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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
§4-71-6.5 LIST of CONDITIONALLY APPROVED ANIMALS November
§4-71-6.5 LIST OF CONDITIONALLY APPROVED ANIMALS November 28, 2006 SCIENTIFIC NAME COMMON NAME INVERTEBRATES PHYLUM Annelida CLASS Oligochaeta ORDER Plesiopora FAMILY Tubificidae Tubifex (all species in genus) worm, tubifex PHYLUM Arthropoda CLASS Crustacea ORDER Anostraca FAMILY Artemiidae Artemia (all species in genus) shrimp, brine ORDER Cladocera FAMILY Daphnidae Daphnia (all species in genus) flea, water ORDER Decapoda FAMILY Atelecyclidae Erimacrus isenbeckii crab, horsehair FAMILY Cancridae Cancer antennarius crab, California rock Cancer anthonyi crab, yellowstone Cancer borealis crab, Jonah Cancer magister crab, dungeness Cancer productus crab, rock (red) FAMILY Geryonidae Geryon affinis crab, golden FAMILY Lithodidae Paralithodes camtschatica crab, Alaskan king FAMILY Majidae Chionocetes bairdi crab, snow Chionocetes opilio crab, snow 1 CONDITIONAL ANIMAL LIST §4-71-6.5 SCIENTIFIC NAME COMMON NAME Chionocetes tanneri crab, snow FAMILY Nephropidae Homarus (all species in genus) lobster, true FAMILY Palaemonidae Macrobrachium lar shrimp, freshwater Macrobrachium rosenbergi prawn, giant long-legged FAMILY Palinuridae Jasus (all species in genus) crayfish, saltwater; lobster Panulirus argus lobster, Atlantic spiny Panulirus longipes femoristriga crayfish, saltwater Panulirus pencillatus lobster, spiny FAMILY Portunidae Callinectes sapidus crab, blue Scylla serrata crab, Samoan; serrate, swimming FAMILY Raninidae Ranina ranina crab, spanner; red frog, Hawaiian CLASS Insecta ORDER Coleoptera FAMILY Tenebrionidae Tenebrio molitor mealworm, -
Evolution of Different Y Chromosomes in Two Medaka Species, Oryzias Dancena and O
Copyright Ó 2007 by the Genetics Society of America DOI: 10.1534/genetics.106.068247 Evolution of Different Y Chromosomes in Two Medaka Species, Oryzias dancena and O. latipes Yusuke Takehana,*,1,2 Diana Demiyah,*,1 Kiyoshi Naruse,† Satoshi Hamaguchi* and Mitsuru Sakaizumi* *Graduate School of Science and Technology, Niigata University, Ikarashi, Niigata 950-2181, Japan and †Department of Biological Science, School of Science, University of Tokyo, Bunkyo-ku, Tokyo, 113-0033, Japan Manuscript received November 14, 2006 Accepted for publication December 19, 2006 ABSTRACT Although the sex-determining gene DMY has been identified on the Y chromosome in the medaka (Oryzias latipes), this gene is absent in most Oryzias species, suggesting that closely related species have different sex-determining genes. Here, we investigated the sex-determination mechanism in O. dancena, which does not possess the DMY gene. Since heteromorphic sex chromosomes have not been reported in this species, a progeny test of sex-reversed individuals produced by hormone treatment was performed. Sex-reversed males yielded all-female progeny, indicating that O. dancena has an XX/XY sex-determination system. To uncover the cryptic sex chromosomes, sex-linked DNA markers were screened using expressed sequence tags (ESTs) established in O. latipes. Linkage analysis of isolated sex-linked ESTs showed a conserved synteny between the sex chromosomes in O. dancena and an autosome in O. latipes. Fluorescence in situ hybridization (FISH) analysis of these markers confirmed that sex chromosomes of these species are not homologous. These findings strongly suggest an independent origin of sex chromosomes in O. dancena and O. latipes. -
Fish Fauna of the Sikao Creek Mangrove Estuary, Trang, Thailand
