Relationships and Biology of Ambrosia Beetles and Fungi and the Development of Pre-Invasion Assessment of Potential Pests
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Diversity, Abundance, and Distribution of Wood-Decay Fungi in Major Parks of Hong Kong
Article Diversity, Abundance, and Distribution of Wood-Decay Fungi in Major Parks of Hong Kong Shunping Ding 1,2,* , Hongli Hu 2,3 and Ji-Dong Gu 2,4,* 1 Wine and Viticulture, California Polytechnic State University, 1 Grand Ave., San Luis Obispo, CA 93407, USA 2 Laboratory of Environmental Microbiology and Toxicology, School of Biological Sciences, Faculty of Science, The University of Hong Kong, Pokfulam Road, Hong Kong 999077, China; [email protected] 3 Ministry of Agriculture Key Laboratory of Subtropical Agro-Biological Disaster and Management, Fujian Agriculture and Forestry University, Fuzhou 350002, China 4 Environmental Engineering, Guangdong Technion-Israel Institute of Technology, 241 Daxue Road, Shantou 515041, China * Correspondence: [email protected] (S.D.); [email protected] (J.-D.G.) Received: 15 August 2020; Accepted: 21 September 2020; Published: 24 September 2020 Abstract: Wood-decay fungi are one of the major threats to the old and valuable trees in Hong Kong and constitute a main conservation and management challenge because they inhabit dead wood as well as living trees. The diversity, abundance, and distribution of wood-decay fungi associated with standing trees and stumps in four different parks of Hong Kong, including Hong Kong Park, Hong Kong Zoological and Botanical Garden, Kowloon Park, and Hong Kong Observatory Grounds, were investigated. Around 4430 trees were examined, and 52 fungal samples were obtained from 44 trees. Twenty-eight species were identified from the samples and grouped into twelve families and eight orders. Phellinus noxius, Ganoderma gibbosum, and Auricularia polytricha were the most abundant species and occurred in three of the four parks. -
Why Mushrooms Have Evolved to Be So Promiscuous: Insights from Evolutionary and Ecological Patterns
fungal biology reviews 29 (2015) 167e178 journal homepage: www.elsevier.com/locate/fbr Review Why mushrooms have evolved to be so promiscuous: Insights from evolutionary and ecological patterns Timothy Y. JAMES* Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48109, USA article info abstract Article history: Agaricomycetes, the mushrooms, are considered to have a promiscuous mating system, Received 27 May 2015 because most populations have a large number of mating types. This diversity of mating Received in revised form types ensures a high outcrossing efficiency, the probability of encountering a compatible 17 October 2015 mate when mating at random, because nearly every homokaryotic genotype is compatible Accepted 23 October 2015 with every other. Here I summarize the data from mating type surveys and genetic analysis of mating type loci and ask what evolutionary and ecological factors have promoted pro- Keywords: miscuity. Outcrossing efficiency is equally high in both bipolar and tetrapolar species Genomic conflict with a median value of 0.967 in Agaricomycetes. The sessile nature of the homokaryotic Homeodomain mycelium coupled with frequent long distance dispersal could account for selection favor- Outbreeding potential ing a high outcrossing efficiency as opportunities for choosing mates may be minimal. Pheromone receptor Consistent with a role of mating type in mediating cytoplasmic-nuclear genomic conflict, Agaricomycetes have evolved away from a haploid yeast phase towards hyphal fusions that display reciprocal nuclear migration after mating rather than cytoplasmic fusion. Importantly, the evolution of this mating behavior is precisely timed with the onset of diversification of mating type alleles at the pheromone/receptor mating type loci that are known to control reciprocal nuclear migration during mating. -
