Feline Chronic Gingivostomatitis

Total Page:16

File Type:pdf, Size:1020Kb

Feline Chronic Gingivostomatitis Studies on the aetiopathogenesis of feline chronic gingivostomatitis S.M.J. Dolieslager DVM, MRCVS Submitted in fulfilment of the requirements for the degree of Doctor of Philosophy College of Medicine, Veterinary and Life Sciences University of Glasgow June 2012 © Sanne Maria Johanna Dolieslager, June 2012 ii Abstract Feline chronic gingivostomatitis (FCGS) is an inflammatory disease of the oral cavity that causes severe pain and distress. No specific treatment methods are available and little is known about its aetiology. The aims of this study were:- 1) to identify the bacterial flora, including uncultivable and potentially novel species, in healthy cats and those with FCGS, using 16S rRNA gene sequencing in combination with conventional culture methods; 2) to investigate the viral status of cats with and without FCGS; 3) to assess the immune response by investigating the expression of cytokine and Toll-like receptor (TLR) genes in tissue biopsies from normal cats and those with FCGS; 4) to investigate the histopathological changes in tissue biopsies from normal cats and those with FCGS, 5) to assess putative risk factors for FCGS by the use of a questionnaire- based study. Oral swabs, mucosal biopsies and blood were collected and the location of the oral lesions was recorded. A total of 32 cats with FCGS and 16 normal cats were included in the study. Bacteria were identified from swabs by use of 16S rRNA gene sequencing and by conventional culture methods. Blood samples and swabs were used for diagnosis of infection with feline leukaemia virus (FeLV), feline immunodeficiency virus (FIV), feline herpes virus 1 (FHV-1), feline calicivirus (FCV) and for blood biochemistry and haematology. Gene expression levels for TLR2, TLR3, TLR4, TLR7 and TLR9, and cytokines IL-1β, IL-4, IL-6, IL-10, TNF-α and IFN-γ mRNA were determined using quantitative PCR in biopsy samples from healthy cats and cats with FCGS. Histopathological examination of the tissue biopsies was done using hematoxylin and eosin (H&E) staining. In the healthy group, 16S rRNA gene sequencing demonstrated that the most prevalent bacteria were part of the Proteobacteria and Bacteroidetes phyla, plus a group of uncultured bacteria. The most prevalent species in the healthy group were Xanthomonadaceae bacterium (6.2 % of clones analysed), Capnocytophaga canimorsus (5.4%), Capnocytophaga cynodegmi (4.8%), Bergeyella species (4.5%) and Pasteurella multocida subspecies septica (4.4%). Uncultured bacteria accounted for 29% of the clones analysed. In the FCGS group most of the identified species were part of the phylum Proteobacteria. The most prevalent species in the FCGS group were P. multocida subsp. multocida (14.1%) P. multocida subsp. septica (11.5%), Pseudomonas sp. (7.3%), Tannerella forsythia (6.6%) and Porphyromonas circumdentaria (5.6%). A variety of uncultured bacteria represented 7.7% of all analysed FCGS clones. The culture data showed the most prevalent bacteria in the healthy group were iii P. multocida subsp. septica (9.9%), and uncultured bacteria (30.5%). In the FCGS group the most prevalent isolates were P. multocida subsp septica and P. multocida subsp. multocida (both 9.9%). Uncultured bacteria accounted for 21.7% of all isolates. FCV was detected in 71% of cats with FCGS and in 13.3% of normal cats. FeLV antigen was detected in 33.3% of normal cats but not in any cats with FCGS. FIV antibodies were detected in 3.4% of cats with FCGS and in 33.3% of normal cats. FHV-1 was detected in 6.9% of cats with FCGS, but was not detected any of the normal cats. In the FCGS group a significant increase was seen in the expression of TLR2 and TLR7 genes as well as TNF-α, IFN-γ, IL-1β and IL-6 cytokine genes. The healthy cats and cats with FCGS in the study that were found to harbour T. forsythia and P. circumdentaria showed an increase in the expression of several TLR and cytokine genes when compared to the group of cats in which these bacterial species were absent. The most severely inflamed sites in the oral cavity of cats with FCGS included the tissue lateral to the palatoglossal folds and the maxillary attached gingiva. Histopathological analysis of the tissue from the palatoglossal folds showed two types of infiltrates:- 1) a combination of lymphocytes and plasma cells, most often seen in the milder inflamed tissue samples; 2) a predominantly plasmacytic infiltration, most often seen in the severely inflamed