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Cite this: Nat. Prod. Rep., 2011, 28,78 www.rsc.org/npr REVIEW NMR methods for unravelling the spectra of complex mixtures
Ramon Novoa-Carballal,a Eduardo Fernandez-Megia,a Carlos Jim enezb and Ricardo Riguera*a
Received 30th July 2010 DOI: 10.1039/c005320c
Covering: up to May 2010
The main methods for the simplification of the NMR of complex mixtures by selective attenuation/ suppression of the signals of certain components are presented. The application of relaxation, diffusion and PSR filters and other techniques (J-resolution, TOCSY, etc.), to biological samples, pharmaceuticals, foods, living organisms and natural products are illustrated with examples.
1 Introduction 3.3.3 NMR of pharmaceuticals 2 Relaxation filters 3.3.4 NMR of foods 2.1 Basic concepts 3.3.5 NMR of humic substances
2.1.1 T1, T2 and T1r filters 3.3.6 NMR of biological fluids and tissues 2.1.2 T2 and T1r versus T1 filters 3.3.7 NMR of other complex mixtures 2.1.3 T2 versus T1r filters 4 Other methods 2.1.4 Limitations and practical considerations of relaxa- 4.1 Selective saturation and magnetization transfer tion editing 4.2 TOCSY 2.2 Methodology and state of the art 4.3 J-resolved spectroscopy (JRES) 2.2.1 Pulse sequences: Inversion recovery and spin-echo 4.4 ‘Virtual’ relaxation-edited spectroscopy (RESY) Downloaded on 30/04/2013 15:21:41. 2.2.2 The use of combined techniques 4.5 Paramagnetic spin relaxation (PSR) filtering 2.2.3 Advanced editing of spectra (TOSY and TOPSY) 5 Conclusions
Published on 11 October 2010 http://pubs.rsc.org | doi:10.1039/C005320C 2.3 Application of relaxation filters to the NMR analysis 6 Acknowledgements of mixtures 7 References 2.3.1 NMR of biological fluids 2.3.2 NMR of cells and tissues 2.3.3 NMR of whole specimens 1 Introduction 2.3.4 NMR of food 2.3.5 Relaxation vs. diffusion editing For chemists, it is unfortunate that Nature only very rarely 3 Diffusion methods presents its results in the form of pure compounds. Therefore, 3.1 Basic concepts separation and purification of components from complex 3.2 Methodology and the state of the art mixtures has historically occupied a central role in the effort of 3.2.1 Data acquisition researchers, particularly in the field of natural products 3.2.2 Data-processing approaches research. 3.2.3 The use of combined techniques Although very efficient separation methods have been devel- 3.2.4 Enhancement of diffusion coefficient differences oped that provide the pure components ready for structure 3.3 Applications of diffusion NMR spectroscopy to determination, most of the working time is devoted to the NMR analysis of complex mixtures separation/purification steps and not to the structural determi- 3.3.1 NMR of natural product extracts nation. A step further in the optimization of this research has 3.3.2 NMR of natural product mixtures been the implementation of hyphenated techniques such as HPLC–NMR, where the products of the HPLC column enter the NMR spectrometer directly so that no isolation or manip- aDepartment of Organic Chemistry and Centre for Research in Biological ulation of the sample is necessary to obtain the spectra. Still, the Chemistry and Molecular Materials, University of Santiago de investigation of complex mixtures relies on the classical para- Compostela, Jenaro de la Fuente s/n, 15782 Santiago de Compostela, Spain. E-mail: [email protected] digm that has presided over the work of natural products bDepartment of Fundamental Chemistry, Faculty of Sciences, University of chemists for years: first, to separate and purify the components, A Coruna,~ A Coruna,~ Spain and next, to submit the pure compounds to spectroscopic
78 | Nat. Prod. Rep., 2011, 28, 78–98 This journal is ª The Royal Society of Chemistry 2011 View Article Online
