1. INTRODUCTION the Serranid Subfamily Epinephelinae
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												Coral Reef Monitoring in Kofiau and Boo Islands Marine Protected Area, Raja Ampat, West Papua. 2009—2011
August 2012 Indo-Pacific Division Indonesia Report No 6/12 Coral Reef Monitoring in Kofiau and Boo Islands Marine Protected Area, Raja Ampat, West Papua. 2009—2011 Report Compiled By: Purwanto, Muhajir, Joanne Wilson, Rizya Ardiwijaya, and Sangeeta Mangubhai August 2012 Indo-Pacific Division Indonesia Report No 6/12 Coral Reef Monitoring in Kofiau and Boo Islands Marine Protected Area, Raja Ampat, West Papua. 2009—2011 Report Compiled By: Purwanto, Muhajir, Joanne Wilson, Rizya Ardiwijaya, and Sangeeta Mangubhai Published by: TheNatureConservancy,Indo-PacificDivision Purwanto:TheNatureConservancy,IndonesiaMarineProgram,Jl.Pengembak2,Sanur,Bali, Indonesia.Email: [email protected] Muhajir: TheNatureConservancy,IndonesiaMarineProgram,Jl.Pengembak2,Sanur,Bali, Indonesia.Email: [email protected] JoanneWilson: TheNatureConservancy,IndonesiaMarineProgram,Jl.Pengembak2,Sanur,Bali, Indonesia. RizyaArdiwijaya:TheNatureConservancy,IndonesiaMarineProgram,Jl.Pengembak2,Sanur, Bali,Indonesia.Email: [email protected] SangeetaMangubhai: TheNatureConservancy,IndonesiaMarineProgram,Jl.Pengembak2, Sanur,Bali,Indonesia.Email: [email protected] Suggested Citation: Purwanto,Muhajir,Wilson,J.,Ardiwijaya,R.,Mangubhai,S.2012.CoralReefMonitoringinKofiau andBooIslandsMarineProtectedArea,RajaAmpat,WestPapua.2009-2011.TheNature Conservancy,Indo-PacificDivision,Indonesia.ReportN,6/12.50pp. © 2012012012201 222 The Nature Conservancy AllRightsReserved.Reproductionforanypurposeisprohibitedwithoutpriorpermission. AllmapsdesignedandcreatedbyMuhajir. CoverPhoto: - 
												
												RNA Detection Technology for Applications in Marine Science: Microbes to Fish Robert Michael Ulrich University of South Florida, [email protected]
University of South Florida Scholar Commons Graduate Theses and Dissertations Graduate School 6-25-2014 RNA Detection Technology for Applications in Marine Science: Microbes to Fish Robert Michael Ulrich University of South Florida, [email protected] Follow this and additional works at: https://scholarcommons.usf.edu/etd Part of the Biology Commons, and the Molecular Biology Commons Scholar Commons Citation Ulrich, Robert Michael, "RNA Detection Technology for Applications in Marine Science: Microbes to Fish" (2014). Graduate Theses and Dissertations. https://scholarcommons.usf.edu/etd/5321 This Dissertation is brought to you for free and open access by the Graduate School at Scholar Commons. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Scholar Commons. For more information, please contact [email protected]. RNA Detection Technology for Applications in Marine Science: Microbes to Fish by Robert M. Ulrich A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy College of Marine Science University of South Florida Major Professor: John H. Paul, Ph.D. Valerie J. Harwood, Ph.D. Mya Breitbart, Ph.D. Christopher D. Stallings, Ph.D. David E. John, Ph.D. Date of Approval June 25, 2014 Keywords: NASBA, grouper, Karenia mikimotoi, Enterococcus Copyright © 2014, Robert M. Ulrich DEDICATION This dissertation is dedicated to my fiancée, Dr. Shannon McQuaig for inspiring my return to graduate school and her continued support over the last four years. On no other porch in our little town have there been more impactful scientific discussions, nor more words of encouragement. ACKNOWLEDGMENTS I gratefully acknowledge the many people who have encouraged and advised me throughout my graduate studies. - 
												