(63) Continuation Inspart of Application No. PCT RE"SE SEN"I", "ES"E"NE
US 2010.0086647A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2010/0086647 A1 Kristiansen (43) Pub. Date: Apr. 8, 2010 (54) FEED OR FOOD PRODUCTS COMPRISING filed on Jan. 25, 2006, provisional application No. FUNGALMATERAL 60/690,496, filed on Jun. 15, 2005. (75) Inventor: Bjorn Kristiansen, Frederikstad (30) Foreign Application Priority Data (NO) May 13, 2005 (DK) ........................... PA 2005 00710 Correspondence Address: Jun. 15, 2005 (DK). ... PA 2005 OO88O BROWDY AND NEIMARK, P.L.L.C. Jul. 15, 2005 (DK) ....................... PCTFDKO5/OO498 624 NINTH STREET, NW Jan. 25, 2006 (DK)........................... PA 2006 OO117 SUTE 300 WASHINGTON, DC 20001-5303 (US) Publication Classification 51) Int. Cl. (73)73) AssigneeA : MEDMUSHAS(DK) s HORSHOLM ( A2.3L I/28 (2006.01) A23K L/18 (2006.01) (21) Appl. No.: 11/914,318 A23K L/6 (2006.01) CI2P 19/04 (2006.01) (22) PCT Filed: May 11, 2006 AOIK 6L/00 (2006.01) (86). PCT NO. PCT/DKO6/OO2S3 (52) U.S. Cl. ................................ 426/62: 426/2: 119/230 S371 (c)(1) (57) ABSTRACT (2), (4) Date: Dec. 1, 2009 The present invention relates to feed and food compositions comprising material obtained by fermenting fungi of the Related U.S. Application Data Basidiomycetes family in a liquid medium. Interestingly, (63) DK2005/000498,continuation inspart filed onof Jul.application 15, 2005. No. PCT enhanceRE"SE Survival SEN"I",and/or support "ES"E"NE growth of normal, healthy (60) Provisional application No. 60/690,496, filed on Jun. animals. Furthermore, the compounds may modulate the 15, 2005, provisional application No. -
Distribution of Methionine Sulfoxide Reductases in Fungi and Conservation of the Free- 2 Methionine-R-Sulfoxide Reductase in Multicellular Eukaryotes
bioRxiv preprint doi: https://doi.org/10.1101/2021.02.26.433065; this version posted February 27, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Distribution of methionine sulfoxide reductases in fungi and conservation of the free- 2 methionine-R-sulfoxide reductase in multicellular eukaryotes 3 4 Hayat Hage1, Marie-Noëlle Rosso1, Lionel Tarrago1,* 5 6 From: 1Biodiversité et Biotechnologie Fongiques, UMR1163, INRAE, Aix Marseille Université, 7 Marseille, France. 8 *Correspondence: Lionel Tarrago ([email protected]) 9 10 Running title: Methionine sulfoxide reductases in fungi 11 12 Keywords: fungi, genome, horizontal gene transfer, methionine sulfoxide, methionine sulfoxide 13 reductase, protein oxidation, thiol oxidoreductase. 14 15 Highlights: 16 • Free and protein-bound methionine can be oxidized into methionine sulfoxide (MetO). 17 • Methionine sulfoxide reductases (Msr) reduce MetO in most organisms. 18 • Sequence characterization and phylogenomics revealed strong conservation of Msr in fungi. 19 • fRMsr is widely conserved in unicellular and multicellular fungi. 20 • Some msr genes were acquired from bacteria via horizontal gene transfers. 21 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.02.26.433065; this version posted February 27, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. -
(2014), Volume 2, Issue 11, 238-245
