Medical Biology Protozoa
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The Morphology, Ultrastructure and Molecular Phylogeny of a New Freshwater Heterolobose Amoeba Parafumarolamoeba Stagnalis N. Sp
diversity Article The Morphology, Ultrastructure and Molecular Phylogeny of a New Freshwater Heterolobose Amoeba Parafumarolamoeba stagnalis n. sp. (Vahlkampfiidae; Heterolobosea) Anastasia S. Borodina 1,2, Alexander P. Mylnikov 1,†, Jan Janouškovec 3 , Patrick J. Keeling 4 and Denis V. Tikhonenkov 1,5,* 1 Papanin Institute for Biology of Inland Waters, Russian Academy of Sciences, 152742 Borok, Russia; [email protected] 2 Department of Zoology and Parasitology, Voronezh State University, Universitetskaya Ploshad 1, 394036 Voronezh, Russia 3 Centre Algatech, Laboratory of Photosynthesis, Institute of Microbiology, Czech Academy of Sciences, Opatovický Mlýn, 37981 Tˇreboˇn,Czech Republic; [email protected] 4 Department of Botany, University of British Columbia, 6270 University Boulevard, Vancouver, BC V6T1Z4, Canada; [email protected] 5 AquaBioSafe Laboratory, University of Tyumen, 625003 Tyumen, Russia * Correspondence: [email protected]; Tel.: +7-485-472-4533 † Alexander P. Mylnikov is deceased. http://zoobank.org/References/e543a49a-16c1-4b7c-afdb-0bc56b632ef0 Abstract: Heterolobose amoebae are important members of marine, freshwater, and soil microbial Citation: Borodina, A.S.; Mylnikov, communities, but their diversity remains under-explored. We studied the diversity of Vahlkampfiidae A.P.; Janouškovec, J.; Keeling, P.J.; to improve our understanding of heterolobosean relationships and their representation in aquatic Tikhonenkov, D.V. The Morphology, benthos. Using light and electron microscopy, and molecular phylogenies based on the SSU rRNA Ultrastructure and Molecular and ITS loci, we describe the fine morphology and evolutionary relationships of a new heterolobosean Phylogeny of a New Freshwater Parafumarolamoeba stagnalis n. sp. from a small pond in European Russia. Cells of P. stagnalis possess Heterolobose Amoeba a clearly distinguishable anterior hyaline pseudopodium, eruptive movement, several thin and Parafumarolamoeba stagnalis n. -
Some Considerations of Protoplasm
THE OHIO JOURNAL OF SCIENCE VOL. XXV MAY, 1925 No. 3 SOME CONSIDERATIONS OF PROTOPLASM. BRUCE FINK, Department of Botany, Miami University. One of the most fundamental problems in biological science is that which concerns protoplasm. Yet there is great diver- sity of opinion among biologists regarding what constitutes protoplasm and some doubt whether the term protoplasm is really worth retaining. In the present state of knowledge, protoplasm can not be defined in any terms of physical structure which will be accepted, without qualification, by a majority of botanists, and can only be defined somewhat more satis- factorily in terms of colloidal chemistry. Again, though chemi- cal definition is somewhat more certain than physical, this alone is far from satisfactory to those who think of cell con- tents in terms of microscopic structure. It is sometimes stated by certain biologists that proto- plasm is essentially alike in all organism. This may be true in the rough if we define in purely chemical terms; or if we content ourselves with the statement that protoplasm is the living substance of the cell, knowing not how much of the cell is alive, and, therefore, protoplasm. Turning to those very lowly organized plants, the bacteria, most of us will agree that the whole cell content, inclusive or exclusive of the vacuoles, composes the protoplasm. For higher fungi and for animals the situation is about the same, except that definite nuclei here replace the nuclear granules commonly supposed to exist in bacteria. Turning attention to higher green plants, we find that the cells are much more complex with respect to visible contents. -
The Cell-Theory: a Restatement, History, and Critique Part III
*57 The Cell-theory: A Restatement, History, and Critique Part III. The Cell as a Morphological Unit By JOHN R. BAKER (From the Department of Zoology and Comparative Anatomy, Oxford) SUMMARY A long time elapsed after the discovery of cells before they came to be generally regarded as morphological units. As a first step it was necessary to show that the cell-walls of plants were double and that cells could therefore be separated. The earliest advances in this direction were made by Treviranus (1805) and Link (1807). The idea of a cell was very imperfect, however, so long as attention was con- centrated on its wall. The first person who stated clearly that the cell-wall is not a necessary constituent was Leydig (1857). Subsequently the cell came to be regarded as a naked mass of protoplasm with a nucleus, and to this unit the name of protoplast was given. The true nature of the limiting membrane of the protoplast was discovered by Overton (1895). The plasmodesmata or connective strands that sometimes connect cells were prob- ably first seen by Hartig, in sieve-plates (1837). They are best regarded from the point of view of their functions in particular cases. They do not provide evidence for the view that the whole of a multicellular organism is basically a protoplasmic unit. Two or more nuclei in a continuous mass of protoplasm appear to have been seen for the first time in 1802, by Bauer. That an organism may consist wholly of a syn- cytium was discovered in i860, in the Mycetozoa. -
Can Protozoa Prove the Beginning of the World?
