A Systematic Review of Serological and Clinicopathological Features and Associated Risk Factors of Avian Pox
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'Risk Factors for Candidemia: a Prospective Matched Case-Control
Poissy et al. Critical Care (2020) 24:109 https://doi.org/10.1186/s13054-020-2766-1 RESEARCH Open Access Risk factors for candidemia: a prospective matched case-control study Julien Poissy1,2,3 , Lauro Damonti3,4, Anne Bignon5, Nina Khanna6, Matthias Von Kietzell7, Katia Boggian7, Dionysios Neofytos8, Fanny Vuotto9, Valérie Coiteux10, Florent Artru11, Stephan Zimmerli4, Jean-Luc Pagani12, Thierry Calandra3, Boualem Sendid2,13, Daniel Poulain2,13, Christian van Delden8, Frédéric Lamoth3,14, Oscar Marchetti3,15, Pierre-Yves Bochud3*, the FUNGINOS and Allfun French Study Groups Abstract Background: Candidemia is an opportunistic infection associated with high morbidity and mortality in patients hospitalized both inside and outside intensive care units (ICUs). Identification of patients at risk is crucial to ensure prompt antifungal therapy. We sought to assess risk factors for candidemia and death, both outside and inside ICUs. Methods: This prospective multicenter matched case-control study involved six teaching hospitals in Switzerland and France. Cases were defined by positive blood cultures for Candida sp. Controls were matched to cases using the following criteria: age, hospitalization ward, hospitalization duration, and, when applicable, type of surgery. One to three controls were enrolled by case. Risk factors were analyzed by univariate and multivariate conditional regression models, as a basis for a new scoring system to predict candidemia. Results: One hundred ninety-two candidemic patients and 411 matched controls were included. Forty-four percent of included patients were hospitalized in ICUs, and 56% were hospitalized outside ICUs. Independent risk factors for candidemia in the ICU population included total parenteral nutrition, acute kidney injury, heart disease, prior septic shock, and exposure to aminoglycoside antibiotics. -
Genomic Characterisation of a Novel Avipoxvirus Isolated from an Endangered Yellow-Eyed Penguin (Megadyptes Antipodes)
viruses Article Genomic Characterisation of a Novel Avipoxvirus Isolated from an Endangered Yellow-Eyed Penguin (Megadyptes antipodes) Subir Sarker 1,* , Ajani Athukorala 1, Timothy R. Bowden 2,† and David B. Boyle 2 1 Department of Physiology, Anatomy and Microbiology, School of Life Sciences, La Trobe University, Melbourne, VIC 3086, Australia; [email protected] 2 CSIRO Livestock Industries, Australian Animal Health Laboratory, Geelong, VIC 3220, Australia; [email protected] (T.R.B.); [email protected] (D.B.B.) * Correspondence: [email protected]; Tel.: +61-3-9479-2317; Fax: +61-3-9479-1222 † Present address: CSIRO Australian Animal Health Laboratory, Australian Centre for Disease Preparedness, Geelong, VIC 3220, Australia. Abstract: Emerging viral diseases have become a significant concern due to their potential con- sequences for animal and environmental health. Over the past few decades, it has become clear that viruses emerging in wildlife may pose a major threat to vulnerable or endangered species. Diphtheritic stomatitis, likely to be caused by an avipoxvirus, has been recognised as a signifi- cant cause of mortality for the endangered yellow-eyed penguin (Megadyptes antipodes) in New Zealand. However, the avipoxvirus that infects yellow-eyed penguins has remained uncharacterised. Here, we report the complete genome of a novel avipoxvirus, penguinpox virus 2 (PEPV2), which was derived from a virus isolate obtained from a skin lesion of a yellow-eyed penguin. The PEPV2 genome is 349.8 kbp in length and contains 327 predicted genes; five of these genes were found to be unique, while a further two genes were absent compared to shearwaterpox virus 2 (SWPV2). -
Fungal Sepsis: Optimizing Antifungal Therapy in the Critical Care Setting
