National Institute of Genetics Japan
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Conserving Europe's Threatened Plants
Conserving Europe’s threatened plants Progress towards Target 8 of the Global Strategy for Plant Conservation Conserving Europe’s threatened plants Progress towards Target 8 of the Global Strategy for Plant Conservation By Suzanne Sharrock and Meirion Jones May 2009 Recommended citation: Sharrock, S. and Jones, M., 2009. Conserving Europe’s threatened plants: Progress towards Target 8 of the Global Strategy for Plant Conservation Botanic Gardens Conservation International, Richmond, UK ISBN 978-1-905164-30-1 Published by Botanic Gardens Conservation International Descanso House, 199 Kew Road, Richmond, Surrey, TW9 3BW, UK Design: John Morgan, [email protected] Acknowledgements The work of establishing a consolidated list of threatened Photo credits European plants was first initiated by Hugh Synge who developed the original database on which this report is based. All images are credited to BGCI with the exceptions of: We are most grateful to Hugh for providing this database to page 5, Nikos Krigas; page 8. Christophe Libert; page 10, BGCI and advising on further development of the list. The Pawel Kos; page 12 (upper), Nikos Krigas; page 14: James exacting task of inputting data from national Red Lists was Hitchmough; page 16 (lower), Jože Bavcon; page 17 (upper), carried out by Chris Cockel and without his dedicated work, the Nkos Krigas; page 20 (upper), Anca Sarbu; page 21, Nikos list would not have been completed. Thank you for your efforts Krigas; page 22 (upper) Simon Williams; page 22 (lower), RBG Chris. We are grateful to all the members of the European Kew; page 23 (upper), Jo Packet; page 23 (lower), Sandrine Botanic Gardens Consortium and other colleagues from Europe Godefroid; page 24 (upper) Jože Bavcon; page 24 (lower), Frank who provided essential advice, guidance and supplementary Scumacher; page 25 (upper) Michael Burkart; page 25, (lower) information on the species included in the database. -
Genome Constitution and Evolution of Elytrigia
Wang et al. BMC Plant Biology (2019) 19:158 https://doi.org/10.1186/s12870-019-1779-x RESEARCH ARTICLE Open Access Genome constitution and evolution of Elytrigia lolioides inferred from Acc1, EF-G, ITS, TrnL-F sequences and GISH Long Wang1,2, Yuanyuan Jiang3, Qinghua Shi4, Yi Wang1, Lina Sha1, Xing Fan1, Houyang Kang1, Haiqin Zhang1, Genlou Sun5, Li Zhang3 and Yonghong Zhou1,2* Abstract Background: Elytrigia lolioides (Kar. et Kir.) Nevski, which is a perennial, cross-pollinating wheatgrass that is distributed in Russia and Kazakhstan, is classified into Elytrigia, Elymus,andLophopyrum genera by taxonomists on the basis of different taxonomic classification systems. However, the genomic constitution of E. lolioides is still unknown. To identify the genome constitution and evolution of E. lolioides, we used single-copy nuclear genes acetyl-CoA carboxylase (Acc1) and elongation factor G (EF-G), multi-copy nuclear gene internal transcribed space (ITS), chloroplast gene trnL-F together with fluorescence and genomic in situ hybridization. Results: Despite the widespread homogenization of ITS sequences, two distinct lineages (genera Pseudoroegneria and Hordeum)wereidentified.Acc1 and EF-G sequences suggested that in addition to Pseudoroegneria and Hordeum, unknown genome was the third potential donor of E. lolioides. Data from chloroplast DNA showed that Pseudoroegneria is the maternal donor of E. lolioides. Data from specific FISH marker for St genome indicated that E. lolioides has two sets of St genomes. Both genomic in situ hybridization (GISH) and fluorescence in situ hybridization (FISH) results confirmed the presence of Hordeum genome in this species. When E genome was used as the probe, no signal was found in 42 chromosomes. -
