Exploring Monascus Sanguineus As a Potential Natural Source for Pigment Production
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1 Recurrent Loss of Abaa, a Master Regulator of Asexual Development in Filamentous Fungi
bioRxiv preprint doi: https://doi.org/10.1101/829465; this version posted November 4, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. 1 Recurrent loss of abaA, a master regulator of asexual development in filamentous fungi, 2 correlates with changes in genomic and morphological traits 3 4 Matthew E. Meada,*, Alexander T. Borowskya,b,*, Bastian Joehnkc, Jacob L. Steenwyka, Xing- 5 Xing Shena, Anita Silc, and Antonis Rokasa,# 6 7 aDepartment of Biological Sciences, Vanderbilt University, Nashville, Tennessee, USA 8 bCurrent Address: Department of Botany and Plant Sciences, University of California Riverside, 9 Riverside, California, USA 10 cDepartment of Microbiology and Immunology, University of California San Francisco, San 11 Francisco, California, USA 12 13 Short Title: Recurrent loss of abaA across Eurotiomycetes 14 #Address correspondence to Antonis Rokas, [email protected] 15 16 *These authors contributed equally to this work 17 18 19 Keywords: Fungal asexual development, abaA, evolution, developmental evolution, 20 morphology, binding site, Histoplasma capsulatum, regulatory rewiring, gene regulatory 21 network, evo-devo 22 1 bioRxiv preprint doi: https://doi.org/10.1101/829465; this version posted November 4, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. 23 Abstract 24 Gene regulatory networks (GRNs) drive developmental and cellular differentiation, and variation 25 in their architectures gives rise to morphological diversity. -
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Phylogeny of Penicillium and the Segregation of Trichocomaceae Into Three Families
available online at www.studiesinmycology.org StudieS in Mycology 70: 1–51. 2011. doi:10.3114/sim.2011.70.01 Phylogeny of Penicillium and the segregation of Trichocomaceae into three families J. Houbraken1,2 and R.A. Samson1 1CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands; 2Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands. *Correspondence: Jos Houbraken, [email protected] Abstract: Species of Trichocomaceae occur commonly and are important to both industry and medicine. They are associated with food spoilage and mycotoxin production and can occur in the indoor environment, causing health hazards by the formation of β-glucans, mycotoxins and surface proteins. Some species are opportunistic pathogens, while others are exploited in biotechnology for the production of enzymes, antibiotics and other products. Penicillium belongs phylogenetically to Trichocomaceae and more than 250 species are currently accepted in this genus. In this study, we investigated the relationship of Penicillium to other genera of Trichocomaceae and studied in detail the phylogeny of the genus itself. In order to study these relationships, partial RPB1, RPB2 (RNA polymerase II genes), Tsr1 (putative ribosome biogenesis protein) and Cct8 (putative chaperonin complex component TCP-1) gene sequences were obtained. The Trichocomaceae are divided in three separate families: Aspergillaceae, Thermoascaceae and Trichocomaceae. The Aspergillaceae are characterised by the formation flask-shaped or cylindrical phialides, asci produced inside cleistothecia or surrounded by Hülle cells and mainly ascospores with a furrow or slit, while the Trichocomaceae are defined by the formation of lanceolate phialides, asci borne within a tuft or layer of loose hyphae and ascospores lacking a slit. -
Phylogeny of Chrysosporia Infecting Reptiles: Proposal of the New Family Nannizziopsiaceae and Five New Species
