Coral Reef Adventure Teacher Workshop
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Characterization of Translationally Controlled Tumour Protein from the Sea Anemone Anemonia Viridis and Transcriptome Wide Identification of Cnidarian Homologues
G C A T T A C G G C A T genes Article Characterization of Translationally Controlled Tumour Protein from the Sea Anemone Anemonia viridis and Transcriptome Wide Identification of Cnidarian Homologues Aldo Nicosia 1,* ID , Carmelo Bennici 1, Girolama Biondo 1, Salvatore Costa 2 ID , Marilena Di Natale 1, Tiziana Masullo 1, Calogera Monastero 1, Maria Antonietta Ragusa 2, Marcello Tagliavia 1 and Angela Cuttitta 1,* 1 National Research Council-Institute for Marine and Coastal Environment (IAMC-CNR), Laboratory of Molecular Ecology and Biotechnology, Detached Unit of Capo Granitola, Via del mare, 91021 Torretta Granitola (TP), Sicily, Italy; [email protected] (C.B.); [email protected] (G.B.); [email protected] (M.D.N.); [email protected] (T.M.); [email protected] (C.M.); [email protected] (M.T.) 2 Department of Biological, Chemical and Pharmaceutical Sciences and Technologies, University of Palermo, Viale delle Scienze, Ed. 16, 90128 Palermo, Sicily, Italy; [email protected] (S.C.); [email protected] (M.A.R.) * Correspondence: [email protected] (A.N.); [email protected] (A.C.); Tel.: +39-0924-40600 (A.N. & A.C.) Received: 10 November 2017; Accepted: 5 January 2018; Published: 11 January 2018 Abstract: Gene family encoding translationally controlled tumour protein (TCTP) is defined as highly conserved among organisms; however, there is limited knowledge of non-bilateria. In this study, the first TCTP homologue from anthozoan was characterised in the Mediterranean Sea anemone, Anemonia viridis. The release of the genome sequence of Acropora digitifera, Exaiptasia pallida, Nematostella vectensis and Hydra vulgaris enabled a comprehensive study of the molecular evolution of TCTP family among cnidarians. -
Coelenterata: Anthozoa), with Diagnoses of New Taxa
PROC. BIOL. SOC. WASH. 94(3), 1981, pp. 902-947 KEY TO THE GENERA OF OCTOCORALLIA EXCLUSIVE OF PENNATULACEA (COELENTERATA: ANTHOZOA), WITH DIAGNOSES OF NEW TAXA Frederick M. Bayer Abstract.—A serial key to the genera of Octocorallia exclusive of the Pennatulacea is presented. New taxa introduced are Olindagorgia, new genus for Pseudopterogorgia marcgravii Bayer; Nicaule, new genus for N. crucifera, new species; and Lytreia, new genus for Thesea plana Deich- mann. Ideogorgia is proposed as a replacement ñame for Dendrogorgia Simpson, 1910, not Duchassaing, 1870, and Helicogorgia for Hicksonella Simpson, December 1910, not Nutting, May 1910. A revised classification is provided. Introduction The key presented here was an essential outgrowth of work on a general revisión of the octocoral fauna of the western part of the Atlantic Ocean. The far-reaching zoogeographical affinities of this fauna made it impossible in the course of this study to ignore genera from any part of the world, and it soon became clear that many of them require redefinition according to modern taxonomic standards. Therefore, the type-species of as many genera as possible have been examined, often on the basis of original type material, and a fully illustrated generic revisión is in course of preparation as an essential first stage in the redescription of western Atlantic species. The key prepared to accompany this generic review has now reached a stage that would benefit from a broader and more objective testing under practical conditions than is possible in one laboratory. For this reason, and in order to make the results of this long-term study available, even in provisional form, not only to specialists but also to the growing number of ecologists, biochemists, and physiologists interested in octocorals, the key is now pre- sented in condensed form with minimal illustration. -
Long-Term Recruitment of Soft-Corals (Octocorallia: Alcyonacea) on Artificial Substrata at Eilat (Red Sea)
