Muscle LIM Protein/CSRP3: a Mechanosensor with a Role in Autophagy
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The Role of Z-Disc Proteins in Myopathy and Cardiomyopathy
International Journal of Molecular Sciences Review The Role of Z-disc Proteins in Myopathy and Cardiomyopathy Kirsty Wadmore 1,†, Amar J. Azad 1,† and Katja Gehmlich 1,2,* 1 Institute of Cardiovascular Sciences, College of Medical and Dental Sciences, University of Birmingham, Birmingham B15 2TT, UK; [email protected] (K.W.); [email protected] (A.J.A.) 2 Division of Cardiovascular Medicine, Radcliffe Department of Medicine and British Heart Foundation Centre of Research Excellence Oxford, University of Oxford, Oxford OX3 9DU, UK * Correspondence: [email protected]; Tel.: +44-121-414-8259 † These authors contributed equally. Abstract: The Z-disc acts as a protein-rich structure to tether thin filament in the contractile units, the sarcomeres, of striated muscle cells. Proteins found in the Z-disc are integral for maintaining the architecture of the sarcomere. They also enable it to function as a (bio-mechanical) signalling hub. Numerous proteins interact in the Z-disc to facilitate force transduction and intracellular signalling in both cardiac and skeletal muscle. This review will focus on six key Z-disc proteins: α-actinin 2, filamin C, myopalladin, myotilin, telethonin and Z-disc alternatively spliced PDZ-motif (ZASP), which have all been linked to myopathies and cardiomyopathies. We will summarise pathogenic variants identified in the six genes coding for these proteins and look at their involvement in myopathy and cardiomyopathy. Listing the Minor Allele Frequency (MAF) of these variants in the Genome Aggregation Database (GnomAD) version 3.1 will help to critically re-evaluate pathogenicity based on variant frequency in normal population cohorts. -
Bioinformatic Analysis of Structure and Function of LIM Domains of Human Zyxin Family Proteins
International Journal of Molecular Sciences Article Bioinformatic Analysis of Structure and Function of LIM Domains of Human Zyxin Family Proteins M. Quadir Siddiqui 1,† , Maulik D. Badmalia 1,† and Trushar R. Patel 1,2,3,* 1 Alberta RNA Research and Training Institute, Department of Chemistry and Biochemistry, University of Lethbridge, 4401 University Drive, Lethbridge, AB T1K 3M4, Canada; [email protected] (M.Q.S.); [email protected] (M.D.B.) 2 Department of Microbiology, Immunology and Infectious Disease, Cumming School of Medicine, University of Calgary, 3330 Hospital Drive, Calgary, AB T2N 4N1, Canada 3 Li Ka Shing Institute of Virology, University of Alberta, Edmonton, AB T6G 2E1, Canada * Correspondence: [email protected] † These authors contributed equally to the work. Abstract: Members of the human Zyxin family are LIM domain-containing proteins that perform critical cellular functions and are indispensable for cellular integrity. Despite their importance, not much is known about their structure, functions, interactions and dynamics. To provide insights into these, we used a set of in-silico tools and databases and analyzed their amino acid sequence, phylogeny, post-translational modifications, structure-dynamics, molecular interactions, and func- tions. Our analysis revealed that zyxin members are ohnologs. Presence of a conserved nuclear export signal composed of LxxLxL/LxxxLxL consensus sequence, as well as a possible nuclear localization signal, suggesting that Zyxin family members may have nuclear and cytoplasmic roles. The molecular modeling and structural analysis indicated that Zyxin family LIM domains share Citation: Siddiqui, M.Q.; Badmalia, similarities with transcriptional regulators and have positively charged electrostatic patches, which M.D.; Patel, T.R. -
Spatiotemporal Single-Cell Analysis Reveals Critical Roles of Mechano-Sensing Genes at the Border Zone in Remodeling After Myocardial Infarction