tissue samples. Preliminary data from a questionnaire-based epidemiological study showed that the presence of potential environmental stress factors such as no ability to roam outdoors and the presence of more than one cat in the household is significantly higher in cats with FCGS when compared to normal cats. This study highlights the possibility of a multifactorial aetiology for FCGS in which FCV, specific bacteria and stress factors may play an important role. Although species from the Bacteroidetes phylum appeared to be capable of eliciting an immune response, these were not the most prevalent species in the FCGS group. A shift could be seen in the composition of the bacterial flora when healthy cats and those with FCGS were compared. iv Table of contents Abstract ...................................................................................... ii List of Figures ............................................................................. viii Acknowledgements .......................................................................... x Author’s Declaration ...................................................................... xii List of abbreviations ..................................................................... xiii Chapter 1 General introduction .......................................................... 1 1.1 Preface ............................................................................... 1 1.2 Feline chronic gingivostomatitis .................................................. 2 1.2.1 Definition of FCGS ............................................................. 2 1.2.2 Prevalence ...................................................................... 5 1.3 Treatment and management of FCGS ............................................ 6 1.3.1 Preventive measures .......................................................... 6 1.3.2 Symptomatic treatment ....................................................... 7 1.4 Bacteriology ......................................................................... 11 1.4.1 The healthy bacterial oral flora in cats .................................... 11 1.4.2 The oral flora in the inflamed feline oral cavity ......................... 13 1.4.3 Bartonella henselae .......................................................... 16 1.5 Feline viruses and FCGS ........................................................... 18 1.5.1 Feline leukaemia virus ....................................................... 18 1.5.2 Feline immunodeficiency virus .............................................. 19 1.5.3 Feline calicivirus .............................................................. 20 1.5.4 Feline herpes virus 1 ......................................................... 21 1.6 The immune response ............................................................. 23 1.6.1 Defence mechanism in the oral cavity ..................................... 23 1.6.2 Toll-like receptors ............................................................ 24 1.6.3 Cytokines ....................................................................... 28 1.7 Risk factors in FCGS ................................................................ 31 1.7.1 Age .............................................................................. 31 1.7.2 Breed ........................................................................... 31 1.7.3 Sex .............................................................................. 31 1.8 Aims .................................................................................. 32 Chapter 2 Materials and methods ....................................................... 33 2.1 Ethical approval .................................................................... 33 2.2 Sample collection .................................................................. 33 2.3 Sample processing ................................................................. 34 2.4 Statistical analysis ................................................................. 34 2.5 List of suppliers .................................................................... 37 2.6 General stock solutions and buffers ............................................. 38 Chapter 3 Clinical signs and laboratory diagnostic evaluation ...................... 39 3.1 Introduction ......................................................................... 39 3.2 Materials and methods ............................................................ 40 3.2.1 History and clinical signs ..................................................... 40 3.2.2 Oral examination .............................................................. 40 3.2.3 Blood biochemistry and haematology ...................................... 42 3.2.4 Statistics........................................................................ 42 3.3 Results ............................................................................... 44 3.3.1 Signalment ..................................................................... 44 3.3.2 Vaccination status ............................................................ 44 3.3.3 Clinical signs