MARINE ECOLOGY - PROGRESS SERIES Vol. 38: 161-167, 1987 Published June 18 Mar. Ecol. Prog. Ser. Long-term recruitment of soft-corals (Octocorallia: Alcyonacea) on artificial substrata at Eilat (Red Sea) Y.Benayahu & Y.Loya Department of Zoology. The George S. Wise Center for Life Sciences, Tel Aviv University, Tel Aviv 69978. Israel ABSTRACT: Recruitment of soft corals (Octocorallia: Alcyonacea) on concrete plates was studied in the reefs of the Nature Reserve of Eilat at depths of 17 to 29 m over 12 yr. Xenia macrospiculata was the pioneering species, appealing on the vast majority of the plates before any other spat. This species remained the most conspicuous inhabitant of the substrata throughout the whole study. Approximately 10 % of the plates were very extensively colonized by X. rnacrospiculata, resembling the percentage of living coverage by the species in the surrounding reef, thus suggesting that during the study X. rnacrospiculata populations reached their maximal potential to capture the newly available substrata. The successive appearance of an additional 11 soft coral species was recorded. The species composition of the recruits and their abundance corresponded with the soft coral community in the natural reef, indicahng that the estabhshed spat were progeny of the local populations. Soft coral recruits utilized the edges and lower surfaces of the plates most successfully, rather than the exposed upper surfaces. Such preferential settling of alcyonaceans allows the spat to escape from unfavourable conditions and maintains their high survival in the established community. INTRODUCTION determine the role played by alcyonaceans in the course of reef colonization and in the reef's space Studies on processes and dynamics of reef benthic allocation. -
Preliminary Report on the Octocorals (Cnidaria: Anthozoa: Octocorallia) from the Ogasawara Islands
国立科博専報,(52), pp. 65–94 , 2018 年 3 月 28 日 Mem. Natl. Mus. Nat. Sci., Tokyo, (52), pp. 65–94, March 28, 2018 Preliminary Report on the Octocorals (Cnidaria: Anthozoa: Octocorallia) from the Ogasawara Islands Yukimitsu Imahara1* and Hiroshi Namikawa2 1Wakayama Laboratory, Biological Institute on Kuroshio, 300–11 Kire, Wakayama, Wakayama 640–0351, Japan *E-mail: [email protected] 2Showa Memorial Institute, National Museum of Nature and Science, 4–1–1 Amakubo, Tsukuba, Ibaraki 305–0005, Japan Abstract. Approximately 400 octocoral specimens were collected from the Ogasawara Islands by SCUBA diving during 2013–2016 and by dredging surveys by the R/V Koyo of the Tokyo Met- ropolitan Ogasawara Fisheries Center in 2014 as part of the project “Biological Properties of Bio- diversity Hotspots in Japan” at the National Museum of Nature and Science. Here we report on 52 lots of these octocoral specimens that have been identified to 42 species thus far. The specimens include seven species of three genera in two families of Stolonifera, 25 species of ten genera in two families of Alcyoniina, one species of Scleraxonia, and nine species of four genera in three families of Pennatulacea. Among them, three species of Stolonifera: Clavularia cf. durum Hick- son, C. cf. margaritiferae Thomson & Henderson and C. cf. repens Thomson & Henderson, and five species of Alcyoniina: Lobophytum variatum Tixier-Durivault, L. cf. mirabile Tixier- Durivault, Lohowia koosi Alderslade, Sarcophyton cf. boletiforme Tixier-Durivault and Sinularia linnei Ofwegen, are new to Japan. In particular, Lohowia koosi is the first discovery since the orig- inal description from the east coast of Australia. -
Checklist of Fish and Invertebrates Listed in the CITES Appendices
JOINTS NATURE \=^ CONSERVATION COMMITTEE Checklist of fish and mvertebrates Usted in the CITES appendices JNCC REPORT (SSN0963-«OStl JOINT NATURE CONSERVATION COMMITTEE Report distribution Report Number: No. 238 Contract Number/JNCC project number: F7 1-12-332 Date received: 9 June 1995 Report tide: Checklist of fish and invertebrates listed in the CITES appendices Contract tide: Revised Checklists of CITES species database Contractor: World Conservation Monitoring Centre 219 Huntingdon Road, Cambridge, CB3 ODL Comments: A further fish and invertebrate edition in the Checklist series begun by NCC in 1979, revised and brought up to date with current CITES listings Restrictions: Distribution: JNCC report collection 2 copies Nature Conservancy Council for England, HQ, Library 1 copy Scottish Natural Heritage, HQ, Library 1 copy Countryside Council for Wales, HQ, Library 1 copy A T Smail, Copyright Libraries Agent, 100 Euston Road, London, NWl 2HQ 5 copies British Library, Legal Deposit Office, Boston Spa, Wetherby, West Yorkshire, LS23 7BQ 1 copy Chadwick-Healey Ltd, Cambridge Place, Cambridge, CB2 INR 1 copy BIOSIS UK, Garforth House, 54 Michlegate, York, YOl ILF 1 copy CITES Management and Scientific Authorities of EC Member States total 30 copies CITES Authorities, UK Dependencies total 13 copies CITES Secretariat 5 copies CITES Animals Committee chairman 1 copy European Commission DG Xl/D/2 1 copy World Conservation Monitoring Centre 20 copies TRAFFIC International 5 copies Animal Quarantine Station, Heathrow 1 copy Department of the Environment (GWD) 5 copies Foreign & Commonwealth Office (ESED) 1 copy HM Customs & Excise 3 copies M Bradley Taylor (ACPO) 1 copy ^\(\\ Joint Nature Conservation Committee Report No. -