												Download Book (PDF)
e · ~ e t · aI ' A Field Guide to Grouper and Snapper Fishes of Andaman and Nicobar Islands (Family: SERRANIDAE, Subfamily: EPINEPHELINAE and Family: LUTJANIDAE) P. T. RAJAN Andaman & Nicobar Regional Station Zoological Survey of India Haddo, Port Blair - 744102 Edited by the Director, Zoological Survey of India, Kolkata Zoological Survey of India Kolkata CITATION Rajan, P. T. 2001. Afield guide to Grouper and Snapper Fishes of Andaman and Nicobar Islands. (Published - Director, Z.5.1.) Published : December, 2001 ISBN 81-85874-40-9 Front cover: Roving Coral Grouper (Plectropomus pessuliferus) Back cover : A School of Blue banded Snapper (Lutjanus lcasmira) © Government of India, 2001 ALL RIGHTS RESERVED • No part of this publication may be reproduced, stored in a retrieval system or transmitted, in any form or by any means, electronic, mechanical, photocopying, recording or otherwise without the prior permission of the publisher. • This book is sold subject to the condition that it shall not, by way of trade, be lent, re-sold, hired out or otherwise disposed of without the publisher'S consent, in any form of binding or cover other than that in which it is published. • The correct price of this publication is the price printed on this page. Any revised price indicated by a rubber stamp or by a sticker or by any other means is incorrect and should be unacceptable. PRICE Indian Rs. 400.00 Foreign $ 25; £ 20 Published at the Publication Division by the Director, Zoological Survey of India, 234/4, AJe Bose Road, 2nd MSO Building, (13th Floor), Nizam Palace, Calcutta-700 020 after laser typesetting by Computech Graphics, Calcutta 700019 and printed at Power Printers, New Delhi - 110002. - 
												
												Diet Composition of Juvenile Black Grouper (Mycteroperca Bonaci) from Coastal Nursery Areas of the Yucatán Peninsula, Mexico
BULLETIN OF MARINE SCIENCE, 77(3): 441–452, 2005 NOTE DIET COMPOSITION OF JUVENILE BLACK GROUPER (MYCTEROPERCA BONACI) FROM COASTAL NURSERY AREAS OF THE YUCATÁN PENINSULA, MEXICO Thierry Brulé, Enrique Puerto-Novelo, Esperanza Pérez-Díaz, and Ximena Renán-Galindo Groupers (Epinephelinae, Epinephelini) are top-level predators that influence the trophic web of coral reef ecosystems (Parrish, 1987; Heemstra and Randall, 1993; Sluka et al., 2001). They are demersal mesocarnivores and stalk and ambush preda- tors that sit and wait for larger moving prey such as fish and mobile invertebrates (Cailliet et al., 1986). Groupers contribute to the ecological balance of complex tropi- cal hard-bottom communities (Sluka et al., 1994), and thus large changes in their populations may significantly alter other community components (Parrish, 1987). The black grouper (Mycteroperca bonaci Poey, 1860) is an important commercial and recreational fin fish resource in the western Atlantic region (Bullock and Smith, 1991; Heemstra and Randall, 1993). The southern Gulf of Mexico grouper fishery is currently considered to be deteriorated and M. bonaci, along with red grouper (Epinephelus morio Valenciennes, 1828) and gag (Mycteroperca microlepis Goode and Bean, 1880), is one of the most heavily exploited fish species in this region (Co- lás-Marrufo et al., 1998; SEMARNAP, 2000). Currently, M. bonaci is considered a threatened species (Morris et al., 2000; IUCN, 2003) and has been classified as vul- nerable in U.S. waters because male biomass in the Atlantic dropped from 20% in 1982 to 6% in 1995 (Musick et al., 2000). The black grouper is usually found on irregular bottoms such as coral reefs, drop- off walls, and rocky ledges, at depths from 10 to 100 m (Roe, 1977; Manooch and Mason, 1987; Bullock and Smith, 1991; Heemstra and Randall, 1993). - 
												
												Checklist of Serranid and Epinephelid Fishes (Perciformes: Serranidae & Epinephelidae) of India
Journal of the Ocean Science Foundation 2021, Volume 38 Checklist of serranid and epinephelid fishes (Perciformes: Serranidae & Epinephelidae) of India AKHILESH, K.V. 1, RAJAN, P.T. 2, VINEESH, N. 3, IDREESBABU, K.K. 4, BINEESH, K.K. 5, MUKTHA, M. 6, ANULEKSHMI, C. 1, MANJEBRAYAKATH, H. 7, GLADSTON, Y. 8 & NASHAD M. 9 1 ICAR-Central Marine Fisheries Research Institute, Mumbai Regional Station, Maharashtra, India. Corresponding author: [email protected]; Email: [email protected] 2 Andaman & Nicobar Regional Centre, Zoological Survey of India, Port Blair, India. Email: [email protected] 3 Department of Health & Family Welfare, Government of West Bengal, India. Email: [email protected] 4 Department of Science and Technology, U.T. of Lakshadweep, Kavaratti, India. Email: [email protected] 5 Southern Regional Centre, Zoological Survey of India, Chennai, Tamil Nadu, India. Email: [email protected] 6 ICAR-Central Marine Fisheries Research Institute, Visakhapatnam Regional Centre, Andhra Pradesh, India. Email: [email protected] 7 Centre for Marine Living Resources and Ecology, Kochi, Kerala, India. Email: [email protected] 8 ICAR-Central Island Agricultural Research Institute, Port Blair, Andaman and Nicobar Islands, India. Email: [email protected] 9 Fishery Survey of India, Port Blair, Andaman and Nicobar Islands, 744101, India. Email: [email protected] Abstract We provide an updated checklist of fishes of the families Serranidae and Epinephelidae reported or listed from India, along with photographs. A total of 120 fishes in this group are listed as occurring in India based on published literature, of which 25 require further confirmation and validation. We confirm here the presence of at least 95 species in 22 genera occurring in Indian marine waters. - 
												