ISSN 2320-5407 International Journal of Advanced Research (2014), Volume 2, Issue 11, 238-245 Journal homepage: http://www.journalijar.com INTERNATIONAL JOURNAL OF ADVANCED RESEARCH RESEARCH ARTICLE Diversity of family Meruliaceae from Jammu Division (J&K), India Jyoti*, Avneet Pal Singh & Gurpaul Singh Dhingra Department of Botany, Punjabi University, Patiala, 147002 India Manuscript Info Abstract Manuscript History: An account of eight resupinate, non-poroid taxa (Crustoderma corneum, Gyrophanopsis polonensis, Hyphoderma argillaceum, H. hjortstamii, H. Received: 25 September 2014 Final Accepted: 19 October 2014 setigerum, H. setigerum var. bicystidium, Hypochnicium wakefieldiae, Published Online: November 2014 Radulodon indicus) of family Meruliaceae (Class- Agaricomycetes, Phylum- Basidiomycota) has been given. All these are new reports for the Key words: Jammu Division in the state of Jammu and Kashmir (J&K). Of these, Basidiomycota, Agaricomycetes, Hyphoderma hjortstamii is a new record for India, Hypochnicium Meruliaceae. wakefieldiae new for the North Western Himalaya, Crustoderma corneum, Gyrophanopsis polonensis and H. setigerum var. bicystidium new for J&K. *Corresponding Author Jyoti Sharma Copy Right, IJAR, 2014,. All rights reserved Introduction While conducting fungal forays in the different localities of Jammu division in the state of Jammu and Kashmir (India), twelve collections of resupinate, non-poroid Agaricomycetous fungi were made. On the basis of comparison of macroscopic and microscopic features in the published literature (Thind & Rattan 1970, Eriksson & Ryvarden 1975, Rattan 1977, Eriksson & Ryvarden 1976, Eriksson et al. 1981, Wu SH. 1990, Stalpers 1998, Nakasone 2001, Bernicchia & Gorjón 2010), these have been identified as Crustoderma corneum, Gyrophanopsis polonensis, Hyphoderma argillaceum, H. hjortstamii, H. setigerum, H. setigerum var. bicystidium, Hypochnicium wakefieldiae and Radulodon indicus. -
Phylogenetic Classification of Trametes
TAXON 60 (6) • December 2011: 1567–1583 Justo & Hibbett • Phylogenetic classification of Trametes SYSTEMATICS AND PHYLOGENY Phylogenetic classification of Trametes (Basidiomycota, Polyporales) based on a five-marker dataset Alfredo Justo & David S. Hibbett Clark University, Biology Department, 950 Main St., Worcester, Massachusetts 01610, U.S.A. Author for correspondence: Alfredo Justo, [email protected] Abstract: The phylogeny of Trametes and related genera was studied using molecular data from ribosomal markers (nLSU, ITS) and protein-coding genes (RPB1, RPB2, TEF1-alpha) and consequences for the taxonomy and nomenclature of this group were considered. Separate datasets with rDNA data only, single datasets for each of the protein-coding genes, and a combined five-marker dataset were analyzed. Molecular analyses recover a strongly supported trametoid clade that includes most of Trametes species (including the type T. suaveolens, the T. versicolor group, and mainly tropical species such as T. maxima and T. cubensis) together with species of Lenzites and Pycnoporus and Coriolopsis polyzona. Our data confirm the positions of Trametes cervina (= Trametopsis cervina) in the phlebioid clade and of Trametes trogii (= Coriolopsis trogii) outside the trametoid clade, closely related to Coriolopsis gallica. The genus Coriolopsis, as currently defined, is polyphyletic, with the type species as part of the trametoid clade and at least two additional lineages occurring in the core polyporoid clade. In view of these results the use of a single generic name (Trametes) for the trametoid clade is considered to be the best taxonomic and nomenclatural option as the morphological concept of Trametes would remain almost unchanged, few new nomenclatural combinations would be necessary, and the classification of additional species (i.e., not yet described and/or sampled for mo- lecular data) in Trametes based on morphological characters alone will still be possible. -
Three Species of Wood-Decaying Fungi in <I>Polyporales</I> New to China
