Inhibitory Enzymes SHIP1 and Csk Autoinflammatory Disease, Interacts
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Deciphering the Functions of Ets2, Pten and P53 in Stromal Fibroblasts in Multiple
Deciphering the Functions of Ets2, Pten and p53 in Stromal Fibroblasts in Multiple Breast Cancer Models DISSERTATION Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of The Ohio State University By Julie Wallace Graduate Program in Molecular, Cellular and Developmental Biology The Ohio State University 2013 Dissertation Committee: Michael C. Ostrowski, PhD, Advisor Gustavo Leone, PhD Denis Guttridge, PhD Dawn Chandler, PhD Copyright by Julie Wallace 2013 Abstract Breast cancer is the second most common cancer in American women, and is also the second leading cause of cancer death in women. It is estimated that nearly a quarter of a million new cases of invasive breast cancer will be diagnosed in women in the United States this year, and approximately 40,000 of these women will die from breast cancer. Although death rates have been on the decline for the past decade, there is still much we need to learn about this disease to improve prevention, detection and treatment strategies. The majority of early studies have focused on the malignant tumor cells themselves, and much has been learned concerning mutations, amplifications and other genetic and epigenetic alterations of these cells. However more recent work has acknowledged the strong influence of tumor stroma on the initiation, progression and recurrence of cancer. Under normal conditions this stroma has been shown to have protective effects against tumorigenesis, however the transformation of tumor cells manipulates this surrounding environment to actually promote malignancy. Fibroblasts in particular make up a significant portion of this stroma, and have been shown to impact various aspects of tumor cell biology. -
Genetic Association of PTPN22 Polymorphisms with Autoimmune
www.nature.com/scientificreports OPEN Genetic Association of PTPN22 Polymorphisms with Autoimmune Hepatitis and Primary Biliary Received: 08 April 2016 Accepted: 23 June 2016 Cholangitis in Japan Published: 11 July 2016 Takeji Umemura1, Satoru Joshita1, Tomoo Yamazaki1, Michiharu Komatsu1, Yoshihiko Katsuyama2, Kaname Yoshizawa3, Eiji Tanaka1 & Masao Ota4 Autoimmune hepatitis (AIH) and primary biliary cholangitis (PBC) are liver-specific autoimmune conditions that are characterized by chronic hepatic damage and often lead to cirrhosis and hepatic failure. Specifically, theprotein tyrosine phosphatase N22 (PTPN22) gene encodes the lymphoid protein tyrosine phosphatase, which acts as a negative regulator of T-cell receptor signaling. A missense single nucleotide polymorphism (SNP) (rs2476601) in PTPN22 has been linked to numerous autoimmune diseases in Caucasians. In the present series, nine SNPs in the PTPN22 gene were analyzed in 166 patients with AIH, 262 patients with PBC, and 322 healthy controls in the Japanese population using TaqMan assays. Although the functional rs3996649 and rs2476601 were non-polymorphic in all subject groups, the frequencies of the minor alleles at rs1217412, rs1217388, rs1217407, and rs2488458 were significantly decreased in AIH patients as compared with controls (allPc < 0.05). There were no significant relationships with PTPN22 SNPs in PBC patients. Interestingly, the AAGTCCC haplotype was significantly associated with resistance to both AIH (odds ratio [OR] = 0.58, P = 0.0067) and PBC (OR = 0.58, P = 0.0048). SNPs in the PTPN22 gene may therefore play key roles in the genetic resistance to autoimmune liver disease in the Japanese. Autoimmune diseases are characterized by an aberrant immune response to self-antigens. Although genetic factors contribute to disease susceptibility and severity, the mechanisms of disease initiation and persis- tence remain poorly understood. -
2Oc3 Lichtarge Lab 2006