Spatiotemporal single-cell analysis reveals critical roles of mechano-sensing genes at the border zone in remodeling after myocardial infarction Shintaro Yamada Tokyo University https://orcid.org/0000-0002-3240-358X Toshiyuki Ko The University of Tokyo Satoshi Hatsuse The University of Tokyo Seitaro Nomura The University of Tokyo Bo Zhang The University of Tokyo Zhehao Dai The University of Tokyo https://orcid.org/0000-0002-0363-7563 Shunsuke Inoue The University of Tokyo Masayuki Kubota The University of Tokyo Kosuke Sawami The University of Tokyo Takanobu Yamada The University of Tokyo Tatsuro Sassa The University of Tokyo Mikako Katagiri The University of Tokyo Kanna Fujita The University of Tokyo Manami Katoh The University of Tokyo Masamichi Ito The University of Tokyo Mutsuo Harada Page 1/21 The University of Tokyo Haruhiro Toko The University of Tokyo Norifumi Takeda The University of Tokyo https://orcid.org/0000-0003-4818-3347 Hiroyuki Morita The University of Tokyo Hiroyuki Aburatani The University of Tokyo Issei Komuro ( [email protected] ) The University of Tokyo Graduate School of Medicine Article Keywords: spatiotemporal single-cell analysis, myocardial infarction, left ventricular remodeling. Posted Date: June 22nd, 2021 DOI: https://doi.org/10.21203/rs.3.rs-620498/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 2/21 Abstract The left ventricular remodeling after myocardial infarction (MI) causes heart failure, but its underlying mechanisms remain largely unknown. Here, we performed an integrative analysis of spatial transcriptomics and single cell RNA-seq in murine MI model and found that mechanical stress-response genes are expressed at the border zone and play a critical role in left ventricular remodeling after MI. -
Identification of a Variant Hotspot in MYBPC3 and of a Novel CSRP3
ORIGINAL ARTICLE Identification of a variant hotspot inMYBPC3 and of a novel CSRP3 autosomal recessive alteration in a cohort of Polish patients with hypertrophic cardiomyopathy Martina Lipari1, Ewa Wypasek2,3, Marek Karpiński2, Lidia Tomkiewicz ‑Pająk2,4, Luigi Laino1, Francesco Binni1, Diana Giannarelli5, Paweł Rubiś2,4, Paweł Petkow ‑Dimitrow6,7, Anetta Undas2,7, Paola Grammatico1, Irene Bottillo1 1 Division of Medical Genetics, Department of Molecular Medicine, Sapienza University, San Camillo ‑Forlanini Hospital, Rome, Italy 2 John Paul II Hospital, Kraków, Poland 3 Faculty of Medicine and Health Sciences, Andrzej Frycz Modrzewski Krakow University, Kraków, Poland 4 Department of Cardiac Vascular Diseases, Institute of Cardiology, Jagiellonian University Medical College, Kraków, Poland 5 Biostatistical Unit, Regina Elena National Cancer Institute, Istituti di Ricovero e Cura a Carattere Scientifico (IRCCS), Rome, Italy 6 2nd Department of Cardiology, Institute of Cardiology, Jagiellonian University Medical College, Kraków, Poland 7 Institute of Cardiology, Jagiellonian University Medical College, Kraków, Poland KEY WORDS ABSTRACT CSRP3 human KO, INTRODUCTION Hypertrophic cardiomyopathy (HCM) is a heart disorder caused by autosomal dominant hypertrophic alterations affecting both sarcomeric genes and other nonsarcomeric loci in a minority of cases. However, cardiomyopathy, in some patients, the occurrence of the causal pathogenic variant or variants in homozygosity, compound MYBPC3 founder heterozygosity, or double heterozygosity has also been described. Most of the HCM pathogenic variants mutation, Polish are missense and unique, but truncating mutations of the MYBPC3 gene have been reported as founder population pathogenic variants in populations from Finland, France, Japan, Iceland, Italy, and the Netherlands. OBJECTIVES This study aimed to assess the genetic background of HCM in a cohort of Polish patients. -
CSRP3 Antibody Order 021-34695924 [email protected] Support 400-6123-828 50Ul [email protected] 100 Ul √ √ Web
TD12922 CSRP3 Antibody Order 021-34695924 [email protected] Support 400-6123-828 50ul [email protected] 100 uL √ √ Web www.ab-mart.com.cn Description: Positive regulator of myogenesis. Acts as cofactor for myogenic bHLH transcription factors such as MYOD1, and probably MYOG and MYF6. Enhances the DNA-binding activity of the MYOD1:TCF3 isoform E47 complex and may promote formation of a functional MYOD1:TCF3 isoform E47:MEF2A complex involved in myogenesis (By similarity). Plays a crucial and specific role in the organization of cytosolic structures in cardiomyocytes. Could play a role in mechanical stretch sensing. May be a scaffold protein that promotes the assembly of interacting proteins at Z-line structures. It is essential for calcineurin anchorage to the Z line. Required for stress-induced calcineurin-NFAT activation (By similarity). The role in regulation of cytoskeleton dynamics by association with CFL2 is reported conflictingly: Shown to enhance CFL2-mediated F-actin depolymerization dependent on the CSRP3:CFL2 molecular ratio, and also shown to reduce the ability of CLF1 and CFL2 to enhance actin depolymerization. Proposed to contribute to the maintenance of muscle cell integerity through an actin-based mechanism. Can directly bind to actin filaments, cross-link actin filaments into bundles without polarity selectivity and protect them from dilution- and cofilin-mediated depolymerization; the function seems to involve its self-association. In vitro can inhibit PKC/PRKCA activity. Proposed to be involved in cardiac stress signaling by down-regulating excessive PKC/PRKCA signaling (By similarity).May play a role in early sarcomere organization. Overexpression in myotubes negatively regulates myotube differentiation. -