Southeastern University FireScholars Classical Conversations Spring 2020 Can Protozoa Prove the Beginning of the World? Karina L. Burton Southeastern University - Lakeland, [email protected] Follow this and additional works at: https://firescholars.seu.edu/ccplus Part of the Cell Biology Commons, and the Evolution Commons Recommended Citation Burton, Karina L., "Can Protozoa Prove the Beginning of the World?" (2020). Classical Conversations. 9. https://firescholars.seu.edu/ccplus/9 This Term Paper is brought to you for free and open access by FireScholars. It has been accepted for inclusion in Classical Conversations by an authorized administrator of FireScholars. For more information, please contact [email protected]. 1 Can Protozoa Prove the Beginning of the World? Karina L. Burton Classical Conversations: Challenge 4; Southeastern University ENGL 1233: English Composition II Grace Veach April 16, 2020 2 Abstract Protozoa are magnificent creatures. They exhibit all of the functions intrinsic to living organisms: irritability, metabolism, growth and reproduction. Within these functions, there are numerous examples of mutations that occur in order for organisms to adapt to their given environments. Irritability is demonstrated in protozoa by their use of pseudopodia, flagella, or cilia for motility; it has been shown that such locomotors exhibit diversity while maintaining similar protein and chemical structures that appear to be a result of evolutionary processes. Metabolism in protozoa is similar to that of larger animals, but their diet is unique. They primarily feast upon bacteria, which have begun mutating to evade easy ingestion and digestion by protozoa, therefore increasing their survival rate and making it necessary for protozoa to adapt. -
Intelligent Behaviors of Amoeboid Movement Based on Complex Dynamics of Soft Matter
REVIEW www.rsc.org/softmatter | Soft Matter Intelligent behaviors of amoeboid movement based on complex dynamics of soft matter Toshiyuki Nakagakiab and Robert D. Guyc Received 25th April 2007, Accepted 26th September 2007 First published as an Advance Article on the web 2nd November 2007 DOI: 10.1039/b706317m We review how soft matter is self-organized to perform information processing at the cell level by examining the model organism Physarum plasmodium. The amoeboid organism, Physarum polycephalum, in the class of true slime molds, exhibits the intelligent behavior of foraging in complex situations. When placed in a maze with food sources at two exits, the organism develops tubular structures with its body which connect the food sources along the shortest path so that the rates of nutrient absorption and intracellular communication are maximized. This intelligent behavior results from the organism’s control of a dynamic network through which mechanical and chemical information is transmitted. We review experimental studies that explore the development and adaptation of structures that make up the network. Recently a model of the dynamic network has been developed, and we review the formulation of this model and present some key results. The model captures the dynamics of existing networks, but it does not answer the question of how such networks form initially. To address the development of cell shape, we review existing mechanochemical models of the protoplasm of Physarum, present more general models of motile cells, and discuss how to adapt existing models to explore the development of intelligent networks in Physarum. 1. Introduction: intelligence at the cell level From a material science point of view, the cell is an exotic system in which nonliving materials act together to The cell is the elementary unit of all organisms. -
Bathybius Haeckelii and the Psychology of Scientific Discovery
NICOLAAS A. RUPKE BATHYBIUS HAECKELII AND THE PSYCHOLOGY OF SCIENTIFIC DISCOVERY THEORY INSTEAD OF OBSERVED DATA CONTROLLED THE LATE 19th CENTURY ‘DISCOVERY’ OF A PRIMITIVE FORM OF LIFE THE TRADITIONAL image of the scientist as an objective fact finder has become seriously tarnished by recent work in the history and philosophy of science. ’ It is argued that the growth of science is not always brought about by a reasoned debate based on objective evidence. Instead, scientific discovery seems to be controlled quite as much by certain psychological factors such as respect for a theoretical superstructure. The debate around T. S. Kuhn’s The Structure of Scientific Revolutions has brought similar iconoclastic aspects of scientific conduct to the attention of a cross section of the scholarly community.’ Without wanting to enter into the controversy generated by Kuhn’s book,3 this paper records one of the better examples from the annals of science to show how respect for a theoretical superstructure brought about a fictitious discovery. Specifically, it records how confidence in the heuristic value of evolutionary theory in the second half of the 19th century produced the discovery of a fictitious primitive form of life, called Bathybius, its sub-division into two genera, its reported occur- rence over vast regions of the ocean floor, its identification in the geologic record, and its wide acceptance in the life and earth sciences for the period of almost a decade. Background to the ‘Discovery’ Shortly after the publication of Darwin’s The Ongin of Species (1859), 1 See review paper by S. G. -
Whence Protoplasm?