analysis. This protocol requires the separation of many ‘useless’ its constituents. The mixture is directly submitted to NMR components in order to isolate a single or just a few compounds and the acquisition is implemented in a way that allows the of interest, and stresses the increasing importance of der- data from the components to be obtained with no previous eplication. separation. Nowadays. and thanks to the developments of NMR, it is The most important procedures are based on differences in the not always necessary to separate the components of translational diffusion and NMR relaxation times of the a mixture in order to obtain spectroscopic information from components in the mixture. These differences allow one to obtain
Ramon Novoa-Carballal was BS (1984) and PhD (1988) in born in 1979, and received his Organic Chemistry at the BS (2002), MS (2004) and University of Santiago de Com- PhD (2009) in chemistry at the postela (USC), and did post- University of Santiago de Com- doctoral studies at the postela (USC) (supervisors R. University of California at Riguera and E. Fernandez- Santa Cruz (USA) with Dr Phil Megia). During his BS, he Crews (1988–1990) and at the joined the Friedrich Schiller Scripps Research Institute, La University Jena (Germany) for Jolla (USA) with Dr Alfonso two semesters (2000–2001). As Tramontano (1990–1991). He part of his PhD, he had two was assistant professor of short stays at the Imperial Chemistry at USC until 1992 Ramon Novoa-Carballal College London (supervisors A. Carlos Jim enez and then moved to University of Miller and M. Thanou) and the A Coruna,~ where he reached his Stockholm University (super- current position as Full visor G. Widmalm). In 2010 he obtained a Barrie de la Maza Professor of Organic Chemistry in 2009. His research focuses on Fellowship to undertake a postdoc at the University of Bayreuth. the chemistry of bioactive natural products (isolation, structural His research is focused on synthetic modification and character- elucidation, and synthesis), mainly from marine organisms, and the ization (especially by NMR spectroscopy) of polysaccharides and applications of NMR techniques to structural problems, mainly in
Downloaded on 30/04/2013 15:21:41. dendrimers of pharmaceutical interest. the determination of the relative configuration of organic mole- cules. He has authored some 80 scientific publications and mono- graphs. Published on 11 October 2010 http://pubs.rsc.org | doi:10.1039/C005320C
Eduardo Fernandez-Megia was Ricardo Riguera received his born in 1967 in Vigo, Spain, and PhD in Chemistry from the is currently a Professor Titular University of Santiago de Com- in the Organic Chemistry postela (USC) in 1973. He Department and Centre for carried out postdoctoral studies Research in Biological Chem- at University College London istry and Molecular Materials with Prof. P. Garrat (1974). He at the University of Santiago de was appointed Lecturer in 1978, Compostela (USC). After and in 1990 he became full completing a Ph.D. in 1995 at Professor of Chemistry at USC. USC (supervisor Prof. F. Javier His research is represented by Sardina), he undertook a post- around 200 papers and patents doctoral stay with Prof. Steven covering several topics: bioac- Eduardo Fernandez-Megia V. Ley at the University of Ricardo Riguera tive natural products, medicinal Cambridge (1997–1999). Then, chemistry and NMR methods he returned to the USC as for determination of absolute a Marie Curie Fellow and Prof. Asociado. In 2003, Eduardo configuration. He is now interested on polymeric nanostructures for became a Ramon y Cajal Fellow, followed by a Prof. Contratado biomedical applications and on stimuli responsive dynamic poly- Doctor in 2008. His research has focused on the interface between mers. He has authored three textbooks for students and served the organic and polymer chemistry with emphasis on the preparation of University as Chairman of the Department, Dean of the Faculty well-defined polymeric nanostructures for biomedical applications and Vice-Chancellor. and the development of NMR and SPR tools for their character- ization.