Alpha;-Actinin-4 Promotes Metastasis in Gastric Cancer
Laboratory Investigation (2017) 97, 1084–1094 © 2017 USCAP, Inc All rights reserved 0023-6837/17 α-Actinin-4 promotes metastasis in gastric cancer Xin Liu and Kent-Man Chu Metastasis increases the mortality rate of gastric cancer, which is the third leading cause of cancer-associated deaths worldwide. This study aims to identify the genes promoting metastasis of gastric cancer (GC). A human cell motility PCR array was used to analyze a pair of tumor and non-tumor tissue samples from a patient with stage IV GC (T3N3M1). Expression of the dysregulated genes was then evaluated in GC tissue samples (n = 10) and cell lines (n =6) via qPCR. Expression of α-actinin-4 (ACTN4) was validated in a larger sample size (n = 47) by qPCR, western blot and immunohistochemistry. Knockdown of ACTN4 with specific siRNAs was performed in GC cells, and adhesion assays, transwell invasion assays and migration assays were used to evaluate the function of these cells. Expression of potential targets of ACTN4 were then evaluated by qPCR. Thirty upregulated genes (greater than twofold) were revealed by the PCR array. We focused on ACTN4 because it was upregulated in 6 out of 10 pairs of tissue samples and 5 out of 6 GC cell lines. Further study indicated that ACTN4 was upregulated in 22/32 pairs of tissue samples at stage III & IV (P = 0.0069). Knockdown of ACTN4 in GC cells showed no significant effect on cell proliferation, but significantly increased cell-matrix adhesion, as well as reduced migration and invasion of AGS, MKN7 and NCI-N87 cells. -
Role and Regulation of the P53-Homolog P73 in the Transformation of Normal Human Fibroblasts
Role and regulation of the p53-homolog p73 in the transformation of normal human fibroblasts Dissertation zur Erlangung des naturwissenschaftlichen Doktorgrades der Bayerischen Julius-Maximilians-Universität Würzburg vorgelegt von Lars Hofmann aus Aschaffenburg Würzburg 2007 Eingereicht am Mitglieder der Promotionskommission: Vorsitzender: Prof. Dr. Dr. Martin J. Müller Gutachter: Prof. Dr. Michael P. Schön Gutachter : Prof. Dr. Georg Krohne Tag des Promotionskolloquiums: Doktorurkunde ausgehändigt am Erklärung Hiermit erkläre ich, dass ich die vorliegende Arbeit selbständig angefertigt und keine anderen als die angegebenen Hilfsmittel und Quellen verwendet habe. Diese Arbeit wurde weder in gleicher noch in ähnlicher Form in einem anderen Prüfungsverfahren vorgelegt. Ich habe früher, außer den mit dem Zulassungsgesuch urkundlichen Graden, keine weiteren akademischen Grade erworben und zu erwerben gesucht. Würzburg, Lars Hofmann Content SUMMARY ................................................................................................................ IV ZUSAMMENFASSUNG ............................................................................................. V 1. INTRODUCTION ................................................................................................. 1 1.1. Molecular basics of cancer .......................................................................................... 1 1.2. Early research on tumorigenesis ................................................................................. 3 1.3. Developing -
Actin Cytoskeleton and Regulation of Tgfβ Signaling: Exploring Their Links
