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Organic Chemistry
Wisebridge Learning Systems Organic Chemistry Reaction Mechanisms Pocket-Book WLS www.wisebridgelearning.com © 2006 J S Wetzel LEARNING STRATEGIES CONTENTS ● The key to building intuition is to develop the habit ALKANES of asking how each particular mechanism reflects Thermal Cracking - Pyrolysis . 1 general principles. Look for the concepts behind Combustion . 1 the chemistry to make organic chemistry more co- Free Radical Halogenation. 2 herent and rewarding. ALKENES Electrophilic Addition of HX to Alkenes . 3 ● Acid Catalyzed Hydration of Alkenes . 4 Exothermic reactions tend to follow pathways Electrophilic Addition of Halogens to Alkenes . 5 where like charges can separate or where un- Halohydrin Formation . 6 like charges can come together. When reading Free Radical Addition of HX to Alkenes . 7 organic chemistry mechanisms, keep the elec- Catalytic Hydrogenation of Alkenes. 8 tronegativities of the elements and their valence Oxidation of Alkenes to Vicinal Diols. 9 electron configurations always in your mind. Try Oxidative Cleavage of Alkenes . 10 to nterpret electron movement in terms of energy Ozonolysis of Alkenes . 10 Allylic Halogenation . 11 to make the reactions easier to understand and Oxymercuration-Demercuration . 13 remember. Hydroboration of Alkenes . 14 ALKYNES ● For MCAT preparation, pay special attention to Electrophilic Addition of HX to Alkynes . 15 Hydration of Alkynes. 15 reactions where the product hinges on regio- Free Radical Addition of HX to Alkynes . 16 and stereo-selectivity and reactions involving Electrophilic Halogenation of Alkynes. 16 resonant intermediates, which are special favor- Hydroboration of Alkynes . 17 ites of the test-writers. Catalytic Hydrogenation of Alkynes. 17 Reduction of Alkynes with Alkali Metal/Ammonia . 18 Formation and Use of Acetylide Anion Nucleophiles . -
Sodium Borohydride (Nabh4) Itself Is a Relatively Mild Reducing Agent
1770 Vol. 35 (1987) Chem. Pharm. Bull. _35( 5 )1770-1776(1987). Reactions of Sodium Borohydride. IV.1) Reduction of Aromatic Sulfonyl Chlorides with Sodium Borohydride ATSUKO NOSE and TADAHIRO KUDO* Daiichi College of Pharmaceutical Sciences, 22-1 Tamagawa-cho, Minami-ku, Fukuoka 815, Japan (Received September 12, 1986) Aromatic sulfonyl chlorides were reduced with sodium borohydride in tetrahydrofuran at 0•Ž to the corresponding sulfinic acids in good yields. Further reduction proceeded when the reaction was carried out under reflux in tetrahydrofuran to give disulfide and thiophenol derivatives via sulfinic acid. Furthermore, sulfonamides were reduced with sodium borohydride by heating directly to give sulfide, disulfide and thiophenol derivatives, and diphenyl sulfone was reduced under similar conditions to give thiophenol and biphenyl. Keywords reduction; sodium borohydride; aromatic sulfonyl chloride; sulfonamide; sulfone; aromatic sulfinic acid; disulfide; sulfide; thiophenol Sodium borohydride (NaBH4) itself is a relatively mild reducing agent which is extensively used for the selective reduction of the carbonyl group of ketone, aldehyde and (carboxylic) acid halide derivatives. In the previous papers, we reported that NaBI-14 can reduce some functional groups, such as carboxylic anhydrides,2) carboxylic acids3) and nitro compounds.1) As a continuation of these studies, in the present paper, we wish to report the reduction of aromatic sulfonyl chlorides, sulfinic acids and sulfonamides with NaBH4. Many methods have been reported for the reduction of sulfonyl chlorides to sulfinic acids, such as the use of sodium sulfite,4a-d) zinc,5) electrolytic reduction,6) catalytic reduction,7) magnesium,8) sodium amalgam,9) sodium hydrogen sulfite,10) stannous chlo- TABLE I. -
N* Interactions Modulate the Properties of Cysteine Residues