Recommended publications
  • Charakterisierung Haemophiler Bakterienisolate Der Gattungen Histophilus Und Haemophilus Aus Wiederkäuern
    Zurich Open Repository and Archive University of Zurich Main Library Strickhofstrasse 39 CH-8057 Zurich www.zora.uzh.ch Year: 2016 Charakterisierung haemophiler Bakterienisolate der Gattungen Histophilus und Haemophilus aus Wiederkäuern Sutter, Gabriella Abstract: Haemophile Bakterien der Gattungen Haemophilus und Histophilus sind bei Nutztieren weit verbreitet. Beim Wiederkäuer gilt Histophilus somni (syn. Haemophilus somnus) unter anderem als Verursacher der ISTME/TEME. Gleichzeitig werden diese Bakterien oft als asymptomatische Besiedler von Schleimhäuten des Genital- und Respirationstrakts gefunden. In der vorliegenden Arbeit wurden 194 Histophilus/Haemophilus-Isolate aus der Stammsammlung der Vetsuisse-Fakultät Zürich (1974 bis 1998) untersucht. Als Methoden wurden Kultur, 16S rDNA Amplifizierung und Sequenzierung sowie Ribotypisierung verwendet. Kulturell typisiert werden konnten 13 Isolate, die alle nicht hämolysierend, Oxidase-positiv, Katalase-negativ und V- und X-Faktor unabhängig waren. Aufgrund ihrer Koloniemor- phologie wurden die Isolate der M-, S- und R-Form zugeordnet. Die Analyse der 16S rDNA aus 28 haemophilen Isolaten mit Datenbankeinträgen ergab für alle Isolate eine höchste Übereinstimmung mit 16S rDNA-Sequenzen von Histophilus somni-Isolaten. Aufgrund der unterschiedlichen Übereinstim- mungsraten wurde eine Unterteilung in drei 16S rDNA-Gruppen vorgenommen. Interessanterweise wiesen 13 der 28 untersuchten Isolate (46,4%) eine Übereinstimmung von <95% mit bekannten Histophilus somni-Isolaten auf. Ob somit eine neue Spezies-Bestimmung zu erfolgen hat, wird Thema künftiger Untersuchungen sein. Alle untersuchten Isolate wiesen eine grosse genetische Vielfalt auf, wie sie auch in der Literatur beschrieben ist. Haemophilic bacteria of the genera Haemophilus and Histophilus are found worldwide in a wide range of animals. In ruminants, Histophilus somni (syn. Haemophilus som- nus) is for example known as causative agent of ISTME/TEME.
    [Show full text]
  • High-Quality Draft Genome Sequence and Description of Haemophilus Massiliensis Sp
    Lo et al. Standards in Genomic Sciences (2016) 11:31 DOI 10.1186/s40793-016-0150-1 EXTENDED GENOME REPORT Open Access High-quality draft genome sequence and description of Haemophilus massiliensis sp. nov. Cheikh Ibrahima Lo1,2, Senthil Alias Sankar1, Bécaye Fall3, Bissoume Sambe-Ba3, Silman Diawara3, Mamadou Wague Gueye3, Oleg Mediannikov1,2, Caroline Blanc-Tailleur1, Boubacar Wade3, Didier Raoult1,2,4, Pierre-Edouard Fournier1 and Florence Fenollar1,2* Abstract Strain FF7T was isolated from the peritoneal fluid of a 44-year-old woman who suffered from pelvic peritonitis. This strain exhibited a 16S rRNA sequence similarity of 94.8 % 16S rRNA sequence identity with Haemophilus parasuis,the phylogenetically closest species with a name with standing in nomenclature and a poor MALDI-TOF MS score (1.32 to 1.56) that does not allow any reliable identification. Using a polyphasic study made of phenotypic and genomic analyses, strain FF7T was a Gram-negative, facultatively anaerobic rod and member of the family Pasteurellaceae. It exhibited a genome of 2,442,548 bp long genome (one chromosome but no plasmid) contains 2,319 protein-coding and 67 RNA genes, including 6 rRNA operons. On the basis of these data, we propose the creation of Haemophilus massiliensis sp.nov.withstrainFF7T (= CSUR P859 = DSM 28247) as the type strain. Keywords: Haemophilus massiliensis, Genome, Taxono-genomics, Culturomics Introduction systematically compared to the phylogenetically-closest The genus Haemophilus (Winslow et al. 1917) was de- species with a name with standing in nomenclature [8, 9]. scribed in 1917 [1] and currently meningitis, bacteremia, The strain FF7T was isolated from the peritoneal fluid sinusitis, and/or pneumonia [2].