This journal is ª The Royal Society of Chemistry 2011 Nat. Prod. Rep., 2011, 28, 78–98 | 79 View Article Online
either edited spectra (i.e. spectra where only the components with widely used as a source of information on the dynamics of defined relaxation times or diffusion coefficients are observed), compounds,9 as well as on the study of interactions.10 or to obtain bidimensional spectra (one dimension being the In the case of complex mixtures, the dependence of the chemical shift and the other the diffusion coefficient or relaxation relaxation times on the dynamics and flexibility of each molecule time). Both options have been described for relaxation and opens the possibility to selectively attenuate, or even remove, the diffusion, but bidimensional spectra are only commonly used for signals of the components with shorter spin–lattice (also called
diffusion (diffusion-ordered spectroscopy, DOSY). longitudinal) relaxation times, T1 and T1r (longitudinal relaxa- Relaxation filters allow the attenuation/suppression of the tion under spin-lock pulse conditions), or spin–spin (transversal)
signals from compounds with high molecular weight, and diffusion relaxation times, T2. filters attenuate the signals from low molecular weight compounds. An illustrative example of relaxation edited spectra is shown in Therefore they can be used to simplify the spectra of a mixture by Fig. 1, where the signals from proteins and lipoproteins (with shorter
selectively acting on these two types of components. Other T1, T1r and T2) are almost completely removed from the spectra. procedures, such as the addition of paramagnetic spin relaxation
agents (PSR filters), are based on completely different mecha- 2.1.1 T1, T2 and T1r filters. A comprehensive description of nisms, and expand the usefulness of diffusion and relaxation filters the theoretical principles of NMR relaxation is out the scope of to other components independently of their molecular weight. the present review. The interested reader is referred to excellent These approaches have been demonstrated to work very books and reviews in the field.9 Although this section is devoted successfully with biological fluids (urine, serum, cells, tissues), to the applications in relaxation-edited NMR, some comments
with whole specimens and cells, pharmaceutical preparations, on the different methods that derive from the use of T1, T2 or T1r and in food analysis, but surprisingly, only a very few examples filters and their differences should be mentioned. of application to natural products research have been published.
In this review, we present the main characteristics and prac- 2.1.2 T2 and T1r versus T1 filters. The overall rotational tical aspects of methods for unravelling the NMR of mixtures, correlation time has a much greater importance in determining T2 illustrated with examples. We hope to provide practitioners of and T1r than T1, which is more sensitive to local motions such as natural products research with information useful to evaluate the segmental reorientations, rotations etc. Additionally, T2 and T1r use of these procedures when investigating the mixtures they values show a continuous decrease with decreasing mobility, while
usually come across. T1 diminishes until a minimum and increases with a further Accordingly, this review contains three main sections, the first decrease of the mobility. As a consequence, low and high molecular
two being devoted to the use of relaxation and diffusion weight compounds differ much more in their T2 and T1r values parameters. A third section describes the application of other than in T1. This fact determines the different use of both types of NMR methods, such as J-resolved spectroscopy, TOCSY and filters depending on the nature of the molecules in the sample. the use of PSR agents. A good example is human plasma (Fig. 1) where proteins with Downloaded on 30/04/2013 15:21:41. T2, T1r and T1 values lower than those of peptides and glucose 2 Relaxation filters can be distinguished from them using these filters. Thus, the T2 and T values of the proteins are one order of magnitude lower Published on 11 October 2010 http://pubs.rsc.org | doi:10.1039/C005320C 1r Relaxation filters are pulse sequences that allow the selective than those of the peptides and the glucose, while T1 values are attenuation of signals of high molecular weight and/or rigid only 3–5 times lower. Therefore, the attenuation of the high compounds, eventually leading to their suppression (Fig. 1). molecular weight compounds is more efficient using T2 and T1r For the analysis of natural mixtures, this methodology was filters than with T1. This explains the much more extensive use of first proposed in the late 1970s with studies on adrenal medulla,2 the former filters in spectral editing.† 3 and metabolites in red blood cells. Later on, the group of Although the differences in T1 are lower, they are sufficient to Nicholson introduced several improvements converting this be exploited for the purpose of spectral editing (see Fig. 1). One NMR technique into a routine method in metabolism studies.4–8 typical example is water peak suppression, a topic that is out of For this reason, most of the relaxation filter applications are the scope of this review.11 related to metabolic profiling of cells, tissues, and biological fluids in human or animals. Moreover, some other interesting 2.1.3 T2 versus T1r filters. Although similar efficiency is applications have been recently described in other fields obtained using T2 or T1r filters, the T1r filter has found little or no (metabolism, taxonomy, food chemistry), illustrating the high application in the analysis of complex mixtures. This is probably potential of these techniques. because T2 editing allows long relaxation periods to be completed with total signal stability, while the use of T1r filters may lead to undesirable sample heating – and loss of stability – due to the spin- 2.1 Basic concepts lock. However, T1r filtering is commonly combined with NOE In an NMR experiment, a molecule is placed under a magnetic and STD (saturation transfer difference) experiments for the field leading to the splitting of the nuclear spin levels (Zeeman elimination of protein signals in protein–ligand interaction effect). The application of a radiofrequency pulse situates the studies, and is commonly used in solid-state NMR.12 system in an excited state that immediately begins its return to equilibrium through a complex process known as relaxation. † It must also be considered that due to the nature of the T1 filtering NMR relaxation is directly bound to the dynamics and flexibility experiment (inversion recovery experiment) some of the signals in the of the excited molecule; therefore, NMR relaxation has been experiment may appear inverted in the spectra.