FISHERIES SCIENCE 2002; 68: 10–17 Original Article Fish fauna of the Sikao Creek mangrove estuary, Trang, Thailand Prasert TONGNUNUI,1 Kou IKEJIMA,2–4* Takeshi YAMANE,4 Masahiro HORINOUCHI,4 Tomon MEDEJ,1 Mitsuhiko SANO,4 Hisashi KUROKURA4 AND Toru TANIUCHI2a 1Faculty of Science and Fisheries Technology, Rajamangala Institute of Technology, Sikao, Trang 92150, Thailand, 2Department of Aquatic Bioscience, Graduate School of Agricultural and Life Sciences, 3Asian Natural Environmental Science Center and 4Department of Global Agricultural Sciences, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo, Tokyo 113-8657, Japan ABSTRACT: Between September 1996 and March 1999, a total of 135 fish species in 43 families were recorded from the mangrove estuary of Sikao Creek, Trang Province, Thailand, using two sizes of beach seine and a bag net. A checklist of the species is given, with preliminary descriptions of their assemblage structure. In terms of the number of species per family, Gobiidae was the most diverse (28 species), followed by Leiognathidae (11 species) and Engraulidae (10 species). In terms of individual numbers, Engraulidae, Leiognathidae and Ambassidae were the most dominant, whereby the 20 most abundant species comprised 88.5% of the total number of individuals collected. The fish assemblage structure was compared with published accounts of other tropical Indo-West Pacific mangrove estuaries, and found to be similar to those of tropical Australia. Although a grater number of species were recorded from Sikao Creek than in comparable studies in other geographic regions, all of the studies were similar in that they have relatively few species that are clearly dominant in abundance. -
Effect of Diuron on Embryo-Larval Development of Javanese Medaka (Oryzias Javanicus, Bleeker 1854)
Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 13 September 2020 doi:10.20944/preprints202009.0290.v1 Article Effect of diuron on embryo-larval development of Javanese medaka (Oryzias javanicus, Bleeker 1854) Musa Adamu Ibrahim1, 2, Syaizwan Zahmir Zulkifli1,3 *, Mohammad Noor Amal Azmai1,5, Ferdaus Mohamat-Yusuff3,4, Ahmad Ismail1 1 Department of Biology, Faculty of Science, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor, Malaysia; [email protected] (M.A.I.); [email protected] (S.Z.Z.); [email protected] (M.N.A.A.); [email protected] (A.I.) 2 Department of Biological Sciences, Faculty of Science, University of Maiduguri, P.M.B. 1069, Maiduguri, Nigeria; [email protected] (M.A.I.) 3 International Institute of Aquaculture and Aquatic Sciences (i-AQUAS), Universiti Putra Malaysia, Batu 7, Jalan Kemang 6, Teluk Kemang 71050 Si Rusa, Port Dickson, Negeri Sembilan, Malaysia; [email protected] (S.Z.Z.); [email protected] (F.M.Y.) 4 Department of Environmental Sciences, Faculty of Environmental Studies, Universiti Putra Malaysia, 43400, UPM Serdang, Selangor, Malaysia; [email protected] (F.M.Y.) 5 Institute of Bioscience, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor, Malaysia; [email protected] (M.N.A.A.) * Correspondence: [email protected]; Tel.: +60-13-3975787 (S.Z.Z.) Abstract: Some herbicides exert hormetic or biphasic non-monotonic dose-response (NMDR), which is one of the major challenges for ecological risk assessment (ERA) of pesticides pollution. In this study, fish embryo toxicity test (FET) with Javanese medaka (Oryzias javanicus) to sublethal concentration of diuron was determined. -
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Journal ofThreatened JoTT TaxaBuilding evidence for conservation globally 10.11609/jott.2020.12.10.16195-16406 www.threatenedtaxa.org 26 July 2020 (Online & Print) Vol. 12 | No. 10 | Pages: 16195–16406 ISSN 0974-7907 (Online) | ISSN 0974-7893 (Print) PLATINUM OPEN ACCESS Dedicated to Dr. P. Lakshminarasimhan ISSN 0974-7907 (Online); ISSN 0974-7893 (Print) Publisher Host Wildlife Information Liaison Development Society Zoo Outreach Organization www.wild.zooreach.org www.zooreach.org No. 12, Thiruvannamalai Nagar, Saravanampatti - Kalapatti Road, Saravanampatti, Coimbatore, Tamil Nadu 641035, India Ph: +91 9385339863 | www.threatenedtaxa.org Email: [email protected] EDITORS English Editors Mrs. Mira Bhojwani, Pune, India Founder & Chief Editor Dr. Fred Pluthero, Toronto, Canada Dr. Sanjay Molur Mr. P. Ilangovan, Chennai, India Wildlife Information Liaison Development (WILD) Society & Zoo Outreach Organization (ZOO), 12 Thiruvannamalai Nagar, Saravanampatti, Coimbatore, Tamil Nadu 641035, Web Development India Mrs. Latha G. Ravikumar, ZOO/WILD, Coimbatore, India Deputy Chief Editor Typesetting Dr. Neelesh Dahanukar Indian Institute of Science Education