The Virginia Teacher VOLUME XII JANUARY, 1931 NUMBER 1 WHENCE PROTOPLASM? ture, we will consider for a little the pos- sible ways in which these particular ele- IN THE Virginia Teacher for No- ments may have come to be associated to- vember, 1929, the author sketched in gether as living systems. bold outlines the progress of animal The greatest contribution of science has life on the earth. The present article deals been to establish that all phenomena of with the nature and origin of protoplasm. nature proceed in an orderly fashion, fol- It is impossible to give the sources for much lowing certain fixed laws. The behavior of of what follows. They have been too long protoplasm is no exception to this prin- part and parcel of a teaching equipment. ciple. We are accustomed to thinking of However, it may be said that the treatment the universe as being comprised of two of the subject as found in Osborn's Origin things, matter and energy. The work of and Evolution of Life has furnished a par- the last decade or so on the nature and ticular inspiration for much of what fol- structure of the atom seems to indicate that lows. after all there is but one thing in nature, Ever since Purkinje first used the term and that this thing is energy. Matter, "protoplasm," as a name for living sub- viewed in this light, is but an expression of stance, its nature has been a subject of ab- various energy relationships. However this sorbing interest. It is not strange that its may be, we usually think of energy as being unique properties fostered the idea that it of two kinds, potential or stored energy, must have had a supernatural origin, that and kinetic or active energy. -
Amoeba, Paramoecium, Euglena and Diatom
BIOLOGY CLASSIFICATION OF PLANTS Kingdom Protista Introduction to Kingdom Protista Kingdom Protista consists of unicellular organisms. They contain a well-defined nucleus and a nucleolus enclosed in a nuclear membrane. The protoplasm is surrounded by the plasma membrane. The cytoplasm contains various cell organelles. Nuclear material is organised in the form of a linear, double-stranded and helical DNA, along with proteins. The mode of nutrition is either autotrophic or heterotrophic. Examples: Amoeba, Paramoecium, Euglena and diatom Amoeba Paramoecium Euglena Diatom Amoeba Amoeba is microscopic and one of the simplest organisms made of just one cell. It is found in ponds, ditches, mud or on submerged water plants in freshwater bodies. The body of Amoeba is irregular in shape. The outer membrane called cell membrane or plasmalemma encloses the cytoplasm. A prominent nucleus, several food vacuoles, a contractile vacuole and reserve food granules are present. Amoeba uses pseudopodia for feeding and locomotion. It reproduces by binary fission. During unfavourable conditions (e.g. drying up of pond), it forms a protective cyst within which it reproduces by multiple fission, producing several offspring. Structure of Amoeba www.topperlearning.com 2 BIOLOGY CLASSIFICATION OF PLANTS Movement in Amoeba Movement in Amoeba occurs with the help of temporary or false feet called pseudopodia. Pseudopodia are finger-like projections formed by the flowing of cytoplasm into these extensions. At a time, several pseudopodia can be seen projecting out from the body of an Amoeba. However, only one of them extends longer than the others towards the direction it wants to move. This type of movement is called amoeboid movement. -
Protozoa : Locomotion and Nutrition
Protozoa : locomotion and Nutrition Lecturer : P. V. Deokar Department of Zoology R.K.M.M. Ahmednagar Locomotion in Protozoa • The following points highlight the three main types of locomotion exhibited by protozoans. The types of locomotion are: • 1. Amoeboid Movement • 2. Flagellar Movement • 3. Ciliary Movement. Protozoans: Type of Locomotion # 1. Amoeboid Movement: • movement of the animal is made by the throwing of pseudopodium, called amoeboid movement • In the direction of movement of Amoeba a new pseudopodium is formed and the pseudopodium at the opposite side gradually disappears. • Types of pseudopodia: • According to form, structure and activity four different kinds of pseudopodia are recognised • These are: • (a) Lobopodium • (b) Filopodium • (c) Reticulopodium or Rhizopodium • (d) Axopodium or Actinopodium (a) Lobopodium [Gk. lobes = lobe; podium = foot]: • It is a short, finger or tongue-like projection which is accompanied by a flow of endoplasm and ectoplasm. • The pseudopodium is broad with rounded or blunt tips. • The ectoplasmmic area is distinctly clear, called the hyaline cap. • It is the characteristic of many amoebas such as Amoeba. (b) Filopodium [L.filo = a thread; podium = foot]: • The filopodium is a slender, thread-like or filamentous projection. • It is formed by the ectoplasm alone and without a hyaline cap. • The filaments are narrow and may be branched but do not anastomose, Filopodium is the characteristic in Filosea (e.g., Euglypha ). (c) Reticulopodium or Rhizopodium [L. reticulos = a net, podium = foot]: • Similar in structure to that of filopodium but the branches anastomose. • The numerous branched and anastomosed pseudopodia form a dense network, help primarily in capturing the prey and the secondary function is locomotion. -
Brown Algae and 4) the Oomycetes (Water Molds)