CORE Metadata, citation and similar papers at core.ac.uk Provided byPersoonia Diposit Digital 31, de Documents2013: 86–100 de la UAB www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158513X669698 Phylogeny of chrysosporia infecting reptiles: proposal of the new family Nannizziopsiaceae and five new species A.M. Stchigel1, D.A. Sutton2, J.F. Cano-Lira1, F.J. Cabañes3, L. Abarca3, K. Tintelnot4, B.L. Wickes5, D. García1, J. Guarro1 Key words Abstract We have performed a phenotypic and phylogenetic study of a set of fungi, mostly of veterinary origin, morphologically similar to the Chrysosporium asexual morph of Nannizziopsis vriesii (Onygenales, Eurotiomycetidae, animal infections Eurotiomycetes, Ascomycota). The analysis of sequences of the D1-D2 domains of the 28S rDNA, including rep- ascomycetes resentatives of the different families of the Onygenales, revealed that N. vriesii and relatives form a distinct lineage Chrysosporium within that order, which is proposed as the new family Nannizziopsiaceae. The members of this family show the mycoses particular characteristic of causing skin infections in reptiles and producing hyaline, thin- and smooth-walled, small, Nannizziopsiaceae mostly sessile 1-celled conidia and colonies with a pungent skunk-like odour. The phenotypic and multigene study Nannizziopsis results, based on ribosomal ITS region, actin and β-tubulin sequences, demonstrated that some of the fungi included Onygenales in this study were different from the known species of Nannizziopsis and Chrysosporium and are described here as reptiles new. They are N. chlamydospora, N. draconii, N. arthrosporioides, N. pluriseptata and Chrysosporium longisporum. Nannizziopsis chlamydospora is distinguished by producing chlamydospores and by its ability to grow at 5 °C. -
Duke University Dissertation Template
Systematics, Phylogeography and Ecology of Elaphomycetaceae by Hannah Theresa Reynolds Department of Biology Duke University Date:_______________________ Approved: ___________________________ Rytas Vilgalys, Supervisor ___________________________ Marc Cubeta ___________________________ Katia Koelle ___________________________ François Lutzoni ___________________________ Paul Manos Dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Department of Biology in the Graduate School of Duke University 2011 iv ABSTRACTU Systematics, Phylogeography and Ecology of Elaphomycetaceae by Hannah Theresa Reynolds Department of Biology Duke University Date:_______________________ Approved: ___________________________ Rytas Vilgalys, Supervisor ___________________________ Marc Cubeta ___________________________ Katia Koelle ___________________________ François Lutzoni ___________________________ Paul Manos An abstract of a dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Department of Biology in the Graduate School of Duke University 2011 Copyright by Hannah Theresa Reynolds 2011 Abstract This dissertation is an investigation of the systematics, phylogeography, and ecology of a globally distributed fungal family, the Elaphomycetaceae. In Chapter 1, we assess the literature on fungal phylogeography, reviewing large-scale phylogenetics studies and performing a meta-data analysis of fungal population genetics. In particular, we examined -
Phylogenetic Analysis of Monascus and New Species from Honey, Pollen and Nests of Stingless Bees
available online at www.studiesinmycology.org STUDIES IN MYCOLOGY 86: 29–51 (2017). Phylogenetic analysis of Monascus and new species from honey, pollen and nests of stingless bees R.N. Barbosa1,2, S.L. Leong3, O. Vinnere-Pettersson3,4, A.J. Chen1,5, C.M. Souza-Motta2, J.C. Frisvad6, R.A. Samson1, N.T. Oliveira2, and J. Houbraken1* 1Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands; 2Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Av. Prof. Moraes Rego, s/n, Centro de Bioci^encias, Cidade Universitaria, CEP: 50670-901 Recife, PE, Brazil; 3Swedish University of Agricultural Sciences, Department of Molecular Sciences, Box 7015, SE-750 07 Uppsala, Sweden; 4National Genomics Infrastructure-Sweden, Science for Life Laboratory, Department of Immunology, Genetics and Pathology, Uppsala University, BMC, Box 815, SE-752 37 Uppsala, Sweden; 5Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100193, PR China; 6Department of Biotechnology and Biomedicine, Technical University of Denmark, 2800 Kongens Lyngby, Denmark *Correspondence: J. Houbraken, [email protected] Abstract: The genus Monascus was described by van Tieghem (1884) to accommodate M. ruber and M. mucoroides, two species with non-ostiolate ascomata. Species delimitation in the genus is still mainly based on phenotypic characters, and taxonomic studies that include sequence data are limited. The genus is of economic importance. Species are used in fermented Asian foods as food colourants (e.g. ‘red rice’ (ang-kak, angka)) and found as spoilage organisms, and recently Monascus was found to be essential in the lifecycle of stingless bees. -
Phylogeny of Penicillium and the Segregation of Trichocomaceae Into Three Families
available online at www.studiesinmycology.org StudieS in Mycology 70: 1–51. 2011. doi:10.3114/sim.2011.70.01 Phylogeny of Penicillium and the segregation of Trichocomaceae into three families J. Houbraken1,2 and R.A. Samson1 1CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands; 2Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands. *Correspondence: Jos Houbraken, [email protected] Abstract: Species of Trichocomaceae occur commonly and are important to both industry and medicine. They are associated with food spoilage and mycotoxin production and can occur in the indoor environment, causing health hazards by the formation of β-glucans, mycotoxins and surface proteins. Some species are opportunistic pathogens, while others are exploited in biotechnology for the production of enzymes, antibiotics and other products. Penicillium belongs phylogenetically to Trichocomaceae and more than 250 species are currently accepted in this genus. In this study, we investigated the relationship of Penicillium to other genera of Trichocomaceae and studied in detail the phylogeny of the genus itself. In order to study these relationships, partial RPB1, RPB2 (RNA polymerase II genes), Tsr1 (putative ribosome biogenesis protein) and Cct8 (putative chaperonin complex component TCP-1) gene sequences were obtained. The Trichocomaceae are divided in three separate families: Aspergillaceae, Thermoascaceae and Trichocomaceae. The Aspergillaceae are characterised by the formation flask-shaped or cylindrical phialides, asci produced inside cleistothecia or surrounded by Hülle cells and mainly ascospores with a furrow or slit, while the Trichocomaceae are defined by the formation of lanceolate phialides, asci borne within a tuft or layer of loose hyphae and ascospores lacking a slit. -
Metagenome Sequence of Elaphomyces Granulatus From
bs_bs_banner Environmental Microbiology (2015) 17(8), 2952–2968 doi:10.1111/1462-2920.12840 Metagenome sequence of Elaphomyces granulatus from sporocarp tissue reveals Ascomycota ectomycorrhizal fingerprints of genome expansion and a Proteobacteria-rich microbiome C. Alisha Quandt,1*† Annegret Kohler,2 the sequencing of sporocarp tissue, this study has Cedar N. Hesse,3 Thomas J. Sharpton,4,5 provided insights into Elaphomyces phylogenetics, Francis Martin2 and Joseph W. Spatafora1 genomics, metagenomics and the evolution of the Departments of 1Botany and Plant Pathology, ectomycorrhizal association. 4Microbiology and 5Statistics, Oregon State University, Corvallis, OR 97331, USA. Introduction 2Institut National de la Recherché Agronomique, Centre Elaphomyces Nees (Elaphomycetaceae, Eurotiales) is an de Nancy, Champenoux, France. ectomycorrhizal genus of fungi with broad host associa- 3Bioscience Division, Los Alamos National Laboratory, tions that include both angiosperms and gymnosperms Los Alamos, NM, USA. (Trappe, 1979). As the only family to include mycorrhizal taxa within class Eurotiomycetes, Elaphomycetaceae Summary represents one of the few independent origins of the mycorrhizal symbiosis in Ascomycota (Tedersoo et al., Many obligate symbiotic fungi are difficult to