biomolecules Review Actin Cytoskeleton and Regulation of TGFβ Signaling: Exploring Their Links Roberta Melchionna 1,†, Paola Trono 1,2,†, Annalisa Tocci 1 and Paola Nisticò 1,* 1 Tumor Immunology and Immunotherapy Unit, IRCCS Regina Elena National Cancer Institute, via Chianesi 53, 00144 Rome, Italy; [email protected] (R.M.); [email protected] (P.T.); [email protected] (A.T.) 2 Institute of Biochemistry and Cell Biology, National Research Council, via Ramarini 32, 00015 Monterotondo Scalo, Rome, Italy * Correspondence: [email protected]; Tel.: +39-0652662539 † These authors contributed equally to this paper. Abstract: Human tissues, to maintain their architecture and function, respond to injuries by activating intricate biochemical and physical mechanisms that regulates intercellular communication crucial in maintaining tissue homeostasis. Coordination of the communication occurs through the activity of different actin cytoskeletal regulators, physically connected to extracellular matrix through integrins, generating a platform of biochemical and biomechanical signaling that is deregulated in cancer. Among the major pathways, a controller of cellular functions is the cytokine transforming growth factor β (TGFβ), which remains a complex and central signaling network still to be interpreted and explained in cancer progression. Here, we discuss the link between actin dynamics and TGFβ signaling with the aim of exploring their aberrant interaction in cancer. Keywords: actin cytoskeleton; actin-binding proteins; TGFβ; extracellular matrix; tumor microenvi- Citation: Melchionna, R.; Trono, P.; ronment Tocci, A.; Nisticò, P. Actin Cytoskeleton and Regulation of TGFβ Signaling: Exploring Their Links. Biomolecules 2021, 11, 336. 1. Introduction https://doi.org/10.3390/biom11020336 Actin dynamics critically affect different aspects of human health and disease, ranging Academic Editor: Vladimir from embryonic development to wound repair, inflammation, and cancer [1]. -
Effects of Delayed NSAID Administration After Experimental Eccentric Contraction Injury – a Cellular and Proteomics Study Laura Bond Boise State University
Boise State University ScholarWorks Biology Faculty Publications and Presentations Department of Biological Sciences 2-28-2017 Effects of Delayed NSAID Administration After Experimental Eccentric Contraction Injury – A Cellular and Proteomics Study Laura Bond Boise State University This document was originally published by Public Library of Science (PLOS) in PLOS ONE. This work is provided under a Creative Commons Public Domain 1.0 license. Details regarding the use of this work can be found at: http://creativecommons.org/publicdomain/zero/1.0/. doi: http://dx.doi.org/10.1371/journal.pone.0172486 RESEARCH ARTICLE Effects of delayed NSAID administration after experimental eccentric contraction injury ± A cellular and proteomics study Amy E. Bryant1,2*, Michael J. Aldape1,3, Clifford R. Bayer1, Eva J. Katahira1, Laura Bond4, Carrie D. Nicora5, Thomas L. Fillmore5, Therese R. W. Clauss5, Thomas O. Metz5, Bobbie- Jo Webb-Robertson5, Dennis L. Stevens1,2 1 U.S. Department of Veterans Affairs, Office of Research and Development, Boise, ID, United States of America, 2 University of Washington School of Medicine, Seattle, WA, United States of America, a1111111111 3 Northwest Nazarene University, Nampa, ID, United States of America, 4 Boise State University, Boise, ID, a1111111111 United States of America, 5 Pacific Northwest National Laboratory, Richland, WA, United States of America a1111111111 a1111111111 * [email protected], [email protected] a1111111111 Abstract OPEN ACCESS Background Citation: Bryant AE, Aldape MJ, Bayer CR, Katahira EJ, Bond L, Nicora CD, et al. (2017) Effects of Acute muscle injuries are exceedingly common and non-steroidal anti-inflammatory drugs delayed NSAID administration after experimental (NSAIDs) are widely consumed to reduce the associated inflammation, swelling and pain eccentric contraction injury ± A cellular and that peak 1±2 days post-injury. -
Single-Cell Transcriptomes Reveal a Complex Cellular Landscape in the Middle Ear and Differential Capacities for Acute Response to Infection
fgene-11-00358 April 9, 2020 Time: 15:55 # 1 ORIGINAL RESEARCH published: 15 April 2020 doi: 10.3389/fgene.2020.00358 Single-Cell Transcriptomes Reveal a Complex Cellular Landscape in the Middle Ear and Differential Capacities for Acute Response to Infection Allen F. Ryan1*, Chanond A. Nasamran2, Kwang Pak1, Clara Draf1, Kathleen M. Fisch2, Nicholas Webster3 and Arwa Kurabi1 1 Departments of Surgery/Otolaryngology, UC San Diego School of Medicine, VA Medical Center, La Jolla, CA, United States, 2 Medicine/Center for Computational Biology & Bioinformatics, UC San Diego School of Medicine, VA Medical Center, La Jolla, CA, United States, 3 Medicine/Endocrinology, UC San Diego School of Medicine, VA Medical Center, La Jolla, CA, United States Single-cell transcriptomics was used to profile cells of the normal murine middle ear. Clustering analysis of 6770 transcriptomes identified 17 cell