and Research (IISER), Pune, Maharashtra, India Mr. Arul Jagadish, ZOO, Coimbatore, India Mrs. Radhika, ZOO, Coimbatore, India Managing Editor Mrs. Geetha, ZOO, Coimbatore India Mr. B. Ravichandran, WILD/ZOO, Coimbatore, India Mr. Ravindran, ZOO, Coimbatore India Associate Editors Fundraising/Communications Dr. B.A. Daniel, ZOO/WILD, Coimbatore, Tamil Nadu 641035, India Mrs. Payal B. Molur, Coimbatore, India Dr. Mandar Paingankar, Department of Zoology, Government Science College Gadchiroli, Chamorshi Road, Gadchiroli, Maharashtra 442605, India Dr. Ulrike Streicher, Wildlife Veterinarian, Eugene, Oregon, USA Editors/Reviewers Ms. Priyanka Iyer, ZOO/WILD, Coimbatore, Tamil Nadu 641035, India Subject Editors 2016–2018 Fungi Editorial Board Ms. -
A Stenohaline Medaka, Oryzias Woworae, Increases Expression of Gill Na+, K+-Atpase and Na+, K+, 2Cl– Cotransporter 1 to Tolerate Osmotic Stress
ZOOLOGICAL SCIENCE 33: 414–425 (2016) © 2016 Zoological Society of Japan A Stenohaline Medaka, Oryzias woworae, Increases Expression of Gill Na+, K+-ATPase and Na+, K+, 2Cl– Cotransporter 1 to Tolerate Osmotic Stress Jiun-Jang Juo1†, Chao-Kai Kang2†, Wen-Kai Yang1†, Shu-Yuan Yang1, and Tsung-Han Lee1,3* 1Department of Life Sciences, National Chung Hsing University, Taichung 402, Taiwan 2Tainan Hydraulics Laboratory, National Cheng Kung University, Tainan 709, Taiwan 3Department of Biological Science and Technology, China Medical University, Taichung 404, Taiwan The present study aimed to evaluate the osmoregulatory mechanism of Daisy’s medaka, O. woworae, as well as demonstrate the major factors affecting the hypo-osmoregulatory characteristics of eury- haline and stenohaline medaka. The medaka phylogenetic tree indicates that Daisy’s medaka belongs to the celebensis species group. The salinity tolerance of Daisy’s medaka was assessed. Our findings revealed that 20‰ (hypertonic) saltwater (SW) was lethal to Daisy’s medaka. However, 62.5% of individuals survived 10‰ (isotonic) SW with pre-acclimation to 5‰ SW for one week. This transfer regime, “Experimental (Exp.) 10‰ SW”, was used in the following experiments. After 10‰ SW-transfer, the plasma osmolality of Daisy’s medaka significantly increased. The protein abun- dance and distribution of branchial Na+, K+-ATPase (NKA) and Na+, K+, 2Cl– cotransporter 1 (NKCC1) were also examined after transfer to 10‰ SW for one week. Gill NKA activity increased significantly after transfer to 10‰ SW. Meanwhile, elevation of gill NKA α-subunit protein- abundance was found in the 10‰ SW-acclimated fish. In gill cross-sections, more and larger NKA- immunoreactive (NKA-IR) cells were observed in the Exp. -
Evaluation of Visible Fluorescent Elastomer Tags Implanted in Marine Medaka, Oryzias Dancena
Im et al. Fisheries and Aquatic Sciences (2017) 20:21 DOI 10.1186/s41240-017-0066-8 RESEARCH ARTICLE Open Access Evaluation of visible fluorescent elastomer tags implanted in marine medaka, Oryzias dancena Jae Hyun Im1, Hyun Woo Gil2, In-Seok Park2* , Cheol Young Choi2, Tae Ho Lee2, Kwang Yeol Yoo3, Chi Hong Kim4 and Bong Seok Kim4 Abstract: The aim of this study was to assess visible implant fluorescent elastomer (VIE) tagging and stress response in marine medaka, Oryzias dancena. The experimental fish were anesthetized individually and marked with red, yellow, or green elastomer at each of the following three body locations: (1) the abdomen, (2) the back, and (3) the caudal vasculature. During 12 months, the accumulated survival rates of fish in the experimental treatments were not different among red, yellow, and green elastomers. The experimental fish retained > 85% of the tags injected in the back, > 70% of the tags injected in the caudal vasculature, and > 60% of the tags injected in the abdomen (P<0.05). An important observation was that the abdomen site was associated with poor tag retention. For all injected sites, the red and green tags were able to be detected more easily than the yellow tags when observed under both visible and UV lights. Tag readability was lower for the abdomen site than for the other sites (back and caudal vasculature). Thus, VIE tags were easy to apply to marine medaka (< 1 min per fish) and were readily visible when viewed under UV light. Keywords: Marine medaka, Oryzias dancena, Readability, Visible fluorescent elastomer tag Background gonadogenesis, sexual differentiation, early ontogenesis, The marine medaka, Oryzias dancena, is nonindigenous embryogenesis, and exceptional capacity for hyperos- to South Korea and is a bony fish with high tolerance to moregulation and hypoosmoregulation. -