    [Show full text]
  • Phylogenomic and Molecular Demarcation of the Core Members of the Polyphyletic Pasteurellaceae Genera Actinobacillus, Haemophilus,Andpasteurella
    Hindawi Publishing Corporation International Journal of Genomics Volume 2015, Article ID 198560, 15 pages http://dx.doi.org/10.1155/2015/198560 Research Article Phylogenomic and Molecular Demarcation of the Core Members of the Polyphyletic Pasteurellaceae Genera Actinobacillus, Haemophilus,andPasteurella Sohail Naushad, Mobolaji Adeolu, Nisha Goel, Bijendra Khadka, Aqeel Al-Dahwi, and Radhey S. Gupta Department of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, ON, Canada L8N 3Z5 Correspondence should be addressed to Radhey S. Gupta; [email protected] Received 5 November 2014; Revised 19 January 2015; Accepted 26 January 2015 Academic Editor: John Parkinson Copyright © 2015 Sohail Naushad et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The genera Actinobacillus, Haemophilus, and Pasteurella exhibit extensive polyphyletic branching in phylogenetic trees and do not represent coherent clusters of species. In this study, we have utilized molecular signatures identified through comparative genomic analyses in conjunction with genome based and multilocus sequence based phylogenetic analyses to clarify the phylogenetic and taxonomic boundary of these genera. We have identified large clusters of Actinobacillus, Haemophilus, and Pasteurella species which represent the “sensu stricto” members of these genera. We have identified 3, 7, and 6 conserved signature indels (CSIs), which are specifically shared by sensu stricto members of Actinobacillus, Haemophilus, and Pasteurella, respectively. We have also identified two different sets of CSIs that are unique characteristics of the pathogen containing genera Aggregatibacter and Mannheimia, respectively. It is now possible to demarcate the genera Actinobacillus sensu stricto, Haemophilus sensu stricto, and Pasteurella sensu stricto on the basis of discrete molecular signatures.
    [Show full text]
  • Discrimination of Members of the Family Pasteurezlaceae Based On
    INTERNATIONALJOURNAL OF SYSTEMATICBACTERIOLOGY, July 1997, p. 698-708 Vol. 47, No. 3 0020-7713/97/$04.00+ 0 Copyright 0 1997, International Union of Microbiological Societies Discrimination of Members of the Family PasteureZlaceae Based on Polyamine Patterns HANS-JURGEN BUSSE,'" SEBASTIAN BUN=,* ANDREAS HENSEL,l AND WERNER LUBITZ' Institut fur Mikrobiologie und Genetik, Universitat Wien, A-1030 Vienna,' and Institut fur Medizinische Chemie, Veterinannedizinische Universitat Wien,A-121 0 Vienna, Austria In a study of the classification of members of the family Pasteurelluceae, the polyamine patterns of 101 strains were analyzed. These strains included the type strains of species belonging to the genera Actinobacillus, Haemophilus, and Pasteurellu and additional strains of selected species, as well as numerous unnamed strains. Members of the genus Actinobacillus sensu stricto were characterized by the presence of 1,3-diaminopropane as the predominant compound. In the majority of the species of the genus Haemophilus sensu stricto 1,3- diaminopropane was also the major compound in the polyamine pattern. In contrast, Haemophilus intermedius subsp. gazogenes and Haemophilus parainjluenzae were characterized by high levels of 1,3-diaminopropane, cadaverine, and putrescine. These results confirmed the findings of Dewhirst et al. (F. E. Dewhirst, B. J. Paster, I. Olsen, and G. J. Fraser, Zentralbl. Bakteriol. Parasitenkd. Infektionskr. Hyg. Abt. 1Orig. 279:35-44, 1993), who demonstrated that H. parainjluenzae is phylogenetically only distantly related to the type species of the genus Haemophilus, Haemophilus injluenzae. The phylogenetic diversity of the genus Pasteurellu sensu stricto determined by Dewhirst et al. was also reflected to some extent by different polyamine patterns.