Pages 1–5 2oc3 Evolutionary trace report by report maker September 25, 2008 4.3.3 DSSP 5 4.3.4 HSSP 5 4.3.5 LaTex 5 4.3.6 Muscle 5 4.3.7 Pymol 5 4.4 Note about ET Viewer 5 4.5 Citing this work 5 4.6 About report maker 5 4.7 Attachments 5 1 INTRODUCTION From the original Protein Data Bank entry (PDB id 2oc3): Title: Crystal structure of the catalytic domain of human protein tyrosine phosphatase non-receptor type 18 Compound: Mol id: 1; molecule: tyrosine-protein phosphatase non- receptor type 18; chain: a; synonym: brain-derived phosphatase; ec: CONTENTS 3.1.3.48; engineered: yes Organism, scientific name: 1 Introduction 1 Homo Sapiens; 2oc3 contains a single unique chain 2oc3A (279 residues long). 2 Chain 2oc3A 1 2.1 Q53P42 overview 1 2.2 Multiple sequence alignment for 2oc3A 1 2.3 Residue ranking in 2oc3A 1 2.4 Top ranking residues in 2oc3A and their position on the structure 1 2 CHAIN 2OC3A 2.4.1 Clustering of residues at 25% coverage. 2 2.1 Q53P42 overview 2.4.2 Possible novel functional surfaces at 25% From SwissProt, id Q53P42, 96% identical to 2oc3A: coverage. 2 Description: Hypothetical protein PTPN18. Organism, scientific name: Homo sapiens (Human). 3 Notes on using trace results 3 Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; 3.1 Coverage 3 Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; 3.2 Known substitutions 3 Catarrhini; Hominidae; Homo. 3.3 Surface 4 3.4 Number of contacts 4 3.5 Annotation 4 3.6 Mutation suggestions 4 2.2 Multiple sequence alignment for 2oc3A 4 Appendix 4 For the chain 2oc3A, the alignment 2oc3A.msf (attached) with 49 4.1 File formats 4 sequences was used. -
Rs2476601 T Allele (R620W) Defines High-Risk PTPN22 Type I Diabetes-Associated Haplotypes with Preliminary Evidence for an Additional Protective Haplotype
Genes and Immunity (2009) 10, S21–S26 & 2009 Macmillan Publishers Limited All rights reserved 1466-4879/09 $32.00 www.nature.com/gene ORIGINAL ARTICLE rs2476601 T allele (R620W) defines high-risk PTPN22 type I diabetes-associated haplotypes with preliminary evidence for an additional protective haplotype AK Steck1, EE Baschal1, JM Jasinski1, BO Boehm2, N Bottini3, P Concannon4, C Julier5, G Morahan6, JA Noble7, C Polychronakos8, JX She9, GS Eisenbarth1 and the Type I Diabetes Genetics Consortium 1Barbara Davis Center for Childhood Diabetes, University of Colorado Denver, Aurora, CO, USA; 2Department of Internal Medicine, Ulm University, Ulm, Germany; 3Institute for Genetic Medicine, University of Southern California, Los Angeles, CA, USA; 4Department of Biochemistry and Molecular Genetics and Center for Public Health Genomics, University of Virginia, Charlottesville, VA, USA; 5Ge´ne´tique des Maladies Infectieuses et Autoimmunes, Institut Pasteur, Paris, France; 6Western Australian Institute for Medical Research, The University of Western Australia, Perth, Australia; 7Children’s Hospital Oakland Research Institute, Oakland, CA, USA; 8Department of Human Genetics, The McGill University Health Center, Montreal, Quebec, Canada and 9Center for Biotechnology and Genomic Medicine, Medical College of Georgia, Augusta, GA, USA Protein tyrosine phosphatase non-receptor type 22 (PTPN22) is the third major locus affecting risk of type I diabetes (T1D), after HLA-DR/DQ and INS. The most associated single-nucleotide polymorphism (SNP), rs2476601, has a C-4T variant and results in an arginine (R) to tryptophan (W) amino acid change at position 620. To assess whether this, or other specific variants, are responsible for T1D risk, the Type I Diabetes Genetics Consortium analyzed 28 PTPN22 SNPs in 2295 affected sib-pair (ASP) families. -
The Role of Protein Tyrosine Phosphatases in Inflammasome
International Journal of Molecular Sciences Review The Role of Protein Tyrosine Phosphatases in Inflammasome Activation Marianne R. Spalinger 1,* , Marlene Schwarzfischer 1 and Michael Scharl 1,2 1 Department of Gastroenterology and Hepatology, University Hospital Zurich, 8091 Zurich, Switzerland; Marlene.Schwarzfi[email protected] (M.S.); [email protected] (M.S.) 2 Zurich Center for Integrative Human Physiology, University of Zurich, 8006 Zurich, Switzerland * Correspondence: [email protected]; Tel.: +41-44-255-3794 Received: 16 July 2020; Accepted: 29 July 2020; Published: 31 July 2020 Abstract: Inflammasomes are multi-protein complexes that mediate the activation and secretion of the inflammatory cytokines IL-1β and IL-18. More than half a decade ago, it has been shown that the inflammasome adaptor molecule, ASC requires tyrosine phosphorylation to allow effective inflammasome assembly and sustained IL-1β/IL-18 release. This finding provided evidence that the tyrosine phosphorylation status of inflammasome components affects inflammasome assembly and that inflammasomes are subjected to regulation via kinases and phosphatases. In the subsequent years, it was reported that activation of the inflammasome receptor molecule, NLRP3, is modulated via tyrosine phosphorylation as well, and that NLRP3 de-phosphorylation at specific tyrosine residues was required for inflammasome assembly and sustained IL-1β/IL-18 release. These findings demonstrated the importance of tyrosine phosphorylation as a key modulator of inflammasome activity. Following these initial reports, additional work elucidated that the activity of several inflammasome components is dictated via their phosphorylation status. Particularly, the action of specific tyrosine kinases and phosphatases are of critical importance for the regulation of inflammasome assembly and activity. -