A Revised Taxonomic Account of Ricefish Oryzias (Beloniformes; Adrianichthyidae), in Thailand, Indonesia and Japan
The Natural History Journal of Chulalongkorn University 9(1): 35-68, April 2009 ©2009 by Chulalongkorn University A Revised Taxonomic Account of Ricefish Oryzias (Beloniformes; Adrianichthyidae), in Thailand, Indonesia and Japan WICHIAN MAGTOON 1* AND APHICHART TERMVIDCHAKORN 2 1 Department of Biology, Faculty of Science, Srinakharinwirot University, Bangkok 10110, Thailand 2 Inland Fisheries Research and Development Bureau, Department of Fisheries, Bangkok 10900, Thailand ABSTRACT.– A taxonomic account of Oryzias minutillus, O. mekongensis, O. dancena, and O. javanicus from Thailand, O. celebensis from Indonesia and O. latipes from Japan are redescribed. Six distinct species are recognized. Keys, descriptions and illustrations of the species are presented. Morphological differences between and within all six species are clarified. Twenty-two morphometric characters and ten meristic characters were examined, and 14 morphometric and nine meristic characters were found to differ amongst the six species. Anal-fin ray numbers of O. cellebensis, O. javanicus, O. dancena, O. minutillus, O. latipes and O. mekongensis were 22, 23, 24, 19, 18 and 15, respectively. These differences suggest that the six species may be reproductively isolated from each other. KEY WORDS: Oryzias, Revision, Morphological difference, Cluster analysis four species are known from Thailand, Laos, INTRODUCTION Myanmar, and Vietnam, but eleven species are found from Indonesia and one species in Ricefish of the genus Oryzias belong to Japan (Magtoon, 1986; Roberts, 1998; the family Adrianichthyidae and are widely Kotellat 2001a, b; Parenti and Soeroto, 2004; distributed in South, East and Southeast Asia Parenti, 2008). and southwards to Sulawesi and the Timor Recently, there have been several studies islands (Yamamoto, 1975; Labhart, 1978; published on various aspects of Oryzias Uwa and Parenti, 1988; Chen et al., 1989; biology, for instance on the comparative Uwa, 1991a; Roberts, 1989, 1998). -
Oryzias Sakaizumii, a New Ricefish from Northern Japan (Teleostei: Adrianichthyidae)
289 Ichthyol. Explor. Freshwaters, Vol. 22, No. 4, pp. 289-299, 7 figs., 1 tab., December 2011 © 2011 by Verlag Dr. Friedrich Pfeil, München, Germany – ISSN 0936-9902 Oryzias sakaizumii, a new ricefish from northern Japan (Teleostei: Adrianichthyidae) Toshinobu Asai*, ***, Hiroshi Senou** and Kazumi Hosoya* Oryzias sakaizumii, new species, is described from Japanese freshwaters along the northern coast of the Sea of Japan. It is distinguished from its Japanese congener, O. latipes, by a slightly notched membrane between dorsal- fin rays 5 and 6 in males (greatly notched in O. latipes); dense network of melanophores on the body surface (diffuse melanophores in O. latipes); distinctive irregular black spots on posterior portion of body lateral (absent in O. latipes); and several silvery scales arranged in patches on the posterior portion of the body (few in O. lati pes). Introduction south along the Indo-Australian Archipelago across Wallace’s line to the Indonesian islands of Ricefishes, adrianichthyid fishes of the atheri- Timor and Sulawesi (Kottelat, 1990a-b; Takehana nomorph order Beloniformes, comprise 32 most- et al., 2005). ly small species, including the new species de- Oryzias latipes was originally described as scribed herein (Herder & Chapuis, 2010; Magtoon, Poecilia latipes by Temminck & Schlegel (1846), 2010; Parenti & Hadiaty, 2010). The family Adri- from Siebold’s collection now at the RMNH, the anichthyidae has been classified in three sub- Netherlands. Subsequently, this species was clas- families with four genera – Adrianichthys, Oryzias, sified in the genus Haplochilus by Günter (1866), Xenopoecilus, and Horaichthys – since 1981 (Rosen an incorrect spelling of Aplocheilus, hence Aplo- & Parenti, 1981; Nelson, 2006). -
