, vertebrate animals" at hatching.2 Although this is an imprecise stage for zebrafish it can be approximated at 72 hours post fertilization. General Guidelines for Animal Study Proposals (ASPs): • For purposes of animal number accountability, all stages of development greater than three days post fertilization(dpf) should be counted in an approved ASP. Due to the high throughput nature of the zebrafish model, large numbers of animals may be listed on ASPs (Section B and Section H in the NIH ASP Template). However, the majority of studies are completed on larval zebrafish between 4-7dpf. Therefore, to understand animal use, an Animal Care and Use Committee (ACUC) may request that investigators report their annual animal numbers separately as larval stages (4-7 dpf) and those animals reared past > 8dpf. • Brain structures required for the affective experience of noxious stimuli are immature at early larval stages (up to 7 dpf).3-9 The number of larvae used may be provided as an estimate considering their size and normal housing conditions. • When evaluating “Sex as a biological variable…”, the Principal Investigator (PI) and ACUC must consider age since sex is undetermined until at least 25 dpf.10,11 Common Zebrafish Procedures: Tissue Collection for Genotyping • Fin clipping for DNA analysis and/or genotyping must be described in the ASP and approved by the IC ACUC. -
A Haplotype Map for the Laboratory Mouse
NEWS AND VIEWS Sample size dictates inference dogma collection, rather than to data generation or ent experimental approaches provides insight The technical revolution that made the cur- analysis. The open question is whether the com- into mechanism and helps specify the genetic rent data boom possible has matured; genetics munity of funding agencies, peer reviewers and model. In fact, genomic convergence is a spe- laboratories now routinely generate millions of regulatory bodies will be prepared to encourage cific embodiment of the concept of ‘consilience genotypes per day. However, more data can be a and support the assembly of subjects and mate- of inductions’, formulated by William Whewell problem when we do not have the discipline to rials needed to accomplish these goals. in the 1840s11, which says that valid inductions apply the scientific method. Replication is also will be supported by data from many different a problem when working with effects so small Candidate gene success experimental approaches. that replication success could not be reasonably Rather than being discovered initially through a Although they benefit greatly from the expected, even if the marker is associated with genome-wide scan of hundreds of thousands of impressive acceleration provided by genome- the disease. genetic markers, which is now the rage, IL7R is wide scans, virtually all genetic association Larger sample size is the mantra of the hour. a candidate gene that refused to quit. Certainly, disease studies ultimately become candidate Experimentalists and funding agencies no longer the first paper on IL7R polymorphisms in mul- gene projects. Additional susceptibility genes in scoff at theoretical analyses showing that thou- tiple sclerosis7 would not have satisfied the strin- multiple sclerosis—siblings of HLA-DRB2, IL7R sands of cases and controls are needed to dem- gent replication criteria advocated by a recent and, probably, IL2RA4—might now stand above onstrate modest genetic associations (Fig. -
Genetic Analysis of Complex Traits in the Emerging Collaborative Cross
Downloaded from genome.cshlp.org on October 5, 2021 - Published by Cold Spring Harbor Laboratory Press Research Genetic analysis of complex traits in the emerging Collaborative Cross David L. Aylor,1 William Valdar,1,13 Wendy Foulds-Mathes,1,13 Ryan J. Buus,1,13 Ricardo A. Verdugo,2,13 Ralph S. Baric,3,4 Martin T. Ferris,1 Jeff A. Frelinger,4 Mark Heise,1 Matt B. Frieman,4 Lisa E. Gralinski,4 Timothy A. Bell,1 John D. Didion,1 Kunjie Hua,1 Derrick L. Nehrenberg,1 Christine L. Powell,1 Jill Steigerwalt,5 Yuying Xie,1 Samir N.P. Kelada,6 Francis S. Collins,6 Ivana V. Yang,7 David A. Schwartz,7 Lisa A. Branstetter,8 Elissa J. Chesler,2 Darla R. Miller,1 Jason Spence,1 Eric Yi Liu,9 Leonard McMillan,9 Abhishek Sarkar,9 Jeremy Wang,9 Wei Wang,9 Qi Zhang,9 Karl W. Broman,10 Ron Korstanje,2 Caroline Durrant,11 Richard Mott,11 Fuad A. Iraqi,12 Daniel Pomp,1,14 David Threadgill,5,14 Fernando Pardo-Manuel de Villena,1,14 and Gary A. Churchill2,14 1Department of Genetics, University of North Carolina–Chapel Hill, Chapel Hill, North Carolina 27599, USA; 2The Jackson Laboratory, Bar Harbor, Maine 04609, USA; 3Department of Epidemiology, University of North Carolina–Chapel Hill, Chapel Hill, North Carolina 27599, USA; 4Department of Microbiology and Immunology, University of North Carolina–Chapel Hill, Chapel Hill, North Carolina 27599, USA; 5Department of Genetics, North Carolina State University, Raleigh, North Carolina 27695, USA; 6Genome Technology Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland -
Structure of the Zebrafish Snail1 Gene and Its Expression in Wild-Type
Development 119, 1203-1215 (1993) 1203 Printed in Great Britain © The Company of Biologists Limited 1993 Structure of the zebrafish snail1 gene and its expression in wild-type, spadetail and no tail mutant embryos C. Thisse1, B. Thisse1, T. F. Schilling2 and J. H. Postlethwait1 1Institute of Molecular Biology and 2Institute of Neuroscience, University of Oregon, Eugene OR 97403 USA SUMMARY Mesoderm formation is critical for the establishment of cephalic neural crest derivatives. Many snail1-express- the animal body plan and in Drosophila requires the ing cells were missing from mutant spadetail embryos snail gene. This report concerns the cloning and and the quantity of snail1 RNA was greatly reduced in expression pattern of the structurally similar gene snail1 mutant no tail embryos. The work presented here from zebrafish. In situ hybridization shows that the suggests that snail1 is involved in morphogenetic events quantity of snail1 RNA increases at the margin of the during gastrulation, somitogenesis and development of blastoderm in cells that involute during gastrulation. As the cephalic neural crest, and that no tail may act as a gastrulation begins, snail1 RNA disappears from the positive regulator of snail1. dorsal axial mesoderm and becomes restricted to the paraxial mesoderm and the tail bud. snail1 RNA increases in cells that define the posterior border of each Key words: branchial arches, Brachydanio rerio, epiboly, somite and then disappears when somitic cells differen- gastrulation, mesoderm, neural crest, no tail, paraxial mesoderm, tiate. Later in development, expression appears in snail1, somitogenesis, spadetail, zebrafish, zinc finger INTRODUCTION and snail (Ip et al., 1991) that are required for mesoderm formation (Thisse et al., 1988; Alberga et al., 1991).