Protein Tyrosine Phosphatase Sigma (Ptpσ) Targets Apical Junction Complex Proteins in the Intestine and Modulates
Protein tyrosine phosphatase sigma (PTPσ) targets apical junction complex proteins in the intestine and modulates epithelial permeability. by Ryan Murchie A thesis submitted in conformity with the requirements for the degree of Master of Science Department of Biochemistry University of Toronto © Copyright by Ryan Murchie 2013 Protein tyrosine phosphatase sigma (PTPσ) targets apical junction complex proteins in the intestine and modulates epithelial permeability. Ryan Murchie Master of Science Department of Biochemistry University of Toronto 2012 Abstract Protein tyrosine phosphatase sigma (PTPσ), encoded by PTPRS, was shown previously by us to contain SNP polymorphisms that can confer susceptibility to inflammatory bowel disease (IBD). PTPσ(-/-) mice exhibit an IBD-like phenotype and show increased susceptibility to acute models of murine colitis. The function of PTPσ in the intestine is uncharacterized. Here, I show an intestinal epithelial barrier defect in the PTPσ(-/-) mouse, demonstrated by a decrease in trans-epithelial resistance and a leaky intestinal epithelium that was determined by in vivo tracer analysis. We identified several putative PTPσ intestinal substrates; among these were several proteins that form and regulate the apical junction complex, including ezrin. My results show that ezrin binds to and undergoes tyrosine de-phosphorylation by PTPσ in vitro, suggesting it is a direct substrate for this PTP. The results suggest a role for PTPσ as a positive regulator of epithelial barrier integrity in the intestine. The proteins identified in the screen, including ezrin, suggest that PTPσ may modulate epithelial cell adhesion through the targeting of AJC-associated proteins, a process impaired in IBD. ii Acknowledgements First and foremost, I would like to thank my supervisors Dr. -
The Balance of Expression of PTPN22 Splice Forms Is Significantly Different
Ronninger et al. Genome Medicine 2012, 4:2 http://genomemedicine.com/content/4/1/2 RESEARCH Open Access The balance of expression of PTPN22 splice forms is significantly different in rheumatoid arthritis patients compared with controls Marcus Ronninger1*†, Yongjing Guo2†, Klementy Shchetynsky1, Andrew Hill3, Mohsen Khademi4, Tomas Olsson4, Padmalatha S Reddy3, Maria Seddighzadeh1, James D Clark2, Lih-Ling Lin2, Margot O’Toole2 and Leonid Padyukov1 Abstract Background: The R620W variant in protein tyrosine phosphatase non-receptor 22 (PTPN22) is associated with rheumatoid arthritis (RA). The PTPN22 gene has alternatively spliced transcripts and at least two of the splice forms have been confirmed to encode different PTPN22 (LYP) proteins, but detailed information regarding expression of these is lacking, especially with regard to autoimmune diseases. Methods: We have investigated the mRNA expression of known PTPN22 splice forms with TaqMan real-time PCR in relation to ZNF592 as an endogenous reference in peripheral blood cells from three independent cohorts with RA patients (n = 139) and controls (n = 111) of Caucasian origin. Polymorphisms in the PTPN22 locus (25 SNPs) and phenotypic data (gender, disease activity, ACPA and RF status) were used for analysis. Additionally, we addressed possible effects of methotrexate treatment on PTPN22 expression. Results: We found consistent differences in the expression of the PTPN22 splice forms in unstimulated peripheral blood mononuclear cells between RA patients and normal controls. This difference was more pronounced when comparing the ratio of splice forms and was not affected by methotrexate treatment. Conclusions: Our data show that RA patients and healthy controls have a shift in balance of expression of splice forms derived from the PTPN22 gene. -
PTPN18 Rabbit Pab