Back to Nature Natural Reef Aquarium Methodology by Mike Paletta (Aquarium USA 2000 Annual)
Back To Nature Natural Reef Aquarium Methodology by Mike Paletta (Aquarium USA 2000 annual) The reef hobby, that part of the aquarium hobby that has arguably experienced the most change, is ironically also an example of the axiom that the more things change the more they remain the same. During the past 10 years we have seen almost constant change in reefkeeping practices, and, in many instances, complete reversal of opinions as to which techniques or practices are the best. We have gone from not feeding our corals directly to feeding them, from using some type of substrate to none at all and then back again, and, finally, we have run the full gamut from using a lot of technology to little or none. It is this last change, commonly referred to as the "back to nature" or natural approach, that many hobbyists are now choosing to follow. Advocates of natural methodologies have been around since the 1960s, when the first "reefkeeper," Lee Chin Eng, initiated many of the concepts and techniques that are fundamental to successful reefkeeping. Mr. Eng lived near the ocean in Indonesia and used many of the materials that were readily available to him from this source. "Living stones," which have come to be known as live rock, were used in his systems as the main source of biological filtration. He also used natural seawater and changed it on a regular basis. His tanks were situated so they would receive several hours of direct sunlight each day, which kept them well illuminated. The only technology he used was a small air pump, which bubbled slowly into the tank. -
AC Spring 2006
13 American Currents Vol. 32, No. 2 System Design for the Ultimate Native Fish Aquarium Todd D. Crail 2348 Sherwood, Toledo, OH 43614, [email protected] Photos by the author. have a problem. I live in the central-east portion of that subterminal-mouthed species such as greenside darter North America where we share space with part of the (Etheostoma blennioides) and banded darter (E. zonale) are most diverse temperate fish fauna in the world. I know difficult to keep in robust shape in the presence of other fishes. I where they are and I spend most of my free time looking In addition, I was continually servicing their aquariums to at them in the field. I’ve also discovered how easily many of account for the excess nutrients and nitrogen that came from these beautiful animals can be kept in aquaria, where I further the heavier feedings needed to maintain even mediocre enjoy their beauty and learn more about their equally diverse robustness. (Since other fishkeepers told me success with habits, life histories and inter-species interactions. suckers in aquaria could be described as “dismal” at best, I How is this a problem? It’s a problem because I have only overlooked this family despite my fanatical interest in them.) so many aquariums and a finite amount of space to devote to In 1999, I caught the reefkeeping bug and left native these fishes! fishes to explore the ecology of the reef tank promoted by Ron In the following paragraphs, I share my experiences and Shimek, Eric Borneman and Rob Toonen on the reefkeeping the lessons I’ve learned solving this “problem,” explain the e-mail lists and, eventually, in hobbyist books. -
Aquacultue OPEN COURSE: NOTES PART 1