maintain 2010). Other ectomycorrhizal Ascomycota include several in culture, and there is a growing need for alternative genera within Pezizomycetes (e.g. Tuber, Otidea, etc.) approaches to obtaining tissue and subsequent and Cenococcum in Dothideomycetes (Tedersoo et al., genomic assemblies from such species. In this 2006; 2010). The only other genome sequence pub- study, the genome of Elaphomyces granulatus was lished from an ectomycorrhizal ascomycete is Tuber sequenced from sporocarp tissue. The genome melanosporum (Pezizales, Pezizomycetes), the black assembly remains on many contigs, but gene space perigord truffle (Martin et al., 2010). -
Monascus Fermented Rice and Its Beneficial Aspects: a New Review
Asian Journal of Pharmaceutical and Clinical Research Vol. 4, Issue 1, 2011 ISSN - 0974-2441 Review Article MONASCUS FERMENTED RICE AND ITS BENEFICIAL ASPECTS: A NEW REVIEW C. ARUNACHALAM* AND D. NARMADHAPRIYA Research Department of Microbiology, Sri Sankara Arts and Science College, Enathur, Kanchipuram -.India E-mail: [email protected] ABSTRACT Monascus fermented rice has been traditionally used as a natural food colorant and food preservative of meat and fish for centuries. Monascus fermented products gradually regarded as the functional food because the monacolin K (antihypercholesterolemic agents), γ-aminobutyric acid (GABA) (hypotensive agent), and dimerumic acid (antioxidant) were found. This review article describes about the History and traditional use of Monascus fermented rice, Fermentation conditions for pigment production and Pharmacological aspects which include effects in cholesterol lowering, Anti-Diabetic Activity, Anti-Inflammation and prevention of Osteoporosis. Key words: Monascus purpureus, Pigments, Solid State Fermentation, Pharmacological effects, Red Yeast Rice (RYR). INTRODUCTION described in addition to the therapeutic activities, including the betterness of digestion and revitalizing the blood circulation7. Microorganisms are known to produce pigments, among them, the fungi Monascus purpureus is one such agent that produce a variety of Angkak were also found to posses many pharmaceutical aspects. It pigments which posses several beneficial aspects to humans. The was already published during the Ming Dynasty (A.D 1368-1644), pigments produced by Monascus are considered as the most described with the medicinal function of angkak for the treatment important agent, which have been used for centuries as food of indigestion and diarrhea, bruised muscles, hangovers and colic colorant in Eastern countries. -
What Is the Fungal Diversity of Marine Ecosystems in Europe?
mycologist 20 (2006) 15– 21 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/mycol What is the Fungal Diversity of Marine Ecosystems in Europe? Eleanor T. LANDY*, Gerwyn M. JONES School of Biomedical and Molecular Sciences, University of Surrey, Guildford, Surrey, GU2 7XH, UK abstract Keywords: Diversity In 2001 the European Register of Marine Species 1.0 was published (Costello et al. 2001 and Europe http://erms.biol.soton.ac.uk/, and latterly: http://www.marbef.org/data/stats.php) [Costello Fungi MJ, Emblow C, White R, 2001. European register of marine species: a check list of the marine Marine species in Europe and a bibliography of guides to their identification. Collection Patrimoines Naturels 50, 463p.]. The lists of species (from fungi to mammals) were published as part of a European Union Concerted action project (funded by the European Union Marine Science and Technology (MAST) research programme) and the updated version (ERMS 2) is EU- funded through the Marine Biodiversity and Ecosystem Functioning (MARBEF) Framework project 6 Network of Excellence. Among these lists, a list of the fungi isolated and identified from coastal and marine ecosystems in Europe was included (Clipson et al. 2001) [Clipson NJW, Landy ET, Otte ML, 2001. Fungi. In@ Costelloe MJ, Emblow C, White R (eds), European register of marine species: a check-list of the marine species in Europe and a bibliography of guides to their identification. Collection Patrimoines Naturels 50: 15–19.]. This article deals with the results of compiling a new taxonomically correct and complete list of all fungi that have been reported occurring in European marine waters. -
