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1 Curriculum Vitae Patrick Joseph Calie 130 Redbud Dr. Dept. of Biological Sciences Berea, KY 40403 Eastern Kentucky Unive

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1 Curriculum Vitae Patrick Joseph Calie 130 Redbud Dr. Dept. of Biological Sciences Berea, KY 40403 Eastern Kentucky Unive 1 Curriculum Vitae Patrick Joseph Calie 130 Redbud Dr. Dept. of Biological Sciences Berea, KY 40403 Eastern Kentucky University Richmond, KY 40475 [email protected] 859-622-1543 http://biology.eku.edu/people/calie ORCID ID: 0000-0003-3705-4742 HIGHER EDUCATION Institution Major Dates/Degree University of Tennessee Botany 1981-1986/Ph.D. University of Tennessee Botany 1977-1980/M.S. Rutgers University Botany 1971-1975/B.A. Newark College of Arts and Sciences Research Training and Development Institution/Dates Department Position University of Michigan Microbiology and Sr. Research Fellow 1990-1992 Immunology Prokaryotic Gene Expression University of Michigan Biology Postdoctoral Fellow 1986-1990 Plant Molecular Evolution University of Tennessee Biochemistry Sr. Research Assistant 1980-1981 Eukaryotic Gene Regulation PROFESSIONAL APPOINTMENTS Institution Department/Program Position/Dates New York Botanical Garden North American Botany Visiting Scholar (Sabbatical appointment) 2017-2018 University of Kentucky Plant Pathology Visiting Scholar 2011-present University of Kentucky Plant Pathology Visiting Scholar (Sabbatical appointment) 2010-2011 Eastern Kentucky University Biological Sciences Professor 2001-present 2 University of Tennessee Botany Faculty Associate (Sabbatical appointment) 1999-2000 University of Kentucky Professional Education Instructor Preparation Program 1999- 2018 (summer) Eastern Kentucky University Biological Sciences Associate Professor 1995-2001 University of Kentucky Health Careers Instructor Opportunity Program 1992-1996 (summer) Eastern Kentucky University Biological Sciences Assistant Professor 1992-1995 University of Tennessee Biology Instructor Summer 1980 University of Tennessee Botany Herbarium Assistant 1977-1978 Honors Honorary member, the Mortarboard Society 1995 Honorary member, Golden Key National Honor Society 1994 Member, Phi Sigma Scientific Research Society 1993 Member, Sigma Xi Biology Honor Society 1983 Graduated from Rutgers University cum Laude 1975 Fellowships and Awards Nominated, Critical Thinking Teaching Award 2019 EKU Class of 2012 Teaching “Star” 2012 EKU Critical Thinking Teacher of the Year Award 2012 EKU CA&S Golden Apple Teaching Award 2009 EKU Distinguished Educational Leader 2007, 2008 EKU College of Arts and Sciences Research Award 2001 EKU Faculty Research Enhancement Award 1998 NIH NRSA NIGMS Postdoctoral Fellowship 1987-1990 Arthur F. Thurnau Postdoctoral Fellowship (Univ. of Michigan) 1987 BRL Sequence Analysis Workshop Tuition Award (Univ. of TN) 1985 University of Tennessee Predoctoral Fellowship 1984-1985 Association of Southeastern Biologists Travel Award 1980 Professional Offices Held President, EKU Chapter of Sigma Xi 1996-1997, 1998-1999, 2010-2017 Vice-President, EKU Chapter of Sigma Xi 1995-1996, 1997-1998 Secretary-Treasurer, EKU Chapter of Sigma Xi 1993-1995 3 Grants and Contracts NSF DOB “ Dimensions US-China: Collaborative 2021-2025 $78,832 Research: Impacts