Fungal Sepsis: Optimizing Antifungal Therapy in the Critical Care Setting a b,c, Alexander Lepak, MD , David Andes, MD * KEYWORDS Invasive candidiasis Pharmacokinetics-pharmacodynamics Therapy Source control Invasive fungal infections (IFI) and fungal sepsis in the intensive care unit (ICU) are increasing and are associated with considerable morbidity and mortality. In this setting, IFI are predominantly caused by Candida species. Currently, candidemia represents the fourth most common health care–associated blood stream infection.1–3 With increasingly immunocompromised patient populations, other fungal species such as Aspergillus species, Pneumocystis jiroveci, Cryptococcus, Zygomycetes, Fusarium species, and Scedosporium species have emerged.4–9 However, this review focuses on invasive candidiasis (IC). Multiple retrospective studies have examined the crude mortality in patients with candidemia and identified rates ranging from 46% to 75%.3 In many instances, this is partly caused by severe underlying comorbidities. Carefully matched, retrospective cohort studies have been undertaken to estimate mortality attributable to candidemia and report rates ranging from 10% to 49%.10–15 Resource use associated with this infection is also significant. Estimates from numerous studies suggest the added hospital cost is as much as $40,000 per case.10–12,16–20 Overall attributable costs are difficult to calculate with precision, but have been estimated to be close to 1 billion dollars in the United States annually.21 a University of Wisconsin, MFCB, Room 5218, 1685 Highland Avenue, Madison, WI 53705-2281, USA b Department of Medicine, University of Wisconsin, MFCB, Room 5211, 1685 Highland Avenue, Madison, WI 53705-2281, USA c Department of Microbiology and Immunology, University of Wisconsin, MFCB, Room 5211, 1685 Highland Avenue, Madison, WI 53705-2281, USA * Corresponding author. -
Avian Pox in Shearwaters on Lord Howe Island
Association of Avian Veterinarians Australasian Committee Ltd. Annual Conference Proceedings Auckland New Zealand 2017. 25: 63-68. Avian Pox in Shearwaters on Lord Howe Island Subir Sarker1, Shubhagata Das2, Jennifer L. Lavers3, Ian Hutton4, Karla Helbig1, Chris Upton5, Jacob Imbery5, and Shane R. Raidal2 1. Department of Physiology, Anatomy and Microbiology, School of Life Sciences, La Trobe University, Melbourne, VIC, 3086 2. School of Animal and Veterinary Sciences, Charles Sturt University, NSW 2678 3. Institute for Marine and Antarctic Studies, University of Tasmania, TAS 7004 4. Lord Howe Island Museum, Lord Howe Island, NSW 2898 5. Department of Biochemistry and Microbiology, University of Victoria, Victoria, BC, Canada. Abstract fungal infections are common and contribute to mortality (van Riper and Forrester, 2007). Until recently six avipox- Avipoxvirus infections occur in a wide range of bird spe- virus genomes were published; a pathogenic American cies worldwide. In Australia pox is common in the Aus- strain of Fowlpox virus (Afonso et al., 2000), an attenuat- tralian magpie (Cracticus tibicen), Currawongs (Strepera ed European strain of Fowlpox virus (Laidlaw and Skinner spp.) and Silvereyes (Zosterops lateralis) but very little , 2004), a virulent Canarypox virus (Tulman et al., 2004), a is known about the evolution of this family of viruses pathogenic South African strain of Pigeonpox virus, a Pen- or the disease ecology of avian poxviruses in seabirds. guinpox virus (Offerman et al., 2014) and a pathogenic Pox lesions have been seen in colonies of Shy Albatross Hungarian strain of Turkeypox virus (Banyai et al., 2015). (Thalassarche cauta) in Bass Strait but the epidemiology of pox in pelagic birds is not very well elucidated. -
Pathogenicity of Avipoxviruses in Chickens Isolated from Field Outbreaks Reported in Chhattisgarh
Journal of Animal Research: v.8 n.5, p. 789-795. October 2018 DOI: 10.30954/2277-940X.10.2018.8 Pathogenicity of Avipoxviruses in Chickens Isolated from Field Outbreaks Reported in Chhattisgarh Varsha Rani Gilhare*, S.D. Hirpurkar, C. Sannat and N. Rawat Department of Veterinary Microbiology, College of Veterinary Science and Animal Husbandry, Chhattisgarh Kamdhenu Vishwavidyalay, Anjora, Durg, Chhattisgarh, INDIA *Corresponding author: VR Gilhare; Email: [email protected] Received: 18 June, 2018 Revised: 02 Oct., 2018 Accepted: 08 Oct., 2018 ABSTRACT Virulence of field isolates ofAvipoxviruses was assayed by pathogenicity test performed in 5 weeks old unvaccinated chickens. Viruses as dry scab were collected from naturally pox infected chickens, turkeys and pigeon and propagated in CAM of embryonated chickens upto various passages. In two separate trials 1 and 2, the chickens were infected with 5th and 20th passage CAM suspension, respectively by feather follicle method. All chicken groups in both trials (except control group) developed primary lesions as ‘take’ reaction from 48 to 72 hr PI and there after further progressive development of primary lesion did not differ among field isolates. In trial 1, secondary stage began with recovery from primary lesions at feather follicle, spread of infection to comb and wattles with development of secondary pox lesions and finally recovery from disease was observed after 15 days in FPV and TPV infected chickens, but not in PPV infected chickens. In trial 2, secondary pox lesions were not observed in any of the chickens, indicating that 20 passage virus induced ‘take’ at site without further spread of infection. -