												Fish Populations and Habitat Assessment on the Oculina Bank
195 Abstract—A portion of the Oculina Assessment of fish populations and habitat Bank located off eastern Florida is a marine protected area (MPA) pre- on Oculina Bank, a deep-sea coral marine served for its dense populations of the ivory tree coral (Oculina varicosa), protected area off eastern Florida which provides important habitat for fish. Surveys of fish assemblages Stacey L. Harter (contact author)1 and benthic habitat were conducted 1 inside and outside the MPA in 2003 Marta M. Ribera and 2005 by using remotely operated Andrew N. Shepard2 vehicle video transects and digital 3 still imagery. Fish species composi- John K. Reed tion, biodiversity, and grouper densi- Email address for contact author: [email protected] ties were used to determine whether 1 National Marine Fisheries Service O. varicosa forms an essential habitat Southeast Fisheries Science Center compared to other structure-forming 3500 Delwood Beach Rd. habitats and to examine the effective- Panama City, Florida 32408 ness of the MPA. Multivariate analy- 2 NOAA Undersea Research Center ses indicated no differences in fish University of North Carolina at Wilmington assemblages or biodiversity among 5600 Marvin Moss Lane hardbottom habitat types and grou- Wilmington, North Carolina 28409 per densities were highest among the most complex habitats; however the 3 Harbor Branch Oceanographic Institute higher densities were not exclusive to Florida Atlantic University coral habitat. Therefore, we conclude 5600 U.S. 1 North that O. varicosa was functionally Ft. Pierce, Florida 34946 equivalent to other hardbottom habi- tats. Even though fish assemblages were not different among manage- ment areas, biodiversity and grouper densities were higher inside the MPA compared to outside. - 
												
												Valuable but Vulnerable: Over-Fishing and Under-Management Continue to Threaten Groupers So What Now?
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/339934856 Valuable but vulnerable: Over-fishing and under-management continue to threaten groupers so what now? Article in Marine Policy · June 2020 DOI: 10.1016/j.marpol.2020.103909 CITATIONS READS 15 845 17 authors, including: João Pedro Barreiros Alfonso Aguilar-Perera University of the Azores - Faculty of Agrarian and Environmental Sciences Universidad Autónoma de Yucatán -México 215 PUBLICATIONS 2,177 CITATIONS 94 PUBLICATIONS 1,085 CITATIONS SEE PROFILE SEE PROFILE Pedro Afonso Brad E. Erisman IMAR Institute of Marine Research / OKEANOS NOAA / NMFS Southwest Fisheries Science Center 152 PUBLICATIONS 2,700 CITATIONS 170 PUBLICATIONS 2,569 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Comparative assessments of vocalizations in Indo-Pacific groupers View project Study on the reef fishes of the south India View project All content following this page was uploaded by Matthew Thomas Craig on 25 March 2020. The user has requested enhancement of the downloaded file. Marine Policy 116 (2020) 103909 Contents lists available at ScienceDirect Marine Policy journal homepage: http://www.elsevier.com/locate/marpol Full length article Valuable but vulnerable: Over-fishing and under-management continue to threaten groupers so what now? Yvonne J. Sadovy de Mitcheson a,b, Christi Linardich c, Joao~ Pedro Barreiros d, Gina M. Ralph c, Alfonso Aguilar-Perera e, Pedro Afonso f,g,h, Brad E. Erisman i, David A. Pollard j, Sean T. Fennessy k, Athila A. Bertoncini l,m, Rekha J. - 
												