of heritable plant-fungus symbiosis on phylogenetic, genetic and functional diversity” (co-PI; C. Schardl P.I.) NIH/INBRE Faculty Startup Award for 2020-2021 $15,000 L. Middleton NSF DEB “Imperiled plants of tropical rivers: 2019-2021 $138,717 Phylogeny, biogeography and systematics of Podostemaceae” (PI; transferred from B. Ruhfel co-PI) KBRIN Lead Faculty Award – NIH/INBRE 2019-2024 $110, 806 (co-PI; Nigel Cooper – PI) NSF MCB “Role of Telomeres in Fungal Genome Evolution” (Co-PI; M. Farman PI) 2017-2021 $59,736 KBRIN Lead Faculty Award – NIH/INBRE (co-PI; Nigel Cooper – PI) 2014-2019 $106,415 NIH/INBRE Faculty Startup Award for B. Kraemer 2016-2017 $30,000 NIH/INBRE Faculty Startup Award for L. Calderon 2013-2014 $59,040 KBRIN Lead Faculty Award – NIH/INBRE 2009-2014 $73,065 (co-PI; Nigel Cooper – PI) NSF EPSCoR Kentucky Genomics and Informatics 2008-2012 $205,000 Infrastructure (co-PI; Chris Schardl – PI) “An evaluation of the evolutionary relationships among the three genera in the flowering plant family Sarraceniaceae (Ericales)” L.R. Hesler Research Award (Univ. of Tennessee) 2008-2010 $4,588 NSF EPSCoR New Faculty Recruitment Award 2007-2008 $60,000 (co-PI w/ R. Frederick) LI-COR GEMF Matching Fund Award (declined) 2006 $51,321 KBRIN Lead Faculty Award - NIH/INBRE (co-PI; Nigel Cooper – PI) 2004-2009 $152,036 Proteomics and Bioinformatics - NIH/INBRE 2004-2009 $974,498 (co-PI; Nigel Cooper - PI) Administrative Supplement Grant for the NIH/KBRIN 2003 $22,975 (co-PI; Nigel Cooper – PI) 4 Research Supplemental Grant for the NIH/KBRIN: 2002-2004 $111,657 “Population Biology of Short’s Goldenrod” (co-PI; Nigel Cooper – PI) Enhancement of the Undergraduate Experience In Bioinformatrics – NIH/KBRIN 2001-2004 $163,841 (co-PI; Nigel Cooper – PI) “Determination of the generic limits and phylogeny of The subtribe Solidagininae (Asteraceae)” – L.R. Hesler Endowment Award 2001-2002 $3, 900 “Genetic profile of the endangered Solidago shortii (Asteraceae)” – USFWS/USDA 1999-2000 $6,510 “An examination of the phylogeny of the Southeastern Solidago species” - L.R. Hesler Endowment Award 1999-2000 $6,105 “Characterization of the rapidly evolving rpl23/rpoA operon in Pelargonium hortorum” - NSF EPSCoR REG 1998-1999 $20,824 “An assessment of hybridization between Solidago shortii and S. nemoralis”- Kentucky State Nature Preserves Commission 1998-1999 $4,781 EKU Institutional Faculty Research Awards 1992-1993, 1993-1994, 1994-1995, 1995-1996, 1998-1999, 1999-2000, 2001-2002, 2004-2005 Total -$35, 588 “An evaluation of hornwort evolutionary relationships through plastid DNA rearrangements” - KAS Marcia Athey Fund 1993-1994 $1,550 “An examination of bryophyte plastid DNA RFLPs as phylogenetic markers” - L.R. Hesler Research Award 1991-1992 $5,228 Publications (30) Lander, R.M. and P.J. Calie. 2017. Exploring inquiry: household chemicals and their impact on seed germination and plant growth. The American Biology Teacher 79: 107-109. (29) Ellison, A.M., C.C. Davis, P.J. Calie, and R.F.C. Naczi. 2014. Pitcher plants (Sarracenia) provide a 21st-century perspective on interspecific and infraspecific ranks: a modest proposal for appropriate recognition and use. Systematic Botany 39: 939-949. DOI: http://dx.doi.org/10.1600/036364414X681473 5 (28) Schardl, C.L., S. Florea, J. Pan, P. Nagabhyru, S. Bec, P.J. Calie. 