    [Show full text]
  • Thèse De Doctorat En Co-Tutelle
    AIX-MARSEILLE UNIVERSITE UNIVERSITE CHEIKH ANTA DIOP FACULTE DE MÉDECINE DE MARSEILLE ECOLE DOCTORALE DES SCIENCES DE LA VIE, ECOLE DOCTORALE DES SCIENCES DE LA VIE DE LA SANTE ET DE L'ENVIRONNEMENT ET DE LA SANTE FACULTE DES SCIENCES ET TECHNIQUES THÈSE DE DOCTORAT EN CO-TUTELLE Spécialités: Maladies Transmissibles et Pathologies Tropicales (AMU) / Parasitologie (UCAD) Présentée par Monsieur Cheikh Ibrahima LO Né le 10 mai 1985 à Keur Khar Kane, Gossas (Sénégal) REPERTOIRE DES BACTERIES IDENTIFIEES PAR MALDI-TOF EN AFRIQUE DE L’OUEST Soutenue publiquement A LA FACULTÉ DE MÉDECINE DE MARSEILLE Le 7 Décembre 2015 Devant le Jury composé de: Président : M. Pierre Edouard Fournier Professeur, AMU/France Membre du Jury : M. Bhen Sikina Toguebaye Professeur, UCAD/Sénégal Rapporteur : Mme. Marie Kempf Docteur CHU-Angers/France Rapporteur : Mme. Amy Gassama Sow Professeur UCAD/Sénégal Directeur de Thèse: Mme Florence Fenollar, Professeur, AMU/France Co-directeur de Thèse: M. Ngor Faye Maître de Conférences, UCAD/Sénégal LABORATOIRE D’ACCUEIL Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE), UM63, CNRS 7278, IRD 198, Inserm 1095; 13005 Marseille, France. ϭ Remerciements Tout d’abord, je remercie Madame Florence FENOLLAR, Professeur à Aix-Marseille Université. En tant que directrice principale de ma thèse, elle m'a guidé dans mon travail et m'a aidé à trouver des solutions pour avancer. Elle a consacré un temps énorme pour moi et n’a ménagé aucun effort pour l’atteinte des objectifs de cette thèse. J’ai appris le franc parlé, la rigueur, l’amour de la recherche et tant d’autres qualités qui me serviront certes à l’avenir.