												Phylogeny of the Epinephelinae (Teleostei: Serranidae)
BULLETIN OF MARINE SCIENCE, 52(1): 240-283, 1993 PHYLOGENY OF THE EPINEPHELINAE (TELEOSTEI: SERRANIDAE) Carole C. Baldwin and G. David Johnson ABSTRACT Relationships among epinepheline genera are investigated based on cladistic analysis of larval and adult morphology. Five monophyletic tribes are delineated, and relationships among tribes and among genera of the tribe Grammistini are hypothesized. Generic com- position of tribes differs from Johnson's (1983) classification only in the allocation of Je- boehlkia to the tribe Grammistini rather than the Liopropomini. Despite the presence of the skin toxin grammistin in the Diploprionini and Grammistini, we consider the latter to be the sister group of the Liopropomini. This hypothesis is based, in part, on previously un- recognized larval features. Larval morphology also provides evidence of monophyly of the subfamily Epinephelinae, the clade comprising all epinepheline tribes except Niphonini, and the tribe Grammistini. Larval features provide the only evidence of a monophyletic Epine- phelini and a monophyletic clade comprising the Diploprionini, Liopropomini and Gram- mistini; identification of larvae of more epinephelines is needed to test those hypotheses. Within the tribe Grammistini, we propose that Jeboehlkia gladifer is the sister group of a natural assemblage comprising the former pseudogrammid genera (Aporops, Pseudogramma and Suttonia). The "soapfishes" (Grammistes, Grammistops, Pogonoperca and Rypticus) are not monophyletic, but form a series of sequential sister groups to Jeboehlkia, Aporops, Pseu- dogramma and Suttonia (the closest of these being Grammistops, followed by Rypticus, then Grammistes plus Pogonoperca). The absence in adult Jeboehlkia of several derived features shared by Grammistops, Aporops, Pseudogramma and Suttonia is incongruous with our hypothesis but may be attributable to paedomorphosis. - 
												
												A New Species of Serranid Fish of the Genus Anthias from the Hawaiian Islands and Johnston Island1
Pacific Science (1984), vol. 38, no. 3 © 1984 by the University of Hawaii Press. All rights reserved A New Species of Serranid Fish of the Genus Anthias from the Hawaiian Islands and Johnston Island1 JOHN E. RANDALL 2 AND STEPHEN RALSTON 3 ABSTRACT: The serranid fish Anthiasfucinus is described from 15 specimens collected from steep rocky slopes atdepths of168-198 m in the Hawaiian Islands and 214-237 m atJohnston Island. It is unique among the known species of the genus in lacking vomerine teeth. Other diagnostic characters are 9 soft anal rays (ofthe Indo-Pacific species ofAnthias only A. ventralis has this count); 16 dorsal soft rays; 15 or 16 pectoral rays (all unbranched); lateral line with a distinct angle at anterior end of straight peduncular part, the pored scales 34-36 (only A. boulengeri from the GulfofOman has this number ofpored scales); membranes ofdorsal fin not incised; no prolonged dorsal spine (fourth or fifth spines barely longest); and a distinctive head color pattern ofalternating stripes ofviolet and yellow. THE FISHES OF THE GENUS Anthias (family Ser Randall (1979) reviewed the three Hawai ranidae, subfamily Anthiinae) are small color ian species of Anthias known to him at that ful species generally found on coral reefs or time, the endemic A. thompsoni (Fowler) and rocky bottoms in tropical and subtropical two widespread new species, A. bicolor and A. seas. They feed on zooplankton, usually in ventralis. The latter is subspecifically different small aggregations a meter or more above the in the Hawaiian region, hence was named A. substratum, retiring to the shelter of the reef ventralis hawaiiensis. - 
												
												FAU Institutional Repository
FAU Institutional Repository http://purl.fcla.edu/fau/fauir This paper was submitted by the faculty of FAU’s Harbor Branch Oceanographic Institute. Notice: ©1992 Rosenstiel School of Marine and Atmospheric Science, University of Miami. This manuscript is available at http://www.rsmas.miami.edu/bms and may be cited as: Gilmore, R.G. & Jones, R. S. (1992). Color variation and associated behavior in the epinepheline groupers, Mycteroperca microlepis (Goode and Bean) and M. phenax Jordan and Swain. Bulletin of Marine Science, 51(1), 83-103. BULLETIN OF MARINE SCIENCE, 51(1): 83-103,1992 CORAL REEF PAPER COLOR VARIATION AND ASSOCIATED BEHAVIOR IN THE EPINEPHELINE GROUPERS, MYCTEROPERCA MICROLEPIS (GOODE AND BEAN) AND M. PHENAX JORDAN AND SWAIN R. Grant Gilmore and Robert S. Jones ABSTRACT Color variants and behavior of scamp, Mycteroperca phenax. and gag, M, microlepis, are described from 64 submersible dives made on reef structures at depths between 20 and 100 m off the east coast of Florida from February 1977 to September 1982. These dives yielded 146 h of observations augmented with video and 35 mm photography. Both species display a variety of color phases associated with social behavior. They are expressed in each case by an aggressive, dominant territorial individual which displays to a group of smaller subor- dinates. Social hierarchy is evident in both species, with the alpha individual being a male in the gag and of undetermined sex in the scamp. Although actual spawning was not docu- mented, hierarchical behavior and displays are interpreted as courtship associated with spawn- ing activity. Courtship is further implied based on the similarity of these behaviors to those recorded for a variety of other fishes including serranids. - 
												