MYCOTAXON ISSN (print) 0093-4666 (online) 2154-8889 Mycotaxon, Ltd. ©2017 January–March 2017—Volume 132, pp. 29–42 http://dx.doi.org/10.5248/132.29 Three species of wood-decaying fungi in Polyporales new to China Chang-lin Zhaoa, Shi-liang Liua, Guang-juan Ren, Xiao-hong Ji & Shuanghui He* Institute of Microbiology, Beijing Forestry University, No. 35 Qinghuadong Road, Haidian District, Beijing 100083, P.R. China * Correspondence to: [email protected] Abstract—Three wood-decaying fungi, Ceriporiopsis lagerheimii, Sebipora aquosa, and Tyromyces xuchilensis, are newly recorded in China. The identifications were based on morphological and molecular evidence. The phylogenetic tree inferred from ITS+nLSU sequences of 49 species of Polyporales nests C. lagerheimii within the phlebioid clade, S. aquosa within the gelatoporia clade, and T. xuchilensis within the residual polyporoid clade. The three species are described and illustrated based on Chinese material. Key words—Basidiomycota, polypore, taxonomy, white rot fungus Introduction Wood-decaying fungi play a key role in recycling nutrients of forest ecosystems by decomposing cellulose, hemicellulose, and lignin of the plant cell walls (Floudas et al. 2015). Polyporales, a large order in Basidiomycota, includes many important genera of wood-decaying fungi. Recent molecular studies employing multi-gene datasets have helped to provide a phylogenetic overview of Polyporales, in which thirty-four valid families are now recognized (Binder et al. 2013). The diversity of wood-decaying fungi is very high in China because of the large landscape ranging from boreal to tropical zones. More than 1200 species of wood-decaying fungi have been found in China (Dai 2011, 2012), and some a Chang-lin Zhao and Shi-liang Liu contributed equally to this work and share first-author status 30 .. -
(12) Patent Application Publication (10) Pub. No.: US 2009/0005340 A1 Kristiansen (43) Pub
US 20090005340A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2009/0005340 A1 Kristiansen (43) Pub. Date: Jan. 1, 2009 54) BOACTIVE AGENTS PRODUCED BY 3O Foreigngn AppApplication PrioritVty Data SUBMERGED CULTIVATION OFA BASDOMYCETE CELL Jun. 15, 2005 (DK) ........................... PA 2005 OO881 Jan. 25, 2006 (DK)........................... PA 2006 OO115 (75) Inventor: Bjorn Kristiansen, Frederikstad Publication Classification (NO)NO (51) Int. Cl. Correspondence Address: A 6LX 3L/75 (2006.01) BROWDY AND NEIMARK, P.L.L.C. CI2P I/02 (2006.01) 624 NINTH STREET, NW A6IP37/00 (2006.01) SUTE 300 CI2P 19/04 (2006.01) WASHINGTON, DC 20001-5303 (US) (52) U.S. Cl. ............................ 514/54:435/171; 435/101 (57) ABSTRACT (73) Assignee: MediMush A/S, Horsholm (DK) - The invention in one aspect is directed to a method for culti (21) Appl. No.: 11/917,516 Vating a Basidiomycete cell in liquid culture medium, said method comprising the steps of providing a Basidiomycete (22) PCT Filed: Jun. 14, 2006 cell capable of being cultivated in a liquid growth medium, e - rs and cultivating the Basidiomycete cell under conditions (86). PCT No.: PCT/DK2OO6/OOO340 resulting in the production intracellularly or extracellularly of one or more bioactive agent(s) selected from the group con S371 (c)(1) sisting of oligosaccharides, polysaccharides, optionally gly (2), (4) Date: Ul. 31, 2008 cosylated peptides or polypeptides, oligonucleotides, poly s e a v-9 nucleotides, lipids, fatty acids, fatty acid esters, secondary O O metabolites Such as polyketides, terpenes, steroids, shikimic Related U.S. Application Data acids, alkaloids and benzodiazepine, wherein said bioactive (60) Provisional application No. -
Molecular Phylogeny and Taxonomic Position of Trametes Cervina and Description of a New Genus Trametopsis