JAGO TOLIS : Jurnal Agrokompleks Tolis Vol
JAGO TOLIS : Jurnal Agrokompleks Tolis Vol. 1 No. 1 (hal. 1-5) Herjayanto et al., (2021) PERFORMA ADAPTASI PASCAPENGANGKUTAN IKAN PADI Oryzias javanicus DENGAN KEPADATAN BERBEDA (ADAPTATION PERFORMANCE POST-TRANSPORTATION OF JAVANESE RICEFISH Oryzias javanicus WITH DIFFERENT DENSITY) Muh. Herjayanto1,4, Imadiah Aulia1,5, Edo Ahmad Solahudin1,5, Mila Wahyuningsih1,5, Aditya Baariz Ramadhan1,5, Elinda Kusuma Dewi1,5, Lukman Anugrah Agung1, Haeru Wahyudin1,5, Suardi Laheng2,4, Jhon Meirta Ginting1,5, Evan Danisworo1,5, Abdul Gani3,4 1. Program Studi Ilmu Perikanan, Fakultas Pertanian, Universitas Sultan Ageng Tirtayasa 2. Program Studi Budidaya Perairan, Fakultas Perikanan, Universitas Madako 3. Program Studi Akuakultur, Fakultas Perikanan, Universitas Muhamadiyah Luwuk 4. Ekspedisi Riset Akuatika (ERA) Indonesia 5. Himpunan Mahasiswa Perikanan (HIMAPI), Universitas Sultan Ageng Tirtayasa E-mail: [email protected] ABSTRAK Ikan padi Oryzias javanicus adalah spesies yang euryhaline, mudah dipelihara, dan dikembangbiakkan sehingga dapat menjadi ikan model untuk penelitian di laboratorium. Ikan ini juga memiliki potensi sebagai ikan hias untuk akuaskap. Budidaya ikan O. javanicus belum populer sehingga pengadaan ikan ini mengandalkan hasil tangkapan alam. Ikan liar hasil tangkapan alam membutuhkan adaptasi di dalam wadah terkontrol. Salah satu faktor yang mempengaruhi performa adaptasi awal yaitu kepadatan ikan selama pengangkutan sistem tertutup. Kondisi yang terlalu padat berdampak pada performa adaptasi ikan yang kurang baik. Oleh karena itu, penelitian ini bertujuan untuk mengkaji performa adaptasi O. javanicus selama pemeliharaan pascapengangkutan. Performa berkaitan dengan sintasan, tingkah laku, dan jumlah telur selama 15 hari pemeliharaan. Kepadatan ikan yaitu 24 ekor/L (perlakuan A) dan 40 ekor/L (perlakuan B) yang dikemas selama 6 jam. Hasil penelitian menunjukkan bahwa pengangkutan ikan O. -
Oryzias Minutillus Populations Within the Various Regions of Thailand Were Observed
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Srinakharinwirot University: SWU e-Journals System ∫∑§«“¡√—∫‡™‘≠ A Study on Morphology, Cytogenetics and Mitochondrial DNA Sequences of Ricefish, Oryzias in Thailand Wichian Magtoon* Introduction Ricefish in the genus Oryzias are small mostly freshwater fish commonly found in the ponds, ditches, and paddy fields associated with rice paddy ecoagrocultural systems. They are endemic in Asia and 28 species have been reported from India to Japan and throughout the Indo-Australian Archipelago [1, 2]. Oryzias has become one of the important model organisms due to its short life cycle, small size, oviparity and breeding capacity in laboratories and artificial ponds. Oryzias also provides good material for studies of species differentiation and geographical distribution of freshwater fishes in Asia because various species of Oryzias are distributed from tropics to the temperate regions. The first species of the genus Oryzias to be described was O. latipes (or medaka in Japan) which has been studied in many areas of biological research by Japanese and European scientists. Recently, other species of Oryzias have been employed to examine morphology, embryology and development, karyotype, isozyme, nucleotide sequences as well as sex determination and geographical distribution. Thailand is located in the tropical region and has excellent biodiversity. Smith [3] and Vidthayanon et al. [4] studied freshwater fishes in the country and found 17 orders, 56 families and 570 species. Taxonomists, including Parenti, Kotellat and Roberts [2, 5, 6] identified specimens mainly based on morphological characters. Department of Biology, Faculty of Science, Srinakharinwirot University *Corresponding author, email: [email protected] Table 1.