80 | Nat. Prod. Rep., 2011, 28, 78–98 This journal is ª The Royal Society of Chemistry 2011 View Article Online
1 1 Fig. 1 H NMR spectra of a human blood plasma sample, (A) H with water presaturation; (B) T1-edited NMR spectrum, plotted inverted, relaxation filter 265 ms; (C) T1r-edited NMR spectrum; spin-locking time 120 ms; (D) T2-edited NMR spectroscopy; relax filter 160 ms. Reprinted from ref. 1 with permission. 2.1.4 Limitations and practical considerations of relaxation 3) Finally, when small molecules in the mixture are bound to editing. There are some considerations that must be taken into macromolecules, the ‘complex’ behaves as a single entity and account before using relaxation filters: responds to the filter as a whole. Indeed, the small molecule will be 1) The use of relaxation filters is restricted to situations where eliminated from the spectrum together with the big one, even when the relaxation times of the components are considerably a small filter – selected for the macromolecule – has being used.15 different. For example, if we have three NMR signals A, B and C in identical ratio 1/1/1 with T2 values of 10, 30 and 100 ms 2.2 Methodology and state of the art respectively, and apply a filter of 200 ms, the ratio will change to Downloaded on 30/04/2013 15:21:41. 0.1/0.3/1 (95%, 86% and 61% of attenuation respectively). The The use of relaxation-edited spectra is theoretically not restricted to 1 new signal intensities are calculated by the formula If ¼ H NMR spectroscopy, and can be applied to other nuclei. Nevertheless, the use of 13C NMR has been limited by its lower Published on 11 October 2010 http://pubs.rsc.org | doi:10.1039/C005320C Io exp( tf/T2), where If is the signal intensity after applying the T2 filter, Io is the signal intensity before filtering and tf is the T2 sensitivity. In the only example we found in the literature, Blackwell filter duration. This implies that A will be practically eliminated et al. successfully applied a T2 relaxation filter for the suppression of from the spectrum, while B will be only partially attenuated. For humic acid signals in the 13C NMR spectrum from a mineral soil.16 this reason, if precise quantitative information is required, we have to introduce a correction on the signal intensities based on 2.2.1 Pulse sequences: Inversion recovery and spin-echo. The the different attenuation of the signals coming from protons with pulse sequences commonly used for T1, T2 or T1r filters are those different relaxation times.‡13 used for the determination of relaxation times – namely, inver- In those cases where the signals to be suppressed are the most sion-recovery for the longitudinal relaxation time T1, spin-echo intense (such as in blood plasma, Fig. 1) the loss of signal for T2 measurements, and a simple spin-lock pulse for the experienced by those signals whose suppression is not desired is determination of T1r. In the case of biological fluids where compensated by the increased receiver gain. the sample is dissolved in water with a small proportion of D2O, 2) Additionally, the relaxation times are not only dependent on the problem of dynamic range forces these pulse sequences to be the overall rotational correlation time but also on the local combined with solvent suppression (usually by presaturation).4–8 motions. Different parts of a molecule may have very different Convenient pulse sequences are implemented in the NMR local mobility (i.e. flexibility); therefore different relaxation times libraries from Bruker and Varian, but they can also be taken and different sensitivity to the filter result: some parts of the from NMR books. Furthermore, adequate protocols have been molecule may remain present in the spectra after filtering while recently described.4,5 However, it is interesting to highlight some others are suppressed. Such is the case with the N-acetyl signals practical differences between the different spin-echo pulse of N-acetylglucosamine and N-acetylneuraminic acid residues in sequences and some combinations of relaxation filters with other mobile carbohydrate side-chains of glycoproteins.14 NMR methodologies.