Sarker Subir Bmcgenomics 2017.Pdf
UVicSPACE: Research & Learning Repository _____________________________________________________________ Faculty of Science Faculty Publications _____________________________________________________________ Genomic characterization of two novel pathogenic avipoxviruses isolated from pacific shearwaters (Ardenna spp.) Subir Sarker, Shubhagata Das, Jennifer L. Lavers, Ian Hutton, Karla Helbig, Jacob Imbery, Chris Upton, and Shane R. Raidal 13 April 2017 © 2017 Sarker et al. This is an open access article distributed under the terms of the Creative Commons Attribution License. http://creativecommons.org/licenses/by/4.0 This article was originally published at: https://doi.org/10.1186/s12864-017-3680-z Citation for this paper: Sarker, S.; Das, S.; Lavers, J.L.; Hutton, I.; Helbig, K.; … & Raidal, S.R. (2017). Genomic characterization of two novel pathogenic avipoxviruses isolated from pacific shearwaters (Ardenna spp.). BMC Genomics, 18(298). https://doi.org/10.1186/s12864-017-3680-z Sarker et al. BMC Genomics (2017) 18:298 DOI 10.1186/s12864-017-3680-z RESEARCH ARTICLE Open Access Genomic characterization of two novel pathogenic avipoxviruses isolated from pacific shearwaters (Ardenna spp.) Subir Sarker1* , Shubhagata Das2, Jennifer L. Lavers3, Ian Hutton4, Karla Helbig1, Jacob Imbery5, Chris Upton5 and Shane R. Raidal2 Abstract Background: Over the past 20 years, many marine seabird populations have been gradually declining and the factors driving this ongoing deterioration are not always well understood. Avipoxvirus infections have been found in a wide range of bird species worldwide, however, very little is known about the disease ecology of avian poxviruses in seabirds. Here we present two novel avipoxviruses from pacific shearwaters (Ardenna spp), one from a Flesh-footed Shearwater (A. carneipes) (SWPV-1) and the other from a Wedge-tailed Shearwater (A. -
First Phylogenetic Analysis of Avipoxvirus (APV) in Brazil1
Pesq. Vet. Bras. 36(5):357-362, maio 2016 DOI: 10.1590/S0100-736X2016000500001 First phylogenetic analysis of Avipoxvirus (APV) in Brazil1 2 2 2 2 3 2 2 4 Hiran C. Kunert-Filho *, Samuel P. Cibulski , Fabrine2 Finkler , Tiela T. Grassotti , Fátima R.F. Jaenisch , Kelly C.T. de Brito , Daiane Carvalho , Maristela Lovato ABSTRACT.- and Benito G. de Brito First phylogenetic analysis of Avipoxvi- rus (APV) in Kunert-FilhoBrazil. Pesquisa H.C., Veterinária Cibulski S.P., Brasileira Finkler 36(5):357-362F., Grassotti T.T., Jaenisch F.R.F., Brito K.C.T., Carvalho D., Lovato M. & Brito B.G. 2016. Laboratório de Saúde E-mail:das Aves e Inovação Tecnológica, Instituto de Pesquisas Veterinárias Desidério Finamor, FEPAGRO Saúde Animal, Estrada do Conde 6000, Eldorado do Sul, RS 92990-000, Brazil. [email protected] This study represents the first phylogenetic analysis of avian poxvirus recovered from- turkeys in Brazil. The clinical disorders related to fowlpox herein described occurred in a turkey housing system. The birds displaying characteristic pox lesions which were ob served on the neck, eyelids and beak of the turkeys. Four affected turkeys were randomly chosen, euthanized and necropsied. Tissues samples were submitted for histopathologicalP4b analysis and total DNA was further extracted, amplified by conventional PCR, sequenced- and phylogenetically analyzed. Avian poxviruses specific PCR was performed basedP4b on core protein gene sequence. The histological analysis revealed dermal inflammatory pro- cess, granulation tissue, hyperplasia of epithelial cells and inclusion bodies. The ® gene was detected in all samples. Sequencing revealed a 100% nucleotide and amino acid se quence identity among the samples, andAvipoxvirus the sequences were deposited in GenBank . -
A Multiplex PCR for Detection of Poxvirus and Papillomavirus in Cutaneous Warts from Live Birds and Museum Skins