CZECH MYCOL. 60(1): 1–11, 2008 Molecular phylogeny and taxonomic position of Trametes cervina and description of a new genus Trametopsis MICHAL TOMŠOVSKÝ Faculty of Forestry and Wood Technology, Mendel University of Agriculture and Forestry in Brno, Zemědělská 3, CZ-613 00, Brno, Czech Republic [email protected] Tomšovský M. (2008): Molecular phylogeny and taxonomic position of Trametes cervina and description of a new genus Trametopsis. – Czech Mycol. 60(1): 1–11. Trametes cervina (Schwein.) Bres. differs from other species of the genus by remarkable morpho- logical characters (shape of pores, hyphal system). Moreover, an earlier published comparison of the DNA sequences within the genus revealed considerable differences between this species and the re- maining European members of the genus Trametes. These results were now confirmed using se- quences of nuclear LSU and mitochondrial SSU regions of ribosomal DNA. The most related species of Trametes cervina are Ceriporiopsis aneirina and C. resinascens. According to these facts, the new genus Trametopsis Tomšovský is described and the new combination Trametopsis cervina (Schwein.) Tomšovský is proposed. Key words: Trametopsis, Trametes, ribosomal DNA, polypore, taxonomy. Tomšovský M. (2008): Molekulární fylogenetika a taxonomické zařazení outkovky jelení, Trametes cervina, a popis nového rodu Trametopsis. – Czech Mycol. 60(1): 1–11. Outkovka jelení, Trametes cervina (Schwein.) Bres., se liší od ostatních zástupců rodu nápadnými morfologickými znaky (tvar rourek, hyfový systém). Také dříve uveřejněné srovnání sekvencí DNA v rámci rodu Trametes odhalilo významné rozdíly mezi tímto druhem a ostatními evropskými zástupci rodu. Uvedené výsledky byly nyní potvrzeny za použití sekvencí jaderné LSU a mitochondriální SSU oblasti ribozomální DNA, přičemž nejpříbuznějšími druhu Trametes cervina jsou Ceriporiopsis anei- rina a C. -
On the Relationships of Paecilomyces Sect. Isarioidea Species1
Mycol. Res. 109 (5): 581–589 (May 2005). f The British Mycological Society 581 doi:10.1017/S0953756205002741 Printed in the United Kingdom. On the relationships of Paecilomyces sect. Isarioidea species1 J. Jennifer LUANGSA-ARD1,2, Nigel L. HYWEL-JONES1, Leka MANOCH2 and Robert A. SAMSON2,3* 1 BIOTEC, NSTDA Science Park, 113 Paholyothin Road, Khlong 1, Khlong Luang, Pathum Thani, Thailand. 2 Department of Plant Pathology, Faculty of Agriculture, Kasetsart University, Bangkok 10900, Thailand. 3 Centraalbureau voor Schimmelcultures, P.O. Box 85167, 3508 AD Utrecht, The Netherlands. E-mail : [email protected] Received 21 May 2004; accepted 14 February 2005. Phylogenetic relationships of Paecilomyces sect. Isarioidea species were analysed using the b-tubulin gene and ITS rDNA. Maximum parsimony analyses showed that the section does not form a natural taxonomic group and is polyphyletic within the Hypocreales. However, a group was recognized, designated as the Isaria clade, to be monophyletic comprising of the following Paecilomyces species: P. amoeneroseus, P. cateniannulatus, P. cateniobliquus, P. cicadae, P. coleopterorus, P. farinosus, P. fumosoroseus, P. ghanensis, P. javanicus and P. tenuipes. Some of these species have teleomorphs in Cordyceps. INTRODUCTION species from our current work and focus on species accepted to be within the Hypocreales. The work pres- The genus Paecilomyces as conceived by Bainier (1907) ented here aimed to determine if an entomogenous is only monophyletic within the order Eurotiales when habit for sect. Isarioidea is a monophyletic character- characterised by a Byssochlamys teleomorph using an istic within the Hypocreales. With a view to considering 18S phylogeny (Luangsa-ard, Hywel-Jones & Samson whether the genus name Isaria should be resurrected 2004). -
Improved Efficiency in Screening.Pdf