n →π* Interactions Modulate the Properties of Cysteine Residues and Disulfide Bonds in Proteins The MIT Faculty has made this article openly available. Please share how this access benefits you. Your story matters. Citation Kilgore, Henry R. and Ronald T. Raines. “n →π* Interactions Modulate the Properties of Cysteine Residues and Disulfide Bonds in Proteins.” Journal of the American Chemical Society 140 (2018): 17606-17611 © 2018 The Author(s) As Published https://dx.doi.org/10.1021/JACS.8B09701 Publisher American Chemical Society (ACS) Version Author's final manuscript Citable link https://hdl.handle.net/1721.1/125597 Terms of Use Article is made available in accordance with the publisher's policy and may be subject to US copyright law. Please refer to the publisher's site for terms of use. HHS Public Access Author manuscript Author ManuscriptAuthor Manuscript Author J Am Chem Manuscript Author Soc. Author Manuscript Author manuscript; available in PMC 2019 May 21. Published in final edited form as: J Am Chem Soc. 2018 December 19; 140(50): 17606–17611. doi:10.1021/jacs.8b09701. n➝π* Interactions Modulate the Properties of Cysteine Residues and Disulfide Bonds in Proteins Henry R. Kilgore and Ronald T. Raines* Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States Abstract Noncovalent interactions are ubiquitous in biology, taking on roles that include stabilizing the conformation of and assembling biomolecules, and providing an optimal environment for enzymatic catalysis. Here, we describe a noncovalent interaction that engages the sulfur atoms of cysteine residues and disulfide bonds in proteins—their donation of electron density into an antibonding orbital of proximal amide carbonyl groups. -
23.5 Basicity and Acidity of Amines
23_BRCLoudon_pgs5-0.qxd 12/8/08 1:22 PM Page 1122 1122 CHAPTER 23 • THE CHEMISTRY OF AMINES alkylamines, this resonance occurs at rather small chemical shift—typically around d 1. In aromatic amines, this resonance is at greater chemical shift, as in the second of the preceding examples. Like the OH protons of alcohols, phenols, and carboxylic acids, the NH protons of amines under most conditions undergo rapid exchange (Secs. 13.6 and 13.7D). For this reason, split- ting between the amine N H and adjacent C H groups is usually not observed. Thus, in the NMR spectrum of diethylamine,L the N H resonanceL is a singlet rather than the triplet ex- pected from splitting by the adjacent CHL2 protons. In some amine samples, the N H resonance is broadened and, like the OL H protonL of alcohols, it can be obliterated fromL the spectrum by exchange with D2O (the “DL2O shake,” p. 611). The characteristic 13C NMR absorptions of amines are those of the a-carbons—the carbons attached directly to the nitrogen. These absorptions occur in the d 30–50 chemical-shift range. As expected from the relative electronegativities of oxygen and nitrogen, these shifts are somewhat less than the a-carbon shifts of ethers. PROBLEMS 23.4 Identify the compound that has an M 1 ion at mÜz 136 in its CI mass spectrum, an IR 1 + = absorption at 3279 cm_ , and the following NMR spectrum: d 0.91 (1H, s), d 1.07 (3H, t, J 7Hz), d 2.60 (2H, q, J 7Hz), d 3.70 (2H, s), d 7.18 (5H, apparent s). -
Validation of a Methodology to Determine Benzene, Toluene
M. L. Gallego-Diez et al.; Revista Facultad de Ingeniería, No. 79, pp. 138-149, 2016 Revista Facultad de Ingeniería, Universidad de Antioquia, No. 79, pp. 138-149, 2016 Validation of a methodology to determine Benzene, Toluene, Ethylbenzene, and Xylenes concentration present in the air and adsorbed in activated charcoal passive samplers by GC/ FID chromatography Validación de una metodología para la determinación de la concentración de Benceno, Tolueno, Etilbenceno y Xilenos, presentes en muestras aire y adsorbidos en captadores pasivos de carbón activado, mediante cromatografía GC/FID Mary Luz Gallego-Díez1*, Mauricio Andrés Correa-Ochoa2, Julio César Saldarriaga-Molina2 1Facultad de Ingeniería, Universidad de Antioquia. Calle 67 # 53- 108. A. A. 1226. Medellín, Colombia. 2Grupo de Ingeniería y Gestión Ambiental (GIGA), Facultad de Ingeniería, Universidad de Antioquia. Calle 67 # 53- 108. A. A. 1226. Medellín, Colombia. ARTICLE INFO ABSTRACT: This article shows the validation of the analytical procedure which allows Received August 28, 2015 determining concentrations of Benzene (B), Toluene (T), Ethylbenzene (E), and Xylenes (X) Accepted April 02, 2016 -compounds known as BTEX- present in the air and adsorbed by over activated charcoal by GC-FID using the (Fluorobenzene) internal standard addition as quantification method. In the process, reference activated charcoal was employed for validation and coconut -base granular charcoal (CGC) for the construction of passive captors used in sample taken in external places or in environmental air. CGC material was selected from its recovering capacity of BTEX, with an average of 89.1% for all analytes. In this research, BTEX presence KEYWORDS in air samples, taken in a road of six lines and characterized for having heavy traffic, in Validation, activated Medellín city (Antioquia, Colombia), was analyzed. -