clusters corresponding to distinct cell types: five epithelial, three stromal, three lymphocyte, two monocyte, Edited by: two endothelial, one pericyte and one melanocyte cluster. Within some clusters, Amélie Bonnefond, Institut National de la Santé et de la cell subtypes were identified. While many corresponded to those cell types known Recherche Médicale (INSERM), from prior studies, several novel types or subtypes were noted. The results indicate France unexpected cellular diversity within the resting middle ear mucosa. The resolution of Reviewed by: Fabien Delahaye, uncomplicated, acute, otitis media is too rapid for cognate immunity to play a major Institut Pasteur de Lille, France role. Thus innate immunity is likely responsible for normal recovery from middle ear Nelson L. S. Tang, infection. The need for rapid response to pathogens suggests that innate immune The Chinese University of Hong Kong, China genes may be constitutively expressed by middle ear cells. -
Manipulation of Focal Adhesion Signaling by Pathogenic Microbes
International Journal of Molecular Sciences Review Manipulation of Focal Adhesion Signaling by Pathogenic Microbes Korinn N. Murphy 1,2 and Amanda J. Brinkworth 2,* 1 School of Molecular Biosciences, Washington State University, Pullman, WA 99164, USA; [email protected] 2 Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE 68198, USA * Correspondence: [email protected]; Tel.: +1-402-836-9777 Abstract: Focal adhesions (FAs) serve as dynamic signaling hubs within the cell. They connect intracellular actin to the extracellular matrix (ECM) and respond to environmental cues. In doing so, these structures facilitate important processes such as cell–ECM adhesion and migration. Pathogenic microbes often modify the host cell actin cytoskeleton in their pursuit of an ideal replicative niche or during invasion to facilitate uptake. As actin-interfacing structures, FA dynamics are also intimately tied to actin cytoskeletal organization. Indeed, exploitation of FAs is another avenue by which pathogenic microbes ensure their uptake, survival and dissemination. This is often achieved through the secretion of effector proteins which target specific protein components within the FA. Molecular mimicry of the leucine–aspartic acid (LD) motif or vinculin-binding domains (VBDs) commonly found within FA proteins is a common microbial strategy. Other effectors may induce post-translational modifications to FA proteins through the regulation of phosphorylation sites or proteolytic cleavage. In this review, we present an overview of the regulatory mechanisms governing host cell FAs, and provide examples of how pathogenic microbes have evolved to co-opt them to their own advantage. Recent technological advances pose exciting opportunities for delving deeper into the mechanistic details by which pathogenic microbes modify FAs. -
A Chromosome-Centric Human Proteome Project (C-HPP) To
computational proteomics Laboratory for Computational Proteomics www.FenyoLab.org E-mail: [email protected] Facebook: NYUMC Computational Proteomics Laboratory Twitter: @CompProteomics Perspective pubs.acs.org/jpr A Chromosome-centric Human Proteome Project (C-HPP) to Characterize the Sets of Proteins Encoded in Chromosome 17 † ‡ § ∥ ‡ ⊥ Suli Liu, Hogune Im, Amos Bairoch, Massimo Cristofanilli, Rui Chen, Eric W. Deutsch, # ¶ △ ● § † Stephen Dalton, David Fenyo, Susan Fanayan,$ Chris Gates, , Pascale Gaudet, Marina Hincapie, ○ ■ △ ⬡ ‡ ⊥ ⬢ Samir Hanash, Hoguen Kim, Seul-Ki Jeong, Emma Lundberg, George Mias, Rajasree Menon, , ∥ □ △ # ⬡ ▲ † Zhaomei Mu, Edouard Nice, Young-Ki Paik, , Mathias Uhlen, Lance Wells, Shiaw-Lin Wu, † † † ‡ ⊥ ⬢ ⬡ Fangfei Yan, Fan Zhang, Yue Zhang, Michael Snyder, Gilbert S. Omenn, , Ronald C. Beavis, † # and William S. Hancock*, ,$, † Barnett Institute and Department of Chemistry and Chemical Biology, Northeastern University, Boston, Massachusetts 02115, United States ‡ Stanford University, Palo Alto, California, United States § Swiss Institute of Bioinformatics (SIB) and University of Geneva, Geneva, Switzerland ∥ Fox Chase Cancer Center, Philadelphia, Pennsylvania, United States ⊥ Institute for System Biology, Seattle, Washington, United States ¶ School of Medicine, New York University, New York, United States $Department of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, NSW, Australia ○ MD Anderson Cancer Center, Houston, Texas, United States ■ Yonsei University College of Medicine, Yonsei University,