Submitted, accepted and published by AVIAN DISEASES 55:545–553, 2011 A Multiplex PCR for Detection of Poxvirus and Papillomavirus in Cutaneous Warts from Live Birds and Museum Skins a AG BG C D C E C J . Pe´rez-Tris, R. A. J. Williams, E. Abel-Ferna´ndez, J. Barreiro, J. J. Conesa, J. Figuerola, M. Martinez-Mart´ınez, A CF A. Ram´ırez, and L. Benitez ADepartmento de Zoolog´ıa y Antropolog´ıa F´ısica, Facultad de Biolog´ıa, Universidad Complutense de Madrid, C/ Jose Antonio Novais, 28040, Madrid, Spain BNatural History Museum and Biodiversity Research Center, University of Kansas, Lawrence, KS 66045 CDepartmento de Microbiolog´ıa III, Facultad de Biolog´ıa, Universidad Complutense de Madrid, C/ Jose Antonio Novais, 28040, Madrid, Spain DMuseo Nacional de Ciencias Naturales, C/Jose´ Gutie´rrez Abascal 2, 28006 Madrid, Spain EEstacion Biologica de Don˜ ana, Consejo Superior de Investigaciones Cient´ıficas, 41013 Seville, Spain SUMMARY. Viral cutaneous lesions are frequent in some bird populations, though we are generally ignorant of the causal agent. In some instances, they represent a threat to livestock and wildlife health. We present here a multiplex PCR which detects and distinguishes infection by two such agents, avipoxviruses and papillomaviruses, in avian hosts. We assayed biopsies and superficial skin swabs from field and preserved museum skin specimens. Ninety-three percent of samples from symptomatic specimens tested positive for the presence of avipox (n 5 23) or papillomavirus (n 5 5). Sixteen and five sequences, corresponding to the P4b and L1 genes, were obtained from avipox and papillomavirus, respectively. -
Pathology of Avipoxvirus Isolates in Chicken Embryonated Eggs
Int.J.Curr.Microbiol.App.Sci (2019) 8(9): 422-430 International Journal of Current Microbiology and Applied Sciences ISSN: 2319-7706 Volume 8 Number 09 (2019) Journal homepage: http://www.ijcmas.com Original Research Article https://doi.org/10.20546/ijcmas.2019.809.051 Pathology of Avipoxvirus Isolates in Chicken Embryonated Eggs Bhavesh Sharma1, Nawab Nashiruddullah1*, Jafrin Ara Ahmed2, Sankalp Sharma1 and D. Basheer Ahamad3 1Division of Veterinary Pathology, 2Division of Veterinary Physiology & Biochemistry, Faculty of Veterinary Sciences and Animal Husbandry, Sher-e- Kashmir University of Agricultural Science and Technology of Jammu, RS Pura-181102, India 3Department of Veterinary Pathology, Veterinary College and Research Institute, Tamil Nadu University of Veterinary and Animal Sciences, Tirunelveli, India *Corresponding author ABSTRACT K e yw or ds Fowlpox virus (FWPV) and Pigeonpox virus (PGPV) isolates from domesticated fowls and Avipoxvirus , pigeons from Jammu region were inoculated on chorioallantoic membrane (CAM) of Chicken chicken embryonated eggs (CEE) through three passage levels to observe their cytopathic embryonated eggs effects (CPE) and underlying pathology. Development of PGPV induced lesions was (CEE), earlier than FWPV, and more severe. PGPV progressed from small white opaque lesions Chorioallantoic from first passage; to CAM thickening, haemorrhages and very prominent and extensive membrane (CAM), pock lesions at second; and by third passage, focal areas of necrosis was evident. With Cytopathic effect FWPV, opaque thickening with haemorrhages at first passage; to tiny, discrete, white foci (CPE) , Fowlpoxvirus on second; and at third passage, small, round, raised circular white pock were distinctly visible. CAM histology revealed PGPV induced hyperplasia of the chorionic epithelium; (FWPV), Pigeonpoxvirus oedema, thrombosis, massive fibroblastic proliferation, necrosis and islands of vacuolated (PGPV) epithelial cells containing eosinophilic intra-cytoplasmic inclusions in the mesoderm. -
The-Dictionary-Of-Virology-4Th-Mahy
The Dictionary of VIROLOGY This page intentionally left blank The Dictionary of VIROLOGY Fourth Edition Brian W.J. Mahy Division of Emerging Infections and Surveillance Services Centers for Disease Control and Prevention Atlanta, GA 30333 USA AMSTERDAM • BOSTON • HEIDELBERG • LONDON • NEW YORK • OXFORD PARIS • SAN DIEGO • SAN FRANCISCO • SINGAPORE • SYDNEY • TOKYO Academic Press is an imprint of Elsevier Academic Press is an imprint of Elsevier 30 Corporate Drive, Suite 400, Burlington, MA 01803, USA 525 B Street, Suite 1900, San Diego, California 92101-4495, USA 32 Jamestown Road, London NW1 7BY, UK Copyright © 2009 Elsevier Ltd. All rights reserved No part of this publication may be reproduced, stored in a retrieval system or trans- mitted in any form or by any means electronic, mechanical, photocopying, recording or otherwise without the prior