OPEN COURSE AQ5 D01 ORNAMENTAL FISH CULTURE GENERAL INTRODUCTION An aquarium is a marvelous piece of nature in an enclosed space, gathering the attraction of every human being. It is an amazing window to the fascinating underwater world. The term ‘aquarium’is a derivative of two words in Latin, i.e aqua denoting ‘water’ and arium or orium indicating ‘compartment’. Philip Henry Gosse, an English naturalist, was the first person to actually use the word "aquarium", in 1854 in his book The Aquarium: An Unveiling of the Wonders of the Deep Sea. In this book, Gosse primarily discussed saltwater aquaria. Aquarium or ornamental fish keeping has grown from the status of a mere hobby to a global industry capable of generating international exchequer at considerable levels. History shows that Romans have kept aquaria (plural for ‘aquarium’) since 2500 B.C and Chinese in 1278-960 B.C. But they used aquaria primarily for rearing and fattening of food fishes. Chinese developed the art of selective breeding in carp and goldfish, probably the best known animal for an aquarium. Ancient Egyptians were probably the first to keep the fish for ornamental purpose. World’s first public aquarium was established in Regents Park in London in 1853. Earlier only coldwater fishes were kept as pets as there was no practical system of heating which is required for tropical freshwater fish. The invention of electricity opened a vast scope of development in aquarium keeping. The ease of quick transportation and facilities for carting in temperature controlled packaging has broadened the horizon for this hobby. -
Comprehensive Phylogenomic Analyses Resolve Cnidarian Relationships and the Origins of Key Organismal Traits
Comprehensive phylogenomic analyses resolve cnidarian relationships and the origins of key organismal traits Ehsan Kayal1,2, Bastian Bentlage1,3, M. Sabrina Pankey5, Aki H. Ohdera4, Monica Medina4, David C. Plachetzki5*, Allen G. Collins1,6, Joseph F. Ryan7,8* Authors Institutions: 1. Department of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution 2. UPMC, CNRS, FR2424, ABiMS, Station Biologique, 29680 Roscoff, France 3. Marine Laboratory, university of Guam, UOG Station, Mangilao, GU 96923, USA 4. Department of Biology, Pennsylvania State University, University Park, PA, USA 5. Department of Molecular, Cellular and Biomedical Sciences, University of New Hampshire, Durham, NH, USA 6. National Systematics Laboratory, NOAA Fisheries, National Museum of Natural History, Smithsonian Institution 7. Whitney Laboratory for Marine Bioscience, University of Florida, St Augustine, FL, USA 8. Department of Biology, University of Florida, Gainesville, FL, USA PeerJ Preprints | https://doi.org/10.7287/peerj.preprints.3172v1 | CC BY 4.0 Open Access | rec: 21 Aug 2017, publ: 21 Aug 20171 Abstract Background: The phylogeny of Cnidaria has been a source of debate for decades, during which nearly all-possible relationships among the major lineages have been proposed. The ecological success of Cnidaria is predicated on several fascinating organismal innovations including symbiosis, colonial body plans and elaborate life histories, however, understanding the origins and subsequent diversification of these traits remains difficult due to persistent uncertainty surrounding the evolutionary relationships within Cnidaria. While recent phylogenomic studies have advanced our knowledge of the cnidarian tree of life, no analysis to date has included genome scale data for each major cnidarian lineage. Results: Here we describe a well-supported hypothesis for cnidarian phylogeny based on phylogenomic analyses of new and existing genome scale data that includes representatives of all cnidarian classes. -
EXTENDED COST BENEFIT ANALYSIS of PRESENT and FUTURE USE of INDONESIAN CORAL REEFS an Empirical Approach to Sustainable Management of Tropical Marine Resources
Aus dem Institut für Agrarökonomie der Christian-Albrechts-Universität zu Kiel EXTENDED COST BENEFIT ANALYSIS OF PRESENT AND FUTURE USE OF INDONESIAN CORAL REEFS An Empirical Approach to Sustainable Management of Tropical Marine Resources Dissertation zur Erlangung des Doktorgrades der Agrar-und Ernährungswissenschaftlichen Fakultät der Christian-Albrechts-Universität zu Kiel vorgelegt von Magister of Science Achmad Fahrudin aus Jakarta (Indonesien) Kiel, November 2003 Dekan : Prof. Dr. Friedhelm Taube Erster Berichterstatter : Prof. Dr. Christian Noell Zweiter Berichterstatter : Prof. Dr. Franciscus Colijn Tag der mündlichen Prüfung: 06.11.2003 i Gedruckt mit Genehmigung der Agrar- und Ernährungswissenschaftlichen Fakultät der Christian-Albrechts-Universität zu Kiel ii Zusammenfassung Korallen stellen einen wichtigen Faktor der indonesischen Wirtschaft dar. Im