    [Show full text]
  • Downloaded 10/02/21 03:07 PM UTC Acta Veterinaria Hungarica 68 (2020) 2, 140–146 141
    Detection of Frederiksenia sp. isolated from a cat with nephritis – Short communication BARBARA UJVARI 1, LEVENTE SZEREDI2 and TIBOR MAGYAR1p Acta Veterinaria Hungarica 1 Institute for Veterinary Medical Research, Centre for Agricultural Research, P.O. Box 18, Budapest, 68 (2020) 2, 140–146 H-1581 Hungary 2 fi DOI: Veterinary Diagnostic Directorate, National Food Chain Safety Of ce, Budapest, Hungary 10.1556/004.2020.00021 © 2020 The Author(s) Received: January 13, 2020 • Accepted: March 24, 2020 Published online: September 4, 2020 ABSTRACT ORIGINAL ARTICLE In this paper we report the phenotypic and partial genetic characterisation of a novel bacterium strain isolated from a cat with severe nephritis. Multilocus sequence analysis was performed on the 16S rRNA and three housekeeping (recN, rpoB, infB) gene sequences obtained by PCR. In accordance with the results of phenotypic tests, the phylogenetic analyses confirmed the relatedness of the new strain (6036) to the family Pasteurellaceae. On the phylogenetic trees, strain 6036 appeared in a separate branch, closest to that of the type species (Frederiksenia canicola) of the genus Frederiksenia. These two bacteria shared 95.14 and 76.88% identity in their partial 16S rRNA and recN gene sequences, respectively. The rpoB- and infB-based phylogenetic analyses indicated that strain 6036 is most closely related to Bibersteinia trehalosi (with 90.58% identity) and [Haemophilus] felis ATCC 49733 (89.50% identity), respectively. The predicted genome identity values, based on the recN gene sequences, suggested that strain 6036 can be classified into the genus Frederiksenia as a novel species. A PCR method, specificto strain 6036, was developed to allow its rapid and accurate identification and differentiation from F.
    [Show full text]
  • Science Manuscript Template
    bioRxiv preprint doi: https://doi.org/10.1101/2021.08.28.458008; this version posted August 29, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Title: Dual avatars of E. coli grxB encoded Glutaredoxin 2 perform ascorbate recycling and ion 2 channel activities 3 4 Authors 5 Sreeshma Nellootil Sreekumar1,2†, Bhaba Krishna Das1†, Rahul Raina1†, Neethu 6 Puthumadathil3, Sonakshi Udinia4, Amit Kumar1, Sibasis Sahoo1, Pooja Ravichandran1, 7 Suman Kumar5, Pratima Ray2, Dhiraj Kumar4, Anmol Chandele5, Kozhinjampara R. 8 Mahendran3, Arulandu Arockiasamy1* 9 10 11 Affiliations 12 1 Membrane Protein Biology Group, International Centre for Genetic Engineering and 13 Biotechnology, Aruna Asaf Ali Marg, New Delhi 110067. India. 14 15 2 Department of Biotechnology, Jamia Hamdard University, New Delhi 110062. India. 16 17 3Membrane Biology Laboratory, Interdisciplinary Research Program, Rajiv Gandhi Centre 18 for Biotechnology, Thiruvananthapuram 695014, India. 19 20 4 Cellular Immunology Group, International Centre for Genetic Engineering and 21 Biotechnology, Aruna Asaf Ali Marg, New Delhi 110067. India. 22 5 23 ICGEB-Emory Vaccine Centre, International Centre for Genetic Engineering and 24 Biotechnology, Aruna Asaf Ali Marg, New Delhi 110067. India. 25 26 †these authors contributed equally to this work 27 *Correspondence should be addressed to [email protected] 28 29 Correspondence: 30 Arockiasamy Arulandu 31 Membrane Protein Biology Group, 32 International Centre for Genetic Engineering and Biotechnology, 33 Aruna Asaf Ali Marg, 34 New Delhi-110067.
    [Show full text]
  • Pathogenicity Classification of Bacteria Status September 2017 (CGM/170929-03)
    Classification of Organisms: Pathogenicity classification of bacteria Status September 2017 (CGM/170929-03) COGEM advice CGM/170929-03 Pathogenicity classification of bacteria COGEM advice CGM/170929-03 Dutch Regulations Genetically Modified Organisms In the Decree on Genetically Modified Organisms (GMO Decree) and its accompanying more detailed Regulations (GMO Regulations) genetically modified micro-organisms are grouped in four pathogenicity classes, ranging from the lowest pathogenicity Class 1 to the highest Class 4.1 The pathogenicity classifications are used to determine the containment level for working in laboratories with GMOs. A micro-organism of Class 1 should at least comply with one of the following conditions: a) the micro-organism does not belong to a species of which representatives are known to be pathogenic for humans, animals or plants, b) the micro-organism has a long history of safe use under conditions without specific containment measures, c) the micro-organism belongs to a species that includes representatives of class 2, 3 or 4, but the particular strain does not contain genetic material that is responsible for the virulence, d) the micro-organism has been shown to be non-virulent through adequate tests. A micro-organism is grouped in Class 2 when it can cause a disease in humans or animals whereby it is unlikely to spread within the population while an effective prophylaxis, treatment or control strategy exists, as well as an organism that can cause a disease in plants. A micro-organism is grouped in Class 3 when it can cause a serious disease in humans or animals whereby it is likely to spread within the population while an effective prophylaxis, treatment or control strategy exists.