Taxonomy and Phylogeny in Triticeae: a Historical Review and Current Status
Advances in Plants & Agriculture Research Review Article Open Access Taxonomy and phylogeny in Triticeae: a historical review and current status Abstract Volume 3 Issue 5 - 2016 The Triticeae is an economically important tribe within the Poaceae. Because a number of cereal crops and forage grasses belong to the tribe it has attracted much scientific Mohannad G Al–Saghir attention covering many species: taxonomy, phylogeny, genetics, cytogenetic, genome Department of Environmental and Plant Biology, Ohio analyses (crossing ability and chromosome pairing), isoenzymes, molecular biology University, USA (RFLP, RAPD, PCR sequencing) and breeding. This paper contains a brief historical outline of the taxonomy of the tribe. Phylogenetic hypotheses regarding this tribe Correspondence: Mohannad G Al–Saghir, Department of inferred from different methods, techniques and approaches, are reviewed. The Environmental and Plant Biology, Ohio University, Zanesville, different phylogenies are discussed and compared and conflicts are elucidated. Ohio, USA, Email al–[email protected] Keywords: triticeae, phylogeny, taxonomy, poaceae, perennial species, durum Received: April 23, 2016 | Published: May 10, 2016 wheat, phylogenies, genetic diversity, cytogenetics, molecular biology, chromosomes, perennial, caespitose, thizomatous species Introduction as cited above. We can therefore conclude that the most appropriate outgroup for the tribe will be Bromus. The tribe Triticeae Dum is economically the most important tribe in the grass family (Poaceae). It encompasses between 350 and 500 Definition annual or perennial species,1–3 including the important cereal crops wheat (Triticum aestivium L.), durum wheat (T. turgidum sup. durum The Triticeae encompasses annual and perennial, caespitose or (Desf. MacKay) barley (Hordeum vulgare L.), rye (Secale cereal L.) thizomatous species. -
Characterization of Two Novel Γ-Gliadin Genes Encoded by K Genome of Crithopsis Delileana and Evolution Analysis with Those from Triticeae
See discussions, stats, and author profiles for this publication at: http://www.researchgate.net/publication/226113878 Characterization of two novel γ-gliadin genes encoded by K genome of Crithopsis delileana and evolution analysis with those from Triticeae ARTICLE in GENES & GENOMICS · JUNE 2010 Impact Factor: 0.6 · DOI: 10.1007/s13258-010-0005-x CITATIONS READS 3 17 10 AUTHORS, INCLUDING: Zhi-Fu Guo Li Zhang Shenyang Agricultural University 241 PUBLICATIONS 2,955 CITATIONS 12 PUBLICATIONS 187 CITATIONS SEE PROFILE SEE PROFILE Li-Jing Chen Shenyang Agricultural University 8 PUBLICATIONS 23 CITATIONS SEE PROFILE Li-Jun Zhang 13 PUBLICATIONS 129 CITATIONS SEE PROFILE Available from: Zhi-Fu Guo Retrieved on: 25 December 2015 Genes & Genomics (2010) 32: 259-265 DOI 10.1007/s13258-010-0005-x RESEARCH ARTICLE Characterization of two novel γ-gliadin genes encoded by K genome of Crithopsis delileana and evolution analysis with those from Triticeae Zhi-Fu Guo · Ming Zhong · Yu-Ming Wei · Li Zhang · Hui Ma · Hao-Ge Li · Li-Jing Chen · Jing-Wei Lin · Li-Jun Zhang · You-Liang Zheng 1) Received: 25 January 2010 / Accepted: 28 March 2010 / Published online: 30 June 2010 © The Genetics Society of Korea and Springer 2010 Abstract precious information for better understanding the qualities as- By acid polyacrylamide gel electrophoresis (A-PAGE) analy- sociated with gliadins, the response in coeliac disease and sis, it was indicated that the electrophoresis mobility of glia- studying the evolutionary relationship of gliadins in Triticeae. dins from Crithopsis delileana (Schult) Roshev (2n=2x=14, KK) had obvious difference with those from common wheat Keywords Crithopsis delileana; Gene cloning; γ-gliadin; phylo- in α, γ and ω region. -
Who's Related to Whom?