Vergleich zu anderen Ländern weisen die Korallenriffe Indonesiens die höchsten Schädigungen auf. Das zerstörende Fischen ist ein Hauptgrund für die Degradation der Korallenriffe in Indonesien, so dass das Gesamtsystem dieser Fangpraxis analysiert werden muss. Dazu wurden im Rahmen dieser Studie die Standortbedingungen der Korallen erfasst, die Hauptnutzungen mit ihren jeweiligen Auswirkungen und typischen Merkmale der Nutzungen bestimmt sowie die politische Haltung der gegenwärtigen Regierung gegenüber diesem Problemfeld untersucht. Die Feldarbeit wurde in der Zeit von März 2001 bis März 2002 an den Korallenstandorten Seribu Islands (Jakarta), Menjangan Island (Bali) und Gili Islands -
Guide to the Identification of Precious and Semi-Precious Corals in Commercial Trade
'l'llA FFIC YvALE ,.._,..---...- guide to the identification of precious and semi-precious corals in commercial trade Ernest W.T. Cooper, Susan J. Torntore, Angela S.M. Leung, Tanya Shadbolt and Carolyn Dawe September 2011 © 2011 World Wildlife Fund and TRAFFIC. All rights reserved. ISBN 978-0-9693730-3-2 Reproduction and distribution for resale by any means photographic or mechanical, including photocopying, recording, taping or information storage and retrieval systems of any parts of this book, illustrations or texts is prohibited without prior written consent from World Wildlife Fund (WWF). Reproduction for CITES enforcement or educational and other non-commercial purposes by CITES Authorities and the CITES Secretariat is authorized without prior written permission, provided the source is fully acknowledged. Any reproduction, in full or in part, of this publication must credit WWF and TRAFFIC North America. The views of the authors expressed in this publication do not necessarily reflect those of the TRAFFIC network, WWF, or the International Union for Conservation of Nature (IUCN). The designation of geographical entities in this publication and the presentation of the material do not imply the expression of any opinion whatsoever on the part of WWF, TRAFFIC, or IUCN concerning the legal status of any country, territory, or area, or of its authorities, or concerning the delimitation of its frontiers or boundaries. The TRAFFIC symbol copyright and Registered Trademark ownership are held by WWF. TRAFFIC is a joint program of WWF and IUCN. Suggested citation: Cooper, E.W.T., Torntore, S.J., Leung, A.S.M, Shadbolt, T. and Dawe, C. -
Resurrecting a Subgenus to Genus: Molecular Phylogeny of Euphyllia and Fimbriaphyllia (Order Scleractinia; Family Euphylliidae; Clade V)
Resurrecting a subgenus to genus: molecular phylogeny of Euphyllia and Fimbriaphyllia (order Scleractinia; family Euphylliidae; clade V) Katrina S. Luzon1,2,3,*, Mei-Fang Lin4,5,6,*, Ma. Carmen A. Ablan Lagman1,7, Wilfredo Roehl Y. Licuanan1,2,3 and Chaolun Allen Chen4,8,9,* 1 Biology Department, De La Salle University, Manila, Philippines 2 Shields Ocean Research (SHORE) Center, De La Salle University, Manila, Philippines 3 The Marine Science Institute, University of the Philippines, Quezon City, Philippines 4 Biodiversity Research Center, Academia Sinica, Taipei, Taiwan 5 Department of Molecular and Cell Biology, James Cook University, Townsville, Australia 6 Evolutionary Neurobiology Unit, Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan 7 Center for Natural Sciences and Environmental Research (CENSER), De La Salle University, Manila, Philippines 8 Taiwan International Graduate Program-Biodiversity, Academia Sinica, Taipei, Taiwan 9 Institute of Oceanography, National Taiwan University, Taipei, Taiwan * These authors contributed equally to this work. ABSTRACT Background. The corallum is crucial in building coral reefs and in diagnosing systematic relationships in the order Scleractinia. However, molecular phylogenetic analyses revealed a paraphyly in a majority of traditional families and genera among Scleractinia showing that other biological attributes of the coral, such as polyp morphology and reproductive traits, are underutilized. Among scleractinian genera, the Euphyllia, with nine nominal species in the Indo-Pacific region, is one of the groups Submitted 30 May 2017 that await phylogenetic resolution. Multiple genetic markers were used to construct Accepted 31 October 2017 Published 4 December 2017 the phylogeny of six Euphyllia species, namely E. ancora, E. divisa, E.