Leader in Biomolecular Solutions for Life Science PTPN18 Rabbit pAb Catalog No.: A8487 Basic Information Background Catalog No. The protein encoded by this gene is a member of the protein tyrosine phosphatase (PTP) A8487 family. PTPs are known to be signaling molecules that regulate a variety of cellular processes including cell growth, differentiation, the mitotic cycle, and oncogenic Observed MW transformation. This PTP contains a PEST motif, which often serves as a protein-protein 60kDa interaction domain, and may be related to protein intracellular half-live. This protein can differentially dephosphorylate autophosphorylated tyrosine kinases that are Calculated MW overexpressed in tumor tissues, and it appears to regulate HER2, a member of the 38kDa/50kDa epidermal growth factor receptor family of receptor tyrosine kinases. Two transcript variants encoding different isoforms have been found for this gene. Category Primary antibody Applications WB Cross-Reactivity Human Recommended Dilutions Immunogen Information WB 1:500 - 1:2000 Gene ID Swiss Prot 26469 Q99952 Immunogen Recombinant fusion protein containing a sequence corresponding to amino acids 1-210 of human PTPN18 (NP_001135842.1). Synonyms PTPN18;BDP1;PTP-HSCF Contact Product Information www.abclonal.com Source Isotype Purification Rabbit IgG Affinity purification Storage Store at -20℃. Avoid freeze / thaw cycles. Buffer: PBS with 0.02% sodium azide,50% glycerol,pH7.3. Validation Data Western blot analysis of extracts of various cell lines, using PTPN18 antibody (A8487) at 1:1000 dilution. Secondary antibody: HRP Goat Anti-Rabbit IgG (H+L) (AS014) at 1:10000 dilution. Lysates/proteins: 25ug per lane. Blocking buffer: 3% nonfat dry milk in TBST. Detection: ECL Basic Kit (RM00020). -
Deciphering the Link Between PTPN22 and Autoimmunity
Deciphering the link between PTPN22 and Autoimmunity Pratigya Gautam Department of Infection, Immunity and Biochemistry School of Medicine Cardiff University A dissertation submitted to Cardiff University in candidature for the degree of Doctor of Philosophy September 2011 UMI N um ber: U 584572 All rights re se rv e d INFORMATION TO ALL USERS The quality of this reproduction is dependent upon the quality of the copy submitted. In the unlikely event that the author did not send a complete manuscript and there are missing pages, these will be noted. Also, if material had to be removed, a note will indicate th e deletion. Dissertation Publishing UMI U 584572 Published by ProQuest LLC 2013. Copyright in the Dissertation held by the Author. Microform Edition © ProQuest LLC. All rights reserved. This work is protected against unauthorized copying under Title 17, United States Code. ProQuest LLC 789 East Eisenhower Parkway P.O. Box 1346 Ann Arbor, Ml 48106-1346 DECLARATION This work has not previously been accepted in substance for any degree and is not concurrently submittal in candidature for any degree. S ig n e d ......'/'j t '' ..................................... (candidate) Date ...... STATEMENT 1 This thesis is being submitted in partial fulfillment of the requirements for the degree of ^....(insert MCh, MD, MPhil, PhD etc, as appropriate) Signed (candidate) Date STATEMENT 2 This thesis is the result of my own independent work/investigation, except where otherwise stated. Other sources are Acknowledged by explicit references. (candidate)Signed ± m j± . STATEMENT 3 I hereby give consent for my thesis, if accepted, to be available for photocopying and for inter-library loan, and for the title and summary to be made available to outside organisations, Signed (candidate) Date 2 Acknowledgements This project would not have been possible without the generous help of many people. -
PTPN22 Is a Critical Regulator of Fcγ Receptor–Mediated Neutrophil