THIOL OXIDATION a Slippery Slope the Oxidation of Thiols — Molecules RSH Oxidation May Proceed Too Predominates
RESEARCH HIGHLIGHTS Nature Reviews Chemistry | Published online 25 Jan 2017; doi:10.1038/s41570-016-0013 THIOL OXIDATION A slippery slope The oxidation of thiols — molecules RSH oxidation may proceed too predominates. Here, the maximum of the form RSH — can afford quickly for intermediates like RSOH rate constants indicate the order − − − These are many products. From least to most to be spotted and may also afford of reactivity: RSO > RS >> RSO2 . common oxidized, these include disulfides intractable mixtures. Addressing When the reactions are carried out (RSSR), as well as sulfenic (RSOH), the first problem, Chauvin and Pratt in methanol-d , the obtained kinetic reactions, 1 sulfinic (RSO2H) and sulfonic slowed the reactions down by using isotope effect values (kH/kD) are all but have (RSO3H) acids. Such chemistry “very sterically bulky thiols, whose in the range 1.1–1.2, indicating that historically is pervasive in nature, in which corresponding sulfenic acids were no acidic proton is transferred in the been very disulfide bonds between cysteine known to be isolable but were yet rate-determining step. Rather, the residues stabilize protein structures, to be thoroughly explored in terms oxidations involve a specific base- difficult to and where thiols and thiolates often of reactivity”. The second problem catalysed mechanism wherein an study undergo oxidation by H2O2 or O2 in was tackled by modifying the model acid–base equilibrium precedes the order to protect important biological system, 9-mercaptotriptycene, by rate-determining nucleophilic attack − − − structures from damage. Among including a fluorine substituent to of RS , RSO or RSO2 on H2O2. the oxidation products, sulfenic serve as a spectroscopic handle. -
S.T.E.T.Women's College, Mannargudi Semester Iii Ii M
S.T.E.T.WOMEN’S COLLEGE, MANNARGUDI SEMESTER III II M.Sc., CHEMISTRY ORGANIC CHEMISTRY - II – P16CH31 UNIT I Aliphatic nucleophilic substitution – mechanisms – SN1, SN2, SNi – ion-pair in SN1 mechanisms – neighbouring group participation, non-classical carbocations – substitutions at allylic and vinylic carbons. Reactivity – effect of structure, nucleophile, leaving group and stereochemical factors – correlation of structure with reactivity – solvent effects – rearrangements involving carbocations – Wagner-Meerwein and dienone-phenol rearrangements. Aromatic nucleophilic substitutions – SN1, SNAr, Benzyne mechanism – reactivity orientation – Ullmann, Sandmeyer and Chichibabin reaction – rearrangements involving nucleophilic substitution – Stevens – Sommelet Hauser and von-Richter rearrangements. NUCLEOPHILIC SUBSTITUTION Mechanism of Aliphatic Nucleophilic Substitution. Aliphatic nucleophilic substitution clearly involves the donation of a lone pair from the nucleophile to the tetrahedral, electrophilic carbon bonded to a halogen. For that reason, it attracts to nucleophile In organic chemistry and inorganic chemistry, nucleophilic substitution is a fundamental class of reactions in which a leaving group(nucleophile) is replaced by an electron rich compound(nucleophile). The whole molecular entity of which the electrophile and the leaving group are part is usually called the substrate. The nucleophile essentially attempts to replace the leaving group as the primary substituent in the reaction itself, as a part of another molecule. The most general form of the reaction may be given as the following: Nuc: + R-LG → R-Nuc + LG: The electron pair (:) from the nucleophile(Nuc) attacks the substrate (R-LG) forming a new 1 bond, while the leaving group (LG) departs with an electron pair. The principal product in this case is R-Nuc. The nucleophile may be electrically neutral or negatively charged, whereas the substrate is typically neutral or positively charged. -
Synthesis and Chemistry of Indole