Protista Classification Excavata The kingdom Protista (in the five kingdom system) contains mostly unicellular eukaryotes. This taxonomic grouping is polyphyletic and based only Alveolates on cellular structure and life styles not on any molecular evidence. Using molecular biology and detailed comparison of cell structure, scientists are now beginning to see evolutionary SAR Stramenopila history in the protists. The ongoing changes in the protest phylogeny are rapidly changing with each new piece of evidence. The following classification suggests 4 “supergroups” within the Rhizaria original Protista kingdom and the taxonomy is still being worked out. This lab is looking at one current hypothesis shown on the right. Some of the organisms are grouped together because Archaeplastida of very strong support and others are controversial. It is important to focus on the characteristics of each clade which explains why they are grouped together. This lab will only look at the groups that Amoebozoans were once included in the Protista kingdom and the other groups (higher plants, fungi, and animals) will be Unikonta examined in future labs. Opisthokonts Protista Classification Excavata Starting with the four “Supergroups”, we will divide the rest into different levels called clades. A Clade is defined as a group of Alveolates biological taxa (as species) that includes all descendants of one common ancestor. Too simplify this process, we have included a cladogram we will be using throughout the SAR Stramenopila course. We will divide or expand parts of the cladogram to emphasize evolutionary relationships. For the protists, we will divide Rhizaria the supergroups into smaller clades assigning them artificial numbers (clade1, clade2, clade3) to establish a grouping at a specific level. -
History of Microbiology: Spontaneous Generation Theory
HISTORY OF MICROBIOLOGY: SPONTANEOUS GENERATION THEORY Microbiology often has been defined as the study of organisms and agents too small to be seen clearly by the unaided eye—that is, the study of microorganisms. Because objects less than about one millimeter in diameter cannot be seen clearly and must be examined with a microscope, microbiology is concerned primarily with organisms and agents this small and smaller. Microbial World Microorganisms are everywhere. Almost every natural surface is colonized by microbes (including our skin). Some microorganisms can live quite happily in boiling hot springs, whereas others form complex microbial communities in frozen sea ice. Most microorganisms are harmless to humans. You swallow millions of microbes every day with no ill effects. In fact, we are dependent on microbes to help us digest our food and to protect our bodies from pathogens. Microbes also keep the biosphere running by carrying out essential functions such as decomposition of dead animals and plants. Microbes are the dominant form of life on planet Earth. More than half the biomass on Earth consists of microorganisms, whereas animals constitute only 15% of the mass of living organisms on Earth. This Microbiology course deals with • How and where they live • Their structure • How they derive food and energy • Functions of soil micro flora • Role in nutrient transformation • Relation with plant • Importance in Industries The microorganisms can be divided into two distinct groups based on the nucleus structure: Prokaryotes – The organism lacking true nucleus (membrane enclosed chromosome and nucleolus) and other organelles like mitochondria, golgi body, entoplasmic reticulum etc. are referred as Prokaryotes. -
Eukaryotic Cell Structure and Function: (Part 1)
Harriet Wilson, Lecture Notes Bio. Sci. 4 - Microbiology Sierra College Eukaryotic Cell Structure and Function: (Part 1) The science or study of cell structure and function is called cytology; but courses dealing with this topic frequently come under the heading of cell and molecular biology. Cytology has undergone extensive change over time. The term cell (cella = a small room) was first used by Robert Hooke (1665) with reference to an empty space or chamber (like a prison cell). Hooke was observing the cell walls of dead cork cells from the bark of cork oaks, and not living cells. We now know cells are far from empty spaces. According to the cell theory, as articulated by Matthias Schleiden and Theodor Schwann (1839), the cell is the basic unit of structure and function in all, living organisms. When first written, the cell theory indicated that living cells could arise spontaneously through abiogenesis, but experiments conducted by Louis Pasteur and others invalidated this concept. Instead, it is now recognized that all cells arise from preexisting cells, and that they carry hereditary information (DNA) that is passed from one generation to the next through cell division. Cells are currently divided into two types, Prokaryotic and Eukaryotic. The term karyon (karyon = nucleus) appears in both names, and is preceded by either pro, meaning before or eu meaning well or truly. Fossil and molecular evidence indicates that prokaryotic cells evolved first, and that the larger, nucleated cells evolved later. Some of the distinguishing features of these two cell types are outlined below. A typical prokaryotic cell (Before a nucleus): Does not contain a nucleus surrounded by a nuclear membrane or envelope.