												Reef Fishes of the Bird's Head Peninsula, West
Check List 5(3): 587–628, 2009. ISSN: 1809-127X LISTS OF SPECIES Reef fishes of the Bird’s Head Peninsula, West Papua, Indonesia Gerald R. Allen 1 Mark V. Erdmann 2 1 Department of Aquatic Zoology, Western Australian Museum. Locked Bag 49, Welshpool DC, Perth, Western Australia 6986. E-mail: [email protected] 2 Conservation International Indonesia Marine Program. Jl. Dr. Muwardi No. 17, Renon, Denpasar 80235 Indonesia. Abstract A checklist of shallow (to 60 m depth) reef fishes is provided for the Bird’s Head Peninsula region of West Papua, Indonesia. The area, which occupies the extreme western end of New Guinea, contains the world’s most diverse assemblage of coral reef fishes. The current checklist, which includes both historical records and recent survey results, includes 1,511 species in 451 genera and 111 families. Respective species totals for the three main coral reef areas – Raja Ampat Islands, Fakfak-Kaimana coast, and Cenderawasih Bay – are 1320, 995, and 877. In addition to its extraordinary species diversity, the region exhibits a remarkable level of endemism considering its relatively small area. A total of 26 species in 14 families are currently considered to be confined to the region. Introduction and finally a complex geologic past highlighted The region consisting of eastern Indonesia, East by shifting island arcs, oceanic plate collisions, Timor, Sabah, Philippines, Papua New Guinea, and widely fluctuating sea levels (Polhemus and the Solomon Islands is the global centre of 2007). reef fish diversity (Allen 2008). Approximately 2,460 species or 60 percent of the entire reef fish The Bird’s Head Peninsula and surrounding fauna of the Indo-West Pacific inhabits this waters has attracted the attention of naturalists and region, which is commonly referred to as the scientists ever since it was first visited by Coral Triangle (CT). - 
												
												Testicular Inducing Steroidogenic Cells Trigger Sex Change in Groupers
www.nature.com/scientificreports OPEN Testicular inducing steroidogenic cells trigger sex change in groupers Ryosuke Murata1,2*, Ryo Nozu2,3,4, Yuji Mushirobira1, Takafumi Amagai1, Jun Fushimi5, Yasuhisa Kobayashi2,6, Kiyoshi Soyano1, Yoshitaka Nagahama7,8 & Masaru Nakamura2,3 Vertebrates usually exhibit gonochorism, whereby their sex is fxed throughout their lifetime. However, approximately 500 species (~ 2%) of extant teleost fshes change sex during their lifetime. Although phylogenetic and evolutionary ecological studies have recently revealed that the extant sequential hermaphroditism in teleost fsh is derived from gonochorism, the evolution of this transsexual ability remains unclear. We revealed in a previous study that the tunica of the ovaries of several protogynous hermaphrodite groupers contain functional androgen-producing cells, which were previously unknown structures in the ovaries of gonochoristic fshes. Additionally, we demonstrated that these androgen-producing cells play critical roles in initiating female-to-male sex change in several grouper species. In the present study, we widened the investigation to include 7 genera and 18 species of groupers and revealed that representatives from most major clades of extant groupers commonly contain these androgen-producing cells, termed testicular-inducing steroidogenic (TIS) cells. Our fndings suggest that groupers acquired TIS cells in the tunica of the gonads for successful sex change during their evolution. Thus, TIS cells trigger the evolution of sex change in groupers. Apart from fshes, vertebrates do not have a transsexual ability; however, approximately 2% of extant teleost fshes can change sex, an ability called sequential hermaphroditism 1–4. Sex change in fshes is widely divided into three types: female-to-male (protogyny), male-to-female (protandry), and change in both directions3–5.