149 Who’s related to whom? Recent results from molecular systematic studies Elizabeth A Kellogg Similarities among model systems can lead to generalizations systematist’s question-why are there so many different about plants, but understanding the differences requires kinds of organisms? Studies of the evolution of develop- systematic data. Molecular phylogenetic analyses produce ment demand that the investigator go beyond the model results similar to traditional classifications in the grasses system and learn the pattern of variation in its relatives (Poaceae), and relationships among the cereal crops [3*]. This requires a reasonable assessment of the relatives’ are quite clear. Chloroplast-based phylogenies for the identity. Solanaceae show that tomato is best considered as a species of Solarium, closely related to potatoes. Traditional Knowledge of plant relationships has increased rapidly classifications in the Brassicaceae are misleading with in the past decade, reflecting partly the development regard to true phylogenetic relationships and data are only of molecular systematics. It has been known for some now beginning to clarify the situation. Molecular data are time that plant classifications do not reflect phylogeny also being used to revise our view of relationships among accurately, even though both phylogeny and classification flowering plant families. Phylogenetic data are critical for are hierarchical. The hierarchy of classification was interpreting hypotheses of the evolution of development. imposed in the late 18th century, well before ideas of descent with modification (evolution) were prevalent [4]. These pre-evolutionary groups were then re-interpreted in Address an evolutionary context, and were assumed to be products Harvard University Herbaria, 22 Divinity Avenue Cambridge, MA of evolution, rather than man-made artefacts. -
Large Trees, Supertrees, and Diversification of the Grass Family Trevor R
Aliso: A Journal of Systematic and Evolutionary Botany Volume 23 | Issue 1 Article 19 2007 Large Trees, Supertrees, and Diversification of the Grass Family Trevor R. Hodkinson Trinity College, Dublin, Ireland Nicolas Salamin University of Lausanne, Lausanne, Switzerland Mark W. Chase Royal Botanic Gardens, Kew, UK Yanis Bouchenak-Khelladi Trinity College, Dublin, Ireland Stephen A. Renvoize Royal Botanic Gardens, Kew, UK See next page for additional authors Follow this and additional works at: http://scholarship.claremont.edu/aliso Part of the Botany Commons, and the Ecology and Evolutionary Biology Commons Recommended Citation Hodkinson, Trevor R.; Salamin, Nicolas; Chase, Mark W.; Bouchenak-Khelladi, Yanis; Renvoize, Stephen A.; and Savolainen, Vincent (2007) "Large Trees, Supertrees, and Diversification of the Grass Family," Aliso: A Journal of Systematic and Evolutionary Botany: Vol. 23: Iss. 1, Article 19. Available at: http://scholarship.claremont.edu/aliso/vol23/iss1/19 Large Trees, Supertrees, and Diversification of the Grass Family Authors Trevor R. Hodkinson, Nicolas Salamin, Mark W. Chase, Yanis Bouchenak-Khelladi, Stephen A. Renvoize, and Vincent Savolainen This article is available in Aliso: A Journal of Systematic and Evolutionary Botany: http://scholarship.claremont.edu/aliso/vol23/iss1/ 19 Aliso 23, pp. 248–258 ᭧ 2007, Rancho Santa Ana Botanic Garden LARGE TREES, SUPERTREES, AND DIVERSIFICATION OF THE GRASS FAMILY TREVOR R. HODKINSON,1,5 NICOLAS SALAMIN,2 MARK W. CHASE,3 YANIS BOUCHENAK-KHELLADI,1,3 STEPHEN A. RENVOIZE,4 -
1501 Taxonomic Revision of the Genus Psathyrostachys Nevski (Poaceae
AJCS 5(12):1501-1507 (2011) ISSN:1835-2707 Taxonomic revision of the genus Psathyrostachys Nevski (Poaceae: Triticeae) in Turkey Evren Cabi 1*, Musa Do ğan 2, Ersin Karabacak 3 1Atatürk University, Faculty of Science, Department of Biology, 25240, Erzurum, TURKEY 2Middle East Technical University, Faculty of Arts and Sciences, Department of Biological Sciences, 06531, Ankara, TURKEY 3Çanakkale Onsekiz Mart University, Faculty of Arts and Sciences, Department of Biology, 17020, Çanakkale, TURKEY *Corresponding author: [email protected] Abstract In this study, the genus Psathyrostachys Nevski is revised in Turkey. Furthermore multivariate analysis have been carried out in order to understand the delimitation of the taxa of Psathyrostachys. For this reason, 20 quantitative, qualitative and multi-state morphological characters were scored for the accessions representing 10 populations of the genus. The data were subjected to numerical taxonomic analysis. The results showed that the genus is represented by 3 species one of which is new species and the other one is a new record for Turkey. An account of 3 species and 4 subspecies recognized in the genus is given including the genus description, a key for the species as well as the subspecies, species descriptions, flowering times, habitats, altitudes, type citations, distributions, phytogeography and their conservation status. However, three new taxa, namely P. narmanica sp. nov ., P. fragilis subsp. artvinense subsp. nov. and P. daghestanica subsp erzurumica subsp. nov. are described and illustrated for the first time. Keywords: Poaceae, Psathyrostachys , revision, Turkey. Introduction The genus Psathyrostachys Nevski (Poaceae; Triticeae) is a anatomical studies have also been done on certain grass small, well-defined, perennial genus comprising only eight genera (Do ğan, 1988, 1991, 1992, 1997; Cabi and Do ğan, species (Baden 1991). -