Synthesis and Chemistry of Indole 1. Introduction: ➢ Indole is a benzo[b]pyrrole formed by the fusion of benzene ring to the 2,3 positions of pyrrole nucleus. ➢ The word “Indole” is derived from the word India, as the heterocycle was first isolated from a blue dye “Indigo” produced in India during sixteenth century. ➢ In 1886, Adolf Baeyer isolated Indole by the pyrolysis of oxindole with Zn dust. Oxindole was originally obtained by the reduction of isatin, which in turn was isolated by the oxidation of Indigo. ➢ Commercially indole is produced from coal tar ➢ Indole is the most widely distributed heterocyle ➢ Indole nucleus is an integral part of thousands of naturally occurring alkaloids, drugs and other compounds. By Dr. Divya Kushwaha 2. Synthesis of Indole 2.1. Fischer Indole Synthesis: ➢ This reaction was discovered in 1983 by Emil Fischer and so far remained the most extensively used method of preparation of indoles. ➢ The synthesis involves cyclization of arylhydrazones under heating conditions in presence of protic acid or lewis acids such as ZnCl2, PCl3, FeCl3, TsOH, HCl, H2SO4, PPA etc. ➢ The starting material arylhydrazoles can be obtained from aldehydes, ketones, keto acids, keto esters and diketones etc. ➢ Reaction produces 2,3-disubtituted products. Unsymmetrical ketones can give a mixture of indoles. 2.2 Madelung Synthesis: ➢ Base catalyzed cyclization of 2-(acylamino)-toluenes under very harsh conditions (typically sodium amide or potassium t-butoxide at 250-300oC). ➢ Limited to the synthesis of simple indoles such as 2-methyl indoles without having any sensitive groups. By Dr. Divya Kushwaha Mechanism: ➢ A modern variant of madelung reaction is performed under milder conditions by the use of alkyllithiums as bases. -
Chem 232 Lecture 19
CHEM 232 University of Illinois Organic Chemistry I at Chicago UIC Lecture 19 Organic Chemistry 1 Professor Duncan Wardrop March 16, 2010 1 CHEM 232 University of Illinois Organic Chemistry I at Chicago UIC Chapter 9 Alkynes Sources and Nomenclature Sections 9.1 - 9.6 2 CHEM 232 University of Illinois Organic Chemistry I at Chicago UIC Exam Two • Monday, April 5 • 6:00-7:15 p.m. • 250 SES • Chapters 6-10, 13 • Makeup Exam: Monday, April 12, time t.b.a. Makeup policy: There are no makeup exams without prior approval. Only students showing proof of a class con!ict will have the option to take a makeup exam. To be added to the makeup list, you must email me no later than Friday, April. 2. 3 Self-Test Question Which column lists the correct mechanistic symbol for each description? A B C D E Methyl halides react with sodium ethoxide in ethanol only by this mechanism. SN2 SN1 E2 SN2 SN1 Unhindered primary halides react with sodium ethoxide in ethanol mainly by this mechanism. SN2 SN2 SN2 SN2 SN1 Cyclohexyl bromide reacts with sodium ethoxide in ethanol, mainly by this mechanism. E2 SN1 E2 SN2 SN1 The product obtained by solvolysis of tert-butyl bromide in ethanol arises by this mechanism. SN1 SN2 SN2 SN2 E2 In ethanol that contains sodium ethoxide, tert-butyl bromide in ethanol reacts mainly by this mechanism. E2 E2 SN1 SN1 E2 University of Slide CHEM 232, Spring 2010 4 Illinois at Chicago UIC Lecture 19: March 16 4 Substitution/Elimination Review SN2 H3C Cl + OCH2CH3 H3C OCH2CH3 Methyl halides react with sodium ethoxide in • methyl halide = ethanol only by this mechanism. -
Ethylamine Derivatives and Their Use As Antihypertensive Agents
Europaisches Patentamt European Patent Office (fl) Publication number: 0 294 183 Office europeen des brevets A1 ® EUROPEAN PATENT APPLICATION @ Application number: 88305012.2 ® int. a*: C 07 D 211/32 C 07 D 211/22, @ Date of filing: 01.06.88 C 07 D 211/18, C 07 D 285/24, C 07 D 401/06, A 61 K 31/445, A 61 K 31/54 (So) Priority: 02.06.87 JP 138405/87 Toyota, Kozo No. 1-1 Suzuki-cho Kawasaki-ku @ Date of publication of application : Kawasaki-shi Kanagawa-ken (JP) 07.12.88 Bulletin 88/49 Yoshimoto, Ryota No. 1-1 Suzuki-cho Kawasaki-ku @ Designated Contracting States: Kawasaki-shi Kanagawa-ken (JP) CH DE FR GB IT LI Koyama, Yosikatsu @ Applicant: AJINOMOTO CO., INC. No. 1-1 Suzuki-cho Kawasaki-ku 5-8, Kyobashi 1-chome, Chuo-ku Kawasaki-shi Kanagawa-ken (JP) Tokyo 104 (JP) Domoto, Hideki No. 1-1 Suzuki-cho Kawasaki-ku @ Inventor: Syoji, Masataka Kawasaki-shi Kanagawa-ken (JP) No. 1-1 Suzuki-cho Kawasaki-ku Kawasaki-shi Kanagawa-ken (JP) Kamimura, Akira No. 1-1 Suzuki-cho Kawasaki-ku Eguchi, Chikahiko Kawasaki-shi Kahagawa-ken (JP) No. 1-1 Suzuki-cho Kawasaki-ku Kawasaki-shi Kanagawa-ken (JP) Representative: Armitage, Ian Michael et al MEWBURN ELLIS & CO. 2/3 