    [Show full text]
  • C G M 2 0 1 8 [0 4 on D Er Z O E K S R a Pp O
    Update of the bacterial the of bacterial Update intaxonomy the classification lists of COGEM CGM 2018 - 04 ONDERZOEKSRAPPORT report Update of the bacterial taxonomy in the classification lists of COGEM July 2018 COGEM Report CGM 2018-04 Patrick L.J. RÜDELSHEIM & Pascale VAN ROOIJ PERSEUS BVBA Ordering information COGEM report No CGM 2018-04 E-mail: [email protected] Phone: +31-30-274 2777 Postal address: Netherlands Commission on Genetic Modification (COGEM), P.O. Box 578, 3720 AN Bilthoven, The Netherlands Internet Download as pdf-file: http://www.cogem.net → publications → research reports When ordering this report (free of charge), please mention title and number. Advisory Committee The authors gratefully acknowledge the members of the Advisory Committee for the valuable discussions and patience. Chair: Prof. dr. J.P.M. van Putten (Chair of the Medical Veterinary subcommittee of COGEM, Utrecht University) Members: Prof. dr. J.E. Degener (Member of the Medical Veterinary subcommittee of COGEM, University Medical Centre Groningen) Prof. dr. ir. J.D. van Elsas (Member of the Agriculture subcommittee of COGEM, University of Groningen) Dr. Lisette van der Knaap (COGEM-secretariat) Astrid Schulting (COGEM-secretariat) Disclaimer This report was commissioned by COGEM. The contents of this publication are the sole responsibility of the authors and may in no way be taken to represent the views of COGEM. Dit rapport is samengesteld in opdracht van de COGEM. De meningen die in het rapport worden weergegeven, zijn die van de auteurs en weerspiegelen niet noodzakelijkerwijs de mening van de COGEM. 2 | 24 Foreword COGEM advises the Dutch government on classifications of bacteria, and publishes listings of pathogenic and non-pathogenic bacteria that are updated regularly.
    [Show full text]
  • Microbial Identification Databases for Biolog Systems
    Microbial Identification Databases for Biolog Systems Biolog’s powerful carbon source utilization technology accurately identifies environmental and pathogenic microorganisms by producing a characteristic pattern or “metabolic fingerprint” from discrete test reactions performed within a 96 well microplate. Culture suspensions are tested with a panel of pre-selected carbon sources and compared against 2700+ identification profiles of environmental and fastidious organisms of interest in diverse fields of microbiology. Five databases are available for a broad spectrum of aerobic and anaerobic bacteria, yeasts and filamentous fungi. GE NIII GRAM -NEGATIVE AEROBIC BACTERIA (626 taxa) Achromobacter cholinophagum Advenella incenata Burkholderia caledonica Achromobacter denitrificans/ruhlandii Aeromonas allosaccharophila Burkholderia caribensis/anthina Achromobacter insolitus Aeromonas bestiarum Burkholderia caryophylli Achromobacter piechaudii Aeromonas caviae Burkholderia cenocepacia Achromobacter ruhlandii/denitrificans Aeromonas encheleia Burkholderia cepacia/ambifaria Achromobacter spanius Aeromonas enteropelogenes Burkholderia contaminans Achromobacter xylosoxidans ss xylosoxidans Aeromonas eucrenophila Burkholderia dolosa Acidovorax avenae ss avenae Aeromonas hydrophila ss anaerogenes Burkholderia fungorum Acidovorax cattleyae Aeromonas hydrophila ss hydrophila Burkholderia gladioli Acidovorax citrulli Aeromonas ichthiosmia Burkholderia glathei Acidovorax delafieldii Aeromonas jandaei Burkholderia glumae Acidovorax facilis (26C) Aeromonas
    [Show full text]
  • Frederiksenia Canicola Gen. Nov., Sp. Nov. Isolated from Dogs and Human Dog-Bite Wounds