Data Standards Version 2.8 July 5
Euro+Med Data Standards Version 2.8. July 5th, 2002 EURO+MED PLANTBASE PREPARATION OF THE INITIAL CHECKLIST: DATA STANDARDS VERSION 2.8 JULY 5TH, 2002 This document replaces Version 2.7, dated May 16th, 2002 Compiled for the Euro+Med PlantBase Editorial Committee by: Euro+Med PlantBase Secretariat, Centre for Plant Diversity and Systematics, School of Plant Sciences, The University of Reading, Whiteknights, Reading RG6 6AS United Kingdom Tel: +44 (0)118 9318160 Fax: +44 (0)118 975 3676 E-mail: [email protected] 1 Euro+Med Data Standards Version 2.8. July 5th, 2002 Modifications made in Version 2.0 (24/11/00) 1. Section 2.4 as been corrected to note that geography should be added for hybrids as well as species and subspecies. 2. Section 3 (Standard Floras) has been modified to reflect the presently accepted list. This may be subject to further modification as the project proceeds. 3. Section 4 (Family Blocks) – genera have been listed where this clarifies the circumscription of blocks. 4. Section 5 (Accented Characters) – now included in the document with examples. 5. Section 6 (Geographical Standard) – Macedonia (Mc) is now listed as Former Yugoslav Republic of Macedonia. Modification made in Version 2.1 (10/01/01) Page 26: Liliaceae in Block 21 has been corrected to Lilaeaceae. Modifications made in Version 2.2 (4/5/01) Geographical Standards. Changes made as discussed at Palermo General meeting (Executive Committee): Treatment of Belgium and Luxembourg as separate areas Shetland not Zetland Moldova not Moldavia Czech Republic -
A Floristic Study of Hamun Lake Basin, South East of Iran
ECOLOGIA BALKANICA 2017, Vol. 9, Issue 1 June 2017 pp. 1-9 A Floristic Study of Hamun Lake Basin, South East of Iran Maryam Keshavarzi1*, Habibollah Ijbari2, Samaneh Mosaferi1,3, Farzaneh Ebrahimi1 1 - Alzahra University, Faculty of Biological Sciences, Plant Sciences Department, Tehran, IRAN 2 - University of Zabol, Faculty of Science, Department of Biology, Zabol, IRAN 3 - Shahid Beheshti University, Faculty of Biological Sciences, Department of Biology, Tehran, IRAN * Corresponding author: [email protected], [email protected] Abstract. Lake Hamun is the largest freshwater resource in Iran with area of about 3820 km2. The present study aims to evaluate the floristic elements of the studied site. Plant samples were gathered from nature, from March to July at the growing season. Life form and chorotype of plants in Lake Hamun basin were investigated. Totally 128 plant species belonging to 80 genera and 30 families were identified. Families as Poaceae, Amaranthaceae and Fabaceae were the most dominant and frequent families. Considering biological types revealed that the most frequent forms were therophytes (61%) and hemicryptophytes (17%). Floristic elements of the area were mainly Irano- touranian mixed with Saharo-Arabian and Sindu-Sudanian types, although multi- and bi- regional elements were also frequent. As the lake has recently become an international conserved area, the complete biological and ecological study of the site is a necessity. Key words: Hamun Lake, Sistan and Baluchestan, Iran. Introduction Basin with area of approximately 310,000 km2 is Iran is a country in the south-west of Asia limited at the East by Iranian highlands, at the with 1.648 million km2 area. -
Historical Review and Prospect of Taxonomy of Tribe Triticeae Dumortier (Poaceae)
Breeding Science 59: 513–518 (2009) Review Historical review and prospect of taxonomy of tribe Triticeae Dumortier (Poaceae) Chi Yen* and Jun Liang Yang Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, Sichuan, The People’s Republic of China The tribe Triticeae is a taxon in the Poaceae that includes several important cereal crops and forage grasses. All its species, including those that are not used for cereals or forage, are potential sources of genes for crop and forage improvement so they all have high economic value. Taxonomic treatments, including those of the Triticeae, are the basis for identification. They are often designed to reflect phylogenetic relationships and provide a guide for germplasm utilization. Traditional taxonomic treatments of the Triticeae were based on comparative morphology and geography. Morphological characters are phenotypes of an organism, resulting from interactions between or among dominant genes and