2013. The epichloae: alkaloid diversity and roles in symbiosis with grasses. Current Opinion in Plant Biology 16: 480-488. (27) Christopher L. Schardl, Carolyn A. Young, Uljana Hesse, Stefan G. Amyotte, Kalina Andreeva , Patrick J. Calie , Damien J. Fleetwood , David C. Haws , Neil Moore, Birgitt Oeser , Daniel G. Panaccione , Kathryn K. Schweri, Christine R. Voisey, Mark L. Farman, Jerzy W. Jaromczyk, Bruce A. Roe, Donal M. O’Sullivan, Barry Scott, Paul Tudzynski, Zhiqiang An, Elissaveta G. Arnaoudova, Charles T. Bullock, Nikki D. Charlton, Li Chen, Murray Cox, Randy D. Dinkins, Simona Florea, Anthony E. Glenn, Anna Gordon, Ulrich Güldener, Daniel R. Harris, Walter Hollin, Jolanta Jaromczyk, Richard D. Johnson, Anar K. Khan, Eckhard Leistner, Adrian Leuchtmann, Chunjie Li, JinGe Liu, Jinze Liu, Miao Liu, Wade Mace, Caroline Machado, Padmaja Nagabhyru, Juan Pan, Jan Schmid, Koya Sugawara, Ulrike Steiner, Johanna E. Takach, Eiji Tanaka, Jennifer S. Webb, Ella V. Wilson, Jennifer Wiseman, Ruriko Yoshida, Zheng Zeng. 2013. Plant-symbiotic fungi as chemical engineers: Multi-genome analysis of the Clavicipitaceae reveals dynamics of alkaloid loci. PLoS Genetics 9: e1003323. (26) Ellison, A.M., Butler, E.B., Hicks, E.J., Naczi, R.F.C., Calie, P.J., Bell. C.D., and Davis, C.C. 2012. Phylogeny of the carnivorous plant family Sarraceniaceae. PLoS One 7: e39291. (25) Schilling, E.E., Beck, J.B., Calie, P.J. and Small. R. L. 2008. Molecular analysis of Solidaster cv. Lemore, a hybrid goldenrod (Asteraceae). J. BRIT 2: 7-18. (24) Calie, P.J., Lee, S.H., and Hicks, E.J. 2007. The bioinformatic enhancement of exercises in Drosophila genetics. The American Biology Teacher 69: 482-489. (23) Chumley, T.W., Palmer, J.D., Mower, J.P., Fourcade, H.M., Calie, P.J., Boore, J.L., and Jansen, R.K. 2006. The complete chloroplast genome sequence of Pelargonium x hortorum: Organization and evolution of the largest and most highly rearranged chloroplast genome of land plants. Molecular Biology and Evolution 23: 2175-2190. (22) Calie, P.J., Shackleford, C., Caicedo, J., and Naczi, R.F.C. 2006. High levels of seed inviability among seven populations of the endangered Short’s goldenrod (Solidago shortii – Asteraceae). Sida 22: 735-748. (21) Calie, P.J. 2005. A mutant hunt using the C-Fern (Ceratopteris richardii). The American Biology Teacher 67: 295-299. (20) Smith, B.D., Denham, A.J., Beck, J.B., and Calie, P.J. 2004. High resolution GIS mapping and current status of the ten viable populations of Short’s goldenrod (Solidago shortii – Asteraceae) in Kentucky. Sida 21:1121-1130. (19) Beck, J.B., Nesom, G., Calie, P.J., Small, R.K., and Schilling, E.S. 2004. Is Solidagininae monophyletic? Taxon 53: 691-698. 6 (18) Millen, R.A., Olmstead, R.G., Adams, K.L., Palmer, J.D., Lao,N.T., Heggie,L., Kavanaugh, T.A., Hibberd,J.M., Gray, J.C., Morden, C.W., Calie, P.J., Jermiin, L.S., and Wolfe, K.D. 2001. Many parallel losses of infA from chloroplast DNA during angiosperm evolution with multiple independent transfers to the nucleus. The Plant Cell 13: 645-658. (17) Beck, J.B., Naczi, R.F.C., and Calie, P.J. 2001. Insights into the species delineation and population structure of Solidago shortii (Asteraceae) through morphometric analysis. Rhodora
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