PLEASE NOTE! THIS IS SELF-ARCHIVED FINAL-DRAFT VERSION OF THE ORIGINAL ARTICLE To cite this Article: Kinnunen, A. Maijala, P., Järvinen, P. & Hatakka, A. 2017. Improved efficiency in screening for lignin-modifying peroxidases and laccases of basidiomycetes. Current Biotechnology 6 (2), 105–115. doi: 10.2174/2211550105666160330205138 URL:http://www.eurekaselect.com/140791/article Send Orders for Reprints to [email protected] Current Biotechnology, 2016, 5, 000-000 1 RESEARCH ARTICLE Improved Efficiency in Screening for Lignin-Modifying Peroxidases and Laccases of Basidiomycetes Anu Kinnunen1, Pekka Maijala2, Päivi Järvinen3 and Annele Hatakka1,* aDepartment of Food and Environmental Sciences, Faculty of Agriculture and Forestry, University of Helsinki, Finland; bSchool of Food and Agriculture, Applied University of Seinäjoki, Seinäjoki, Finland; cCentre for Drug Research, Division of Pharmaceutical Biosciences, Faculty of Pharmacy, University of Helsinki, Finland Abstract: Background: Wood rotting white-rot and litter-decomposing basidiomycetes form a huge reservoir of oxidative enzymes, needed for applications in the pulp and paper and textile industries and for bioremediation. Objective: The aim was (i) to achieve higher throughput in enzyme screening through miniaturization and automatization of the activity assays, and (ii) to discover fungi which produce efficient oxidoreductases for industrial purposes. Methods: Miniaturized activity assays mostly using dyes as substrate were carried Annele Hatakka A R T I C L E H I S T O R Y out for lignin peroxidase, versatile peroxidase, manganese peroxidase and laccase. Received: November 24, 2015 Methods were validated and 53 species of basidiomycetes were screened for lignin modifying enzymes Revised: March 15, 2016 Accepted: March 29, 2016 when cultivated in liquid mineral, soy, peptone and solid state oat husk medium. -
Effects of Sugars and Salt on the Production of Glycosphingolipids in Mariannaea Elegans
Trace Nutrients Research 31 : 37−44(2014) Original Article Effects of Sugars and Salt on the Production of Glycosphingolipids in Mariannaea Elegans 1, 2) 1) 1, 2) 1, †) Yasushi Tani , Yasunori Yamashita , Shigeki Saito and Hisaaki Mihara 1)Department of Biotechnology, College of Life Sciences, Ritsumeikan University * , 2)Ritsumeikan Global Innovation Research Organization, Ritsumeikan University * Summary Glycosphingolipids (GSLs) are complex macromolecules in cell membranes that play important roles in various bio- logical processes. Fungi contain several types of GSLs that are distinct from those of mammals, but little is known about their physiological functions, metabolic regulation, or biosynthetic pathways. Most fungal species that possess fungal neogala-series GSLs (FNG-GSLs) are resistant to aureobasidin A (AbA), an antifungal agent that inhibits glyco- sylinositolphosphoceramide (GIPC) synthesis. We have previously reported that Mariannaea elegans has FNG-GSLs in its cell membrane, despite the fact that it is sensitive to AbA. In this study, we demonstrated that M. elegans contains GIPCs, which explains its sensitivity to AbA. We also found that both cell growth and GSL composition of M. elegans were affected by the presence or absence of different sugars in the culture medium. In contrast, sugars had no effect on the phenotypes and GSLs of AbA-resistant Rhizopus sp. lacking GIPCs. Further analysis revealed that FNG-GSL production can be modulated by the addition of 600 mM NaCl in a glucose-containing medium. Fi- nally, sodium dodecyl sulfate-polyacrylamide gel electrophoresis analysis of Golgi proteins from M. elegans showed that at least nine proteins were present exclusively in cells producing FNG-GSL, suggesting that those proteins are potential candidates for FNG-GSL synthesis.