Cursitor Street London EC4A1BQ (GB) (54) Ethylamine derivatives and their use as antihypertensive agents. @ Novel ethylamine derivatives of the formula (I) and salts thereof are useful as antihypertensive agents. Q-X N CH2CH2-A-B (I) \ / CH^ CO 00 wherein A is a linking group wherein the linkage is formed by a carbon or nitrogen atom; B is an aryl-containing group; C is O) hydrogen or optionally substituted alkyl, aralkyl or aryl, or C may CM be bonded to A to form an optionally substituted alkylene bridge; Q is an aryl- or heterocyclic aryl-containing group; X is a linking group wherein the linkage is formed by optionally CL substituted alkylene having from 2 to 20 carbon atoms and/or HI one or more hetero atoms selected from nitrogen and sulfur. -
Aqueous Acid–Base Equilibriums”, Chapter 16 from the Book Principles of General Chemistry (Index.Html) (V
This is “Aqueous Acid–Base Equilibriums”, chapter 16 from the book Principles of General Chemistry (index.html) (v. 1.0M). This book is licensed under a Creative Commons by-nc-sa 3.0 (http://creativecommons.org/licenses/by-nc-sa/ 3.0/) license. See the license for more details, but that basically means you can share this book as long as you credit the author (but see below), don't make money from it, and do make it available to everyone else under the same terms. This content was accessible as of December 29, 2012, and it was downloaded then by Andy Schmitz (http://lardbucket.org) in an effort to preserve the availability of this book. Normally, the author and publisher would be credited here. However, the publisher has asked for the customary Creative Commons attribution to the original publisher, authors, title, and book URI to be removed. Additionally, per the publisher's request, their name has been removed in some passages. More information is available on this project's attribution page (http://2012books.lardbucket.org/attribution.html?utm_source=header). For more information on the source of this book, or why it is available for free, please see the project's home page (http://2012books.lardbucket.org/). You can browse or download additional books there. i Chapter 16 Aqueous Acid–Base Equilibriums Many vital chemical and physical processes take place exclusively in aqueous solution, including the complex biochemical reactions that occur in living organisms and the reactions that rust and corrode steel objects, such as bridges, ships, and automobiles. Among the most important reactions in aqueous solution are those that can be categorized as acid–base, precipitation, and complexation reactions. -
Thiol-Disulfide Exchange in Human Growth Hormone Saradha Chandrasekhar Purdue University
Purdue University Purdue e-Pubs Open Access Dissertations Theses and Dissertations January 2015 Thiol-Disulfide Exchange in Human Growth Hormone Saradha Chandrasekhar Purdue University Follow this and additional works at: https://docs.lib.purdue.edu/open_access_dissertations Recommended Citation Chandrasekhar, Saradha, "Thiol-Disulfide Exchange in Human Growth Hormone" (2015). Open Access Dissertations. 1449. https://docs.lib.purdue.edu/open_access_dissertations/1449 This document has been made available through Purdue e-Pubs, a service of the Purdue University Libraries. Please contact [email protected] for additional information. i THIOL-DISULFIDE EXCHANGE IN HUMAN GROWTH HORMONE A Dissertation Submitted to the Faculty of Purdue University by Saradha Chandrasekhar In Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy August 2015 Purdue University West Lafayette, Indiana ii To my parents Chandrasekhar and Visalakshi & To my fiancé Niranjan iii ACKNOWLEDGEMENTS I would like to thank Dr. Elizabeth M. Topp for her tremendous support, guidance and valuable suggestions throughout. The successful completion of my PhD program would not have been possible without her constant encouragement and enthusiasm. Through the last five years, I’ve learned so much as a graduate student in her lab. My thesis committee members: Dr. Stephen R. Byrn, Dr. Gregory T. Knipp and Dr. Weiguo A. Tao, thank you for your time and for all your valuable comments during my oral preliminary exam. I would also like to thank Dr. Fred Regnier for his suggestions with the work on human growth hormone. I am grateful to all my lab members and friends for their assistance and support. I would like to especially thank Dr.