    View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by RERO DOC Digital Library Antonie van Leeuwenhoek (2014) 105:731–741 DOI 10.1007/s10482-014-0129-0 ORIGINAL PAPER Frederiksenia canicola gen. nov., sp. nov. isolated from dogs and human dog-bite wounds Bozena_ M. Korczak • Magne Bisgaard • Henrik Christensen • Peter Kuhnert Received: 19 November 2013 / Accepted: 28 January 2014 / Published online: 8 February 2014 Ó Springer International Publishing Switzerland 2014 Abstract Polyphasic analysis was done on 24 strains branch with intraspecies sequence similarity of at least of Bisgaard taxon 16 from five European countries and 99.1, 90.8, 96.8 and 97.2 %, respectively. Taxon 16 mainly isolated from dogs and human dog-bite showed closest genetic relationship with Bibersteinia wounds. The isolates represented a phenotypically trehalosi as to the 16S rRNA gene (95.9 %), the rpoB and genetically homogenous group within the family (89.8 %) and the recN (74.4 %), and with Actinoba- Pasteurellaceae. Their phenotypic profile was similar cillus lignieresii for infB (84.9 %). Predicted genome to members of the genus Pasteurella. Matrix-assisted similarity values based on the recN gene sequences laser desorption/ionization time-of-flight mass spec- between taxon 16 isolates and the type strains of trometry clearly identified taxon 16 and separated it known genera of Pasteurellaceae were below the from all other genera of Pasteurellaceae showing a genus level. Major whole cell fatty acids for the strain T characteristic peak combination. Taxon 16 can be HPA 21 are C14:0,C16:0,C18:0 and C16:1 x7c/C15:0 iso further separated and identified by a RecN protein 2OH.
    [Show full text]
  • Non-Beta-Lactamase-Mediated Beta-Lactam Resistance in Haemophilus Influenzae Mechanisms, Epidemiology and Susceptibility Testing
    Department of Medical Biology, Faculty of Health Sciences Department of Microbiology, Vestfold Hospital Trust Non-beta-lactamase-mediated beta-lactam resistance in Haemophilus influenzae Mechanisms, epidemiology and susceptibility testing — Dagfinn Skaare A dissertation for the degree of Philosophiae Doctor – January 2016 Non-beta-lactamase-mediated beta-lactam resistance in Haemophilus influenzae Mechanisms, epidemiology and susceptibility testing DAGFINN SKAARE 2016 Department of Medical Biology, Faculty of Health Sciences University of Tromsø - The Arctic University of Norway Tromsø, Norway Department of Microbiology, Vestfold Hospital Trust Tønsberg, Norway 1 2 In the precious memories of my father, mother and brother 3 4 The time may come when penicillin can be bought by anyone in the shops. Then there is the danger that the ignorant man may easily underdose himself and by exposing his microbes to non-lethal quantities of the drug make them resistant. Alexander Fleming in his Nobel lecture, December 1945 [133] 5 6 TABLE OF CONTENTS ACKNOWLEDGEMENTS ....................................................................................... 11 SUMMARY ................................................................................................................. 15 ABBREVIATIONS ..................................................................................................... 19 PREFACE .................................................................................................................... 23 PART I. BACKGROUND 1 HISTORY..............................................................................................................
    [Show full text]