written permission of the publisher Permissions may be sought directly from Elsevier’s Science & Technology Rights Departmentin Oxford, UK: phone (ϩ44) (0) 1865 843830; fax (ϩ44) (0) 1865 853333; email: [email protected]. Alternatively visit the Science and Technology website at www.elsevierdirect.com/rights for further information Notice No responsibility is assumed by the publisher for any injury and/or damage to persons or property as a matter of products liability, negligence or otherwise, or from any use or operation of any methods, products, instructions or ideas contained in the material herein. Because of rapid advances in the medical sciences, in particular, independent verification of diagnoses and drug dosages should be made British Library Cataloguing in Publication Data A catalogue record for this book is available from the British Library Library of Congress Cataloguing in Publication Data A catalogue record for this book is available from the Library of Congress ISBN 978-0-12-373732-8 For information on all Academic Press publications visit our website at www.elsevierdirect.com Typeset by Charon Tec Ltd., A Macmillan Company. -
Fowlpox Virus 4B Gene
Techne ® qPCR test Fowlpox Virus 4b gene 150 tests For general laboratory and research use only Quantification of Fowlpox Virus genomes. 1 Advanced kit handbook HB10.03.07 Introduction to Fowlpox Virus Fowlpox is an avian disease caused by a double-stranded DNA virus of the genus Avipoxvirus which belongs to the Poxviridae family. The virus is generally brick-shaped measuring 330 x 280 x 220 nm with an outer coat of randomly arranged surface tubules covering an envelope which surrounds the viral core. There the linear genome of the virus, approximately 288 Kbp in length and encoding around 260 genes is located within a biconcave nucleoid. Outside the core, lateral bodies are found in the concaved recess on each side of the core. The primary method for dissemination of the virus is considered to be via mechanical transmission, although airborne transmission is also suspected in many cases. Infection can occur through injured or lacerated skin. Upon entering the cell the virus loses the outer membrane and subsequently after the second stage of the uncoating process, only the viral core moves through the cytoplasm. Once uncoated, the DNA undergoes transcription in two distinct stages temporally separated by viral genome replication. The replicated genome and translated proteins then assemble into a new viral particle in the host cytoplasm and exit the host cell using actin tails. Infection with Fowlpox virus causes dry skin lesions around the comb, eyes and wattles as well as diptheric lesions in the oral cavity and upper respiratory tract. Infection with this virus can lead to a potential drop in egg production, retarded growth in broilers and in some cases death. -
The Pathogenesis, Pathology and Immunology of Smallpox and Vaccinia
CHAPTER 3 THE PATHOGENESIS, PATHOLOGY AND IMMUNOLOGY OF SMALLPOX AND VACCINIA Contents Page Introduction 122 The portal of entry of variola virus 123 The respiratory tract 123 Inoculation smallpox 123 The conjunctiva 123 Congenital infection 123 The spread of infection through the body 124 Mousepox 124 Rabbitpox 126 Monkeypox 126 Variola virus infection in non-human primates 127 Smallpox in human subjects 127 The dissemination of virus through the body 129 The rash 129 Toxaemia 130 Pathological anatomy and histology of smallpox 131 General observations 131 The skin lesions 131 Lesions of the mucous membranes of the respiratory and digestive tracts 138 Effects on other organs 139 The histopathology of vaccinia and vaccinia1 complications 140 Normal vaccination 140 Postvaccinial encephalitis 142 Viral persistence and reactivation 143 Persistence of variola virus in human patients 144 Persistence of orthopoxviruses in animals 144 Epidemiological significance 146 The immune response in smallpox and after vaccination 146 Protection against reinfection 146 Humoral and cellular responses in orthopoxvirus infections 148 Methods for measuring antibodies to orthopoxviruses 149 The humoral response in relation to pathogenesis 152 121 122 SMALLPOX AND ITS ERADICATION Page The immune response in smallpox and after vaccination (cont.) Methods for measuring cell-mediated immunity 155 Cell-mediated immunity in relation to pathogenesis 156 The immune response in smallpox 157 The immune response after vaccination 158 Cells involved in immunological memory