The Morphology and Structure of Red Pigment Producing Fungus: Monascus Purpureus
Journal of Microbiology & Experimentation Research Article Open Access The morphology and structure of red pigment producing Fungus: Monascus Purpureus Abstract Volume 5 Issue 1 - 2017 The red pigment producing, ascospore forming fungus Monascus purpureus was obtained Musaalbakri Abdul Manan,1 Rosfarizan by monospore isolation and maintained on potato dextrose agar at 32°C for 7 days. M. 2 2 purpureus produces compact colonies of mycelia and accumulates large quantities of red Mohamad, Arbakariya Ariff 1Biotechnology and Nanotechnology Research Centre, pigment. Here we aimed to describe this newly isolated red pigment producing fungus Malaysian Agricultural Research and Development Institute using biochemical and microscopy technique. A newly isolated red pigment producing (MARDI), Malaysia fungus from local red fermented rice was identified using Microbial Identification 2Department of Bioprocess Technology, Universiti Putra Malaysia System based on fatty acids profiles. The growth, morphology, and structure of M. (UPM), Malaysia purpureus were characterized by Scanning Electron Microscopy (SME). We found that M. purpureus reproduces sexually (by the formation of cleistothecium with ascospores) and Correspondence: Arbakariya Ariff, Department of Bioprocess asexual (by the formation of conidia). In Monascus species, the formation of either asexual Technology, Faculty of Biotechnology and Biomolecular Sciences, or sexual spores appears to be an effective growth strategy. On the basis of biochemical Universiti Putra Malaysia (UPM), 43400 -
Thematic Area: Conservation of Fungi Moderator: Dr
XVI Congress of Euroepan Mycologists, N. Marmaras, Halkidiki, Greece September 18-23, 2011 Abstracts NAGREF-Forest Research Institute, Vassilika, Thessaloniki, Greece. XVI CEM Organizing Committee Dr. Stephanos Diamandis (chairman, Greece) Dr. Charikleia (Haroula) Perlerou (Greece) Dr. David Minter (UK, ex officio, EMA President) Dr. Tetiana Andrianova (Ukraine, ex officio, EMA Secretary) Dr. Zapi Gonou (Greece, ex officio, EMA Treasurer) Dr. Eva Kapsanaki-Gotsi (University of Athens, Greece) Dr. Thomas Papachristou (Greece, ex officio, Director of the FRI) Dr. Nadia Psurtseva (Russia) Mr. Vasilis Christopoulos (Greece) Mr. George Tziros (Greece) Dr. Eleni Topalidou (Greece) XVI CEM Scientific Advisory Committee Professor Dr. Reinhard Agerer (University of Munich, Germany) Dr. Vladimir Antonin (Moravian Museum, Brno, Czech Republic) Dr. Paul Cannon (CABI & Royal Botanic Gardens, Kew, UK) Dr. Anders Dahlberg (Swedish Species Information Centre, Uppsala, Sweden) Dr. Cvetomir Denchev (Institute of Biodiversity and Ecosystem Research , Bulgarian Academy of Sciences, Bulgaria) Dr. Leo van Griensven (Wageningen University & Research, Netherlands) Dr. Eva Kapsanaki-Gotsi (University of Athens, Greece) Professor Olga Marfenina (Moscow State University, Russia) Dr. Claudia Perini (University of Siena, Italy) Dr. Reinhold Poeder (University of Innsbruck, Austria) Governing Committee of the European Mycological Association (2007-2011) Dr. David Minter President, UK Dr. Stephanos Diamandis Vice-President, Greece Dr. Tetiana Andrianova Secretary, Ukraine Dr. Zacharoula Gonou-Zagou Treasurer, Greece Dr. Izabela Kalucka Membership Secretary, Poland Dr. Ivona Kautmanova Meetings Secretary, Slovakia Dr. Machiel Nordeloos Executive Editor, Netherlands Dr. Beatrice Senn-Irlett Conservation officer, Switzerland Only copy-editing and formatting of abstracts have been done, therefore the authors are fully responsible for the scientific content of their abstracts Abstract Book editors Dr.