environmental factors. Morphology cannot reflect recessive inheritance. Similar environmental conditions may result in morphological convergence in distantly related taxa and different environmental conditions in morphological divergence of closely related taxa. Con- sequently, traditional morphological taxonomy may result in misclassification. Cytogenetic and/or molecular genomic analysis may reveal such mistakes. On the basis of recent genomic investigations of the Triticeae, we have recognized 30 genera in this tribe. The taxonomic changes and genomic constitution of these genera are presented in this paper. Key Words: Triticeae, genera, genomic constitution, phylogenetic relationships. Introduction Linnaeus (1753) later named them Aegilops ovata and Ae. triuncialis, respectively. These names are, however, al- The tribe Triticeae is a taxon in the Poaceae that includes ways attributed to Linnaeus because, ever since acceptance several important cereal crops and forage grasses. -
Ardabil-Tabriz, Iran, by the Members of Kyoto University Scientific Expedition to the Karakorani and Hindukush in 1955 (Sakamoto and Muramatsu, 1965)
INTERGENERIC HYBRIDISATION BETWEEN EREMOPYRUM ORIENTALE AND HENRARDIA PERSICA, AN EXAMPLE OF POLYPLOID SPECIES FORMATION* SADAO SAKAMOTO National Institute of Genetics, Misima, Japan Received5.iv.71 1. INTRODUCTION THE tribe Triticeae, Gramineae, includes about 14 genera. Among them Henrardia C. E. Hubbard represents a very small genus which contains two annual species, Hn. persica (Boiss.) C. E. Hubbard and Hn. pubescens (Bertol.) C. E. Hubbard (Hubbard, 1946). The chromosome numbers of both have been reported as 2n =14,for the former by Sakamoto and Muramatsu (1965) and for the latter by Bowden (1966). The two representatives have quite a characteristic morphology, different, according to Bor (1960), from other genera of the tribe by the following characters: spikelets 1-2-flowered, awnless, sunk into a jointed fragile spike-axis and closely appressed to it; florets enclosed in collateral glumes; lemmas thin, membranous, 3-5-nerved. Both species are distributed in Turkey (Anatolia) and from there have dispersed eastwards through Armenia and Transcaucasia to Russian Central Asia and southwards to Iraq, Iran, Afghanistan and Baluchistan (Hubbard, bc. cit.). In an attempt to clarify the genetic relationships between this odd looking genus and other genera of the tribe, Hn. persica was crossed as either female or male parent with Aegilops bicornis Jaub. et Spach, Ae. caudata L., Ae. cylindrica Host, Ae. ovata L., Ae. sharonensis Eig, Ae. squarrosa L., Ae umbellulata Zhuk., Agropron tsukushiense (Honda) Ohwi, Ereinopyrum bonaepartis (Spreng.) Nevski, Er. orientate (L.) Jaub. et Spach, Heteranthelium pi1ferum (Banks et Sol.) Hochst, Taeniatherum asperum (Simonkai) Nevski and Triticum boeoticum Boiss. From these crosses intergeneric hybrids were obtained so far only in crosses of Henrardia persica with Eremopyrum orientate. -
Biosystematics of Triticeae Volume I
springer.com Life Sciences : Agriculture Yen, Chi, Yang, Junliang Biosystematics of Triticeae Volume I. Triticum-Aegilops complex Summarizes the biosystematics of Triticeae with comprehensive and updated data Useful tool for world researchers on wheat, barley and other Triticeae species to understand the relationship among species in Triticeae Provides reference for biologists, plant breeders, taxonomists, geneticists, biogeographic researchers, historians, biotechnologists, agriculturalists, and evolutionists This book discusses the natural classification and biosystematics of Triticeae, and presents the most significant findings of comprehensive studies on the Triticeae, an important tribe in the grass family (Poaceae) that includes major crops such as wheat, barley, rye and triticale, as well as various forage crops found in different genera. The five-volume Chinese version of Springer Biosystematics of Triticeae was published in 1998, 2004, 2006, 2011, and 2013, and included 1st ed. 2020, XIX, 265 p. 64 the 30 genera, 2 subgenera, 464 species, 9 subspecies, and 186 varieties of Triticeae identified 1st illus. to date. This completely revised English edition features up-to-date international research and edition the latest advances in the field. The book is divided into five volumes, covering a wide range of disciplines from traditional taxonomy and cytogenetics, to molecular phylogeny. Volume I, Triticum-Aegilops complexfocuses on the taxonomy and generic relationships of Triticum and Printed book Aegilops, discussing the origin of common wheat as a crop. Volume IIhighlights the taxonomy Hardcover and systematics of Secale, Tritiosecale, Pseudosecale, Eremopyrum, Henrardia, Taeniantherum, Printed book Heteranthelium, Crithopsis, and Hordeum. Volume III describes perennial genera and species Hardcover includingKengyilia, Douglasdeweya, Agropyron, Australopyrum, and Anthosachne.