PTPN22 Is a Critical Regulator of Fcγ Receptor−Mediated Neutrophil Activation Sonja Vermeren, Katherine Miles, Julia Y. Chu, Donald Salter, Rose Zamoyska and Mohini Gray This information is current as of October 3, 2021. J Immunol 2016; 197:4771-4779; Prepublished online 2 November 2016; doi: 10.4049/jimmunol.1600604 http://www.jimmunol.org/content/197/12/4771 Downloaded from Supplementary http://www.jimmunol.org/content/suppl/2016/11/01/jimmunol.160060 Material 4.DCSupplemental References This article cites 53 articles, 27 of which you can access for free at: http://www.jimmunol.org/content/197/12/4771.full#ref-list-1 http://www.jimmunol.org/ Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision • No Triage! Every submission reviewed by practicing scientists by guest on October 3, 2021 • Fast Publication! 4 weeks from acceptance to publication *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2016 The Authors All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. The Journal of Immunology PTPN22 Is a Critical Regulator of Fcg Receptor–Mediated Neutrophil Activation Sonja Vermeren,* Katherine Miles,* Julia Y. Chu,* Donald Salter,† Rose Zamoyska,‡ and Mohini Gray* Neutrophils act as a first line of defense against bacterial and fungal infections, but they are also important effectors of acute and chronic inflammation. -
Live-Cell Imaging Rnai Screen Identifies PP2A–B55α and Importin-Β1 As Key Mitotic Exit Regulators in Human Cells
LETTERS Live-cell imaging RNAi screen identifies PP2A–B55α and importin-β1 as key mitotic exit regulators in human cells Michael H. A. Schmitz1,2,3, Michael Held1,2, Veerle Janssens4, James R. A. Hutchins5, Otto Hudecz6, Elitsa Ivanova4, Jozef Goris4, Laura Trinkle-Mulcahy7, Angus I. Lamond8, Ina Poser9, Anthony A. Hyman9, Karl Mechtler5,6, Jan-Michael Peters5 and Daniel W. Gerlich1,2,10 When vertebrate cells exit mitosis various cellular structures can contribute to Cdk1 substrate dephosphorylation during vertebrate are re-organized to build functional interphase cells1. This mitotic exit, whereas Ca2+-triggered mitotic exit in cytostatic-factor- depends on Cdk1 (cyclin dependent kinase 1) inactivation arrested egg extracts depends on calcineurin12,13. Early genetic studies in and subsequent dephosphorylation of its substrates2–4. Drosophila melanogaster 14,15 and Aspergillus nidulans16 reported defects Members of the protein phosphatase 1 and 2A (PP1 and in late mitosis of PP1 and PP2A mutants. However, the assays used in PP2A) families can dephosphorylate Cdk1 substrates in these studies were not specific for mitotic exit because they scored pro- biochemical extracts during mitotic exit5,6, but how this relates metaphase arrest or anaphase chromosome bridges, which can result to postmitotic reassembly of interphase structures in intact from defects in early mitosis. cells is not known. Here, we use a live-cell imaging assay and Intracellular targeting of Ser/Thr phosphatase complexes to specific RNAi knockdown to screen a genome-wide library of protein substrates is mediated by a diverse range of regulatory and targeting phosphatases for mitotic exit functions in human cells. We subunits that associate with a small group of catalytic subunits3,4,17. -
The Phosphatase JKAP/DUSP22 Inhibits T-Cell Receptor Signalling and Autoimmunity by Inactivating Lck
ARTICLE Received 8 Aug 2013 | Accepted 11 Mar 2014 | Published 9 Apr 2014 DOI: 10.1038/ncomms4618 The phosphatase JKAP/DUSP22 inhibits T-cell receptor signalling and autoimmunity by inactivating Lck Ju-Pi Li1, Chia-Yu Yang1,Ã, Huai-Chia Chuang1,Ã, Joung-Liang Lan2,3,4,Ã, Der-Yuan Chen2,5,Ã, Yi-Ming Chen2,5,Ã, Xiaohong Wang6, Alice J. Chen6,7, John W. Belmont7 & Tse-Hua Tan1,6 JNK pathway-associated phosphatase (JKAP, also known as DUSP22 or JSP-1) is a JNK activator. The in vivo role of JKAP in immune regulation remains unclear. Here we report that JKAP directly inactivates Lck by dephosphorylating tyrosine-394 residue during T-cell receptor (TCR) signalling. JKAP-knockout T cells display enhanced cell proliferation and cytokine production. JKAP-knockout mice show enhanced T-cell-mediated immune responses and are more susceptible to experimental autoimmune encephalomyelitis (EAE). In addition, the recipient mice that are adoptively transferred with JKAP-knockout T cells show exacerbated EAE symptoms. Aged JKAP-knockout mice spontaneously develop inflammation and autoimmunity. Thus, our results indicate that JKAP is an important phosphatase that inactivates Lck in the TCR signalling turn-off stage, leading to suppression of T-cell-mediated immunity and autoimmunity. 1 Immunology Research Center, National Health Research Institutes, Zhunan 35053, Taiwan. 2 Division of Allergy, Immunology, and Rheumatology, Taichung Veterans General Hospital, Taichung 40705, Taiwan. 3 Department of Medicine, China Medical University, Taichung 40402, Taiwan. 4 Division of Rheumatology & Immunology, Department of Internal Medicine, China Medical University Hospital, Taichung 40402, Taiwan. 5 Faculty of Medicine, National